CmoCh04G023920 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G023920
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Myb domain protein 20
Location	Cmo_Chr04 : 17830376 .. 17831568 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCATTTTCTTGTTCTCTCTCTAGGAAATTAAACAGAGAATTTAGAATTATGGGAAGGCAACCTTGTTGTGATAAAGTTGGGTTGAAAAAAGGGCCATGGACTGCTGAAGAGGACAAGAAGCTCATCAACTTCCTCCACACCAATGGTCAATGCTGTTGGAGGGCTGTCCCTAAACTTGCAGGTCTCGATTCCCGACCCCCCCGAAATCGTTCCGTTTAGACCATACCCGTGTCTAACCCGTTGAGCTATGTTTTGGGATTTTGCAGGATTGTTGCGATGTGGGAAGAGTTGCAGACTTAGATGGACTAATTACCTTAGGCCCGATCTAAAACGAGGCCTCTTGTCGGAATATGAGGAGAAAATGGTCGTTGATCTTCATTCTCAGATGGGTAATAGGTAAATATTTGATTGAATTTTTGTTATTTTTTTAAGAAAAATTAAGAGAGAGAGAGAGAAAGAAAGAAAGTGTTTTTATTTGACAATTGCAGGCTTGAGTCATGTGGTGTAATCATGGATGGCATGTTGTTTTTCTTCTCAAAACAAGGGGCAATTTTGACATTTTGCCTTTTTAGTAACTCGGTTTTAACTCGCTTACTCTTGTTTGGATAGGTGGTCAAAAATTGCTTCTCATCTTCCCGGAAGAACAGACAACGAGATAAAAAACCACTGGAACACCCACATAAAGAAAAAGCTAAAAAAGATGGGAATCGACCCTCAAACTCACAAGCCCATTTCTCCACTTTCTAACGACGCTCATTTGGCTCATCAAAACGATCAGAAGTCTCGACAACAACAATCTCCTCCATCTCCATCACCATCACCGTCACGAGCATTGGAAGAACATGATAAAGAGATAGTGATCGATGAAACCGACGTGATGAACTTACTCGTAGATGGGTTTTGCACGGAAGAAGACGTGTCACTAATCGAGCCGCTACAAGACGTTGGAGTCCCATGTGCTTCTTCTTCTTCAACAACCTCAACTCCTTCCTCTTCCACCCCCTCATCCTCTTCTTCATTTTGCTCACACTCTGAATCAGCAGCCAATTTGCTTCAAGATTTGGTGAATGAGTTCCCTGAATTTGAATGGCCAAATATTTGTGAAAATGGCTTACTGGATGAGCTTTTGGAGGATGAGCTTGGTGGTTGGGATTTTATCATCGATAATTCTTAAGAAATCACGATACTGTTCG

mRNA sequence

TCATTTTCTTGTTCTCTCTCTAGGAAATTAAACAGAGAATTTAGAATTATGGGAAGGCAACCTTGTTGTGATAAAGTTGGGTTGAAAAAAGGGCCATGGACTGCTGAAGAGGACAAGAAGCTCATCAACTTCCTCCACACCAATGGTCAATGCTGTTGGAGGGCTGTCCCTAAACTTGCAGGATTGTTGCGATGTGGGAAGAGTTGCAGACTTAGATGGACTAATTACCTTAGGCCCGATCTAAAACGAGGCCTCTTGTCGGAATATGAGGAGAAAATGGTCGTTGATCTTCATTCTCAGATGGGTAATAGAAAAATTAAGAGAGAGAGAGAGAAAGAAAGAAAGCTTGAGTCATGTGGTGTAATCATGGATGGCATGTTGTTTTTCTTCTCAAAACAAGGGGCAATTTTGACATTTTGCCTTTTTAGTAACTCGGTTTTAACTCGCTTACTCTTGTGGTCAAAAATTGCTTCTCATCTTCCCGGAAGAACAGACAACGAGATAAAAAACCACTGGAACACCCACATAAAGAAAAAGCTAAAAAAGATGGGAATCGACCCTCAAACTCACAAGCCCATTTCTCCACTTTCTAACGACGCTCATTTGGCTCATCAAAACGATCAGAAGTCTCGACAACAACAATCTCCTCCATCTCCATCACCATCACCGTCACGAGCATTGGAAGAACATGATAAAGAGATAGTGATCGATGAAACCGACGTGATGAACTTACTCGTAGATGGGTTTTGCACGGAAGAAGACGTGTCACTAATCGAGCCGCTACAAGACGTTGGAGTCCCATGTGCTTCTTCTTCTTCAACAACCTCAACTCCTTCCTCTTCCACCCCCTCATCCTCTTCTTCATTTTGCTCACACTCTGAATCAGCAGCCAATTTGCTTCAAGATTTGGTGAATGAGTTCCCTGAATTTGAATGGCCAAATATTTGTGAAAATGGCTTACTGGATGAGCTTTTGGAGGATGAGCTTGGTGGTTGGGATTTTATCATCGATAATTCTTAAGAAATCACGATACTGTTCG

Coding sequence (CDS)

