CmoCh04G025120 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G025120
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 18511572 .. 18511970 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGATTCAAAGTCTCGCCGGACGACAATCGGGAGCTACCCGAGCAAAATCCGACCGCCCACCACCCGCCCTCCGTCAATGGCAACCACCTTCCTCCAATCGATCCGGTGAAATCAGAGATTGCAACGTGGACGAAGCTTGCAATCCCATATCAGATCTGCGACGGAAAAGCGAAATCTGTGCTTCCATTGATTCCGGCGAAACCAGATACGGCGGTGACGTCGACCAATTCTGTCGGGTACAGAGCCGGCATCGGAAAAGTGAAATCTGTAATTCCGAAGAAGAGGAAGTTAGTGAAGACGATGATGTACCACTGCATTAAGGACTTCCTCAAATCGCTCTTCCGCCGCCCGCCGAAAACCCACCGCCGCCGCCCCAAACCCATTATCCATGACTAG

mRNA sequence

ATGCGATTCAAAGTCTCGCCGGACGACAATCGGGAGCTACCCGAGCAAAATCCGACCGCCCACCACCCGCCCTCCGTCAATGGCAACCACCTTCCTCCAATCGATCCGGTGAAATCAGAGATTGCAACGTGGACGAAGCTTGCAATCCCATATCAGATCTGCGACGGAAAAGCGAAATCTGTGCTTCCATTGATTCCGGCGAAACCAGATACGGCGGTGACGTCGACCAATTCTGTCGGGTACAGAGCCGGCATCGGAAAAGTGAAATCTGTAATTCCGAAGAAGAGGAAGTTAGTGAAGACGATGATGTACCACTGCATTAAGGACTTCCTCAAATCGCTCTTCCGCCGCCCGCCGAAAACCCACCGCCGCCGCCCCAAACCCATTATCCATGACTAG

Coding sequence (CDS)

ATGCGATTCAAAGTCTCGCCGGACGACAATCGGGAGCTACCCGAGCAAAATCCGACCGCCCACCACCCGCCCTCCGTCAATGGCAACCACCTTCCTCCAATCGATCCGGTGAAATCAGAGATTGCAACGTGGACGAAGCTTGCAATCCCATATCAGATCTGCGACGGAAAAGCGAAATCTGTGCTTCCATTGATTCCGGCGAAACCAGATACGGCGGTGACGTCGACCAATTCTGTCGGGTACAGAGCCGGCATCGGAAAAGTGAAATCTGTAATTCCGAAGAAGAGGAAGTTAGTGAAGACGATGATGTACCACTGCATTAAGGACTTCCTCAAATCGCTCTTCCGCCGCCCGCCGAAAACCCACCGCCGCCGCCCCAAACCCATTATCCATGACTAG

Homology

[Close]

BLAST of CmoCh04G025120 vs. TrEMBL
Match: A0A0A0KDQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G374710 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.8e-07
Identity = 40/72 (55.56%), Postives = 45/72 (62.50%), Query Frame = 1


Query: 61  VLPLIPAKPDTAVTSTNSVGYRAGIGKVKSVIPKKRKLVKTMMYHCIKDFLKSLFRRPPK 120
           V  L P KP  A  S   +  R G  K+KSVIPK+RKLVKTM+YH +KDFL SLF RP  
Sbjct: 12  VSDLPPDKPVAAFRSP-VIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLF-RPSS 71

Query: 121 THRRRPKPIIHD 133
               RPKPI  D
Sbjct: 72  DIHNRPKPISKD 81

[Close]

BLAST of CmoCh04G025120 vs. TrEMBL
Match: A0A0A0KFQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G374720 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.1e-06
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 64  LIPAKPDTAVTSTNSVGYRAGIGKVKSVIPKKRKLVKTMMYHCIKDFLKSLFRRPPK 121
           +IPAK +TA     ++ Y  G G VKSVIPKKR+LVK MMY CIK+++KSLF   PK
Sbjct: 12  VIPAKSETA-----TIVY-GGAGNVKSVIPKKRRLVKRMMYDCIKEWIKSLFCPTPK 62

[Close]

BLAST of CmoCh04G025120 vs. NCBI nr
Match: gi|700192474|gb|KGN47678.1| (hypothetical protein Csa_6G374710 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 6.9e-07
Identity = 40/72 (55.56%), Postives = 45/72 (62.50%), Query Frame = 1


Query: 61  VLPLIPAKPDTAVTSTNSVGYRAGIGKVKSVIPKKRKLVKTMMYHCIKDFLKSLFRRPPK 120
           V  L P KP  A  S   +  R G  K+KSVIPK+RKLVKTM+YH +KDFL SLF RP  
Sbjct: 12  VSDLPPDKPVAAFRSP-VIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLF-RPSS 71

Query: 121 THRRRPKPIIHD 133
               RPKPI  D
Sbjct: 72  DIHNRPKPISKD 81

The following BLAST results are available for this feature:

BLAST of CmoCh04G025120 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G025120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDQ7_CUCSA	4.8e-07	55.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G374710 PE=4 SV=1	[more]
A0A0A0KFQ1_CUCSA	9.1e-06	57.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G374720 PE=4 SV=1	[more]

BLAST of CmoCh04G025120 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G025120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192474\|gb\|KGN47678.1\|	6.9e-07	55.56	hypothetical protein Csa_6G374710 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G025120.1	CmoCh04G025120.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G025120	Csa6G374710	Cucumber (Chinese Long) v2	cmocuB761
CmoCh04G025120	MELO3C008457	Melon (DHL92) v3.5.1	cmomeB672
CmoCh04G025120	ClCG08G006130	Watermelon (Charleston Gray)	cmowcgB680
CmoCh04G025120	CSPI06G19930	Wild cucumber (PI 183967)	cmocpiB770
CmoCh04G025120	CsaV3_6G031320	Cucumber (Chinese Long) v3	cmocucB0902

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G025120	Watermelon (97103) v1	cmowmB661
CmoCh04G025120	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G025120	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G025120	Cucurbita pepo (Zucchini)	cmocpeB708
CmoCh04G025120	Bottle gourd (USVL1VR-Ls)	cmolsiB697
CmoCh04G025120	Melon (DHL92) v3.6.1	cmomedB760
CmoCh04G025120	Silver-seed gourd	carcmoB0094
CmoCh04G025120	Silver-seed gourd	carcmoB1121
CmoCh04G025120	Watermelon (97103) v2	cmowmbB760
CmoCh04G025120	Wax gourd	cmowgoB0865
CmoCh04G025120	Cucurbita moschata (Rifu)	cmocmoB029
CmoCh04G025120	Cucurbita moschata (Rifu)	cmocmoB262
CmoCh04G025120	Cucurbita moschata (Rifu)	cmocmoB367
CmoCh04G025120	Cucurbita maxima (Rimu)	cmacmoB309
CmoCh04G025120	Cucurbita maxima (Rimu)	cmacmoB729