ATGGGAAGGCAACCTTGTTGTGATAAAGTTGGGTTGAAAAAAGGGCCATGGACTGCTGAAGAGGACAAGAAGCTCATCAACTTCCTCCACACCAATGGTCAATGCTGTTGGAGGGCTGTCCCTAAACTTGCAGGATTGTTGCGATGTGGGAAGAGTTGCAGACTTAGATGGACTAATTACCTTAGGCCCGATCTAAAACGAGGCCTCTTGTCGGAATATGAGGAGAAAATGGTCGTTGATCTTCATTCTCAGATGGGTAATAGAAAAATTAAGAGAGAGAGAGAGAAAGAAAGAAAGCTTGAGTCATGTGGTGTAATCATGGATGGCATGTTGTTTTTCTTCTCAAAACAAGGGGCAATTTTGACATTTTGCCTTTTTAGTAACTCGGTTTTAACTCGCTTACTCTTGTGGTCAAAAATTGCTTCTCATCTTCCCGGAAGAACAGACAACGAGATAAAAAACCACTGGAACACCCACATAAAGAAAAAGCTAAAAAAGATGGGAATCGACCCTCAAACTCACAAGCCCATTTCTCCACTTTCTAACGACGCTCATTTGGCTCATCAAAACGATCAGAAGTCTCGACAACAACAATCTCCTCCATCTCCATCACCATCACCGTCACGAGCATTGGAAGAACATGATAAAGAGATAGTGATCGATGAAACCGACGTGATGAACTTACTCGTAGATGGGTTTTGCACGGAAGAAGACGTGTCACTAATCGAGCCGCTACAAGACGTTGGAGTCCCATGTGCTTCTTCTTCTTCAACAACCTCAACTCCTTCCTCTTCCACCCCCTCATCCTCTTCTTCATTTTGCTCACACTCTGAATCAGCAGCCAATTTGCTTCAAGATTTGGTGAATGAGTTCCCTGAATTTGAATGGCCAAATATTTGTGAAAATGGCTTACTGGATGAGCTTTTGGAGGATGAGCTTGGTGGTTGGGATTTTATCATCGATAATTCTTAA

Homology

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BLAST of CmoCh04G023920 vs. Swiss-Prot
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.8e-43
Identity = 76/88 (86.36%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1  MGRQPCCDKVGLKKGPWTAEEDKKLINFLHTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60
          MGRQPCCDK+G+KKGPWTAEEDKKLI+F+ TNGQCCWRAVPKLAGL RCGKSCRLRWTNY
Sbjct: 1  MGRQPCCDKLGVKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNY 60

Query: 61 LRPDLKRGLLSEYEEKMVVDLHSQMGNR 89
          LRPDLKRGLLS+ EEK+V+DLHS++GNR
Sbjct: 61 LRPDLKRGLLSDAEEKLVIDLHSRLGNR 88

[Close]

BLAST of CmoCh04G023920 vs. Swiss-Prot
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens subsp. patens GN=PP2 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 9.2e-37
Identity = 63/88 (71.59%), Postives = 79/88 (89.77%), Query Frame = 1


Query: 1  MGRQPCCDKVGLKKGPWTAEEDKKLINFLHTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60
          MGR+PCC+KVGL++GPWT+EED+KL++ +  NG  CWRA+PKLAGLLRCGKSCRLRWTNY
Sbjct: 1  MGRKPCCEKVGLRRGPWTSEEDQKLVSHITNNGLSCWRAIPKLAGLLRCGKSCRLRWTNY 60

Query: 61 LRPDLKRGLLSEYEEKMVVDLHSQMGNR 89
          LRPDLKRG+ SE EE +++DLH+ +GNR
Sbjct: 61 LRPDLKRGIFSEAEENLILDLHATLGNR 88

[Close]

BLAST of CmoCh04G023920 vs. Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.7e-30
Identity = 54/88 (61.36%), Postives = 71/88 (80.68%), Query Frame = 1


Query: 1  MGRQPCCDKVGLKKGPWTAEEDKKLINFLHTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60
          MGR PCC+K    KG WT EED++LIN++  +G+ CWR++PK AGLLRCGKSCRLRW NY
Sbjct: 1  MGRSPCCEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61 LRPDLKRGLLSEYEEKMVVDLHSQMGNR 89
          LRPDLKRG  +E E+++++ LHS +GN+
Sbjct: 61 LRPDLKRGNFTEEEDEIIIKLHSLLGNK 88

[Close]

BLAST of CmoCh04G023920 vs. Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.4e-30
Identity = 57/88 (64.77%), Postives = 72/88 (81.82%), Query Frame = 1


Query: 1  MGRQPCCDKVGLKKGPWTAEEDKKLINFLHTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60
          MGR PCC+KVG+K+G WTAEED+ L N++ +NG+  WR++PK AGL RCGKSCRLRW NY
Sbjct: 1  MGRAPCCEKVGIKRGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINY 60

Query: 61 LRPDLKRGLLSEYEEKMVVDLHSQMGNR 89
          LR DLKRG ++  EE++VV LHS +GNR
Sbjct: 61 LRSDLKRGNITPEEEELVVKLHSTLGNR 88

[Close]

BLAST of CmoCh04G023920 vs. Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 132.9 bits (333), Expect = 6.4e-30
Identity = 57/88 (64.77%), Postives = 68/88 (77.27%), Query Frame = 1


Query: 1  MGRQPCCDKVGLKKGPWTAEEDKKLINFLHTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60
          MGR PCC+K+GLKKGPWT EEDK L+  +  +G   WRA+PK AGLLRCGKSCRLRW NY
Sbjct: 1  MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINY 60

Query: 61 LRPDLKRGLLSEYEEKMVVDLHSQMGNR 89
          LRPD+KRG  S+ EE  ++ LH  +GNR
Sbjct: 61 LRPDIKRGNFSKEEEDTIIHLHELLGNR 88

[Close]

BLAST of CmoCh04G023920 vs. TrEMBL
Match: M0TIQ5_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 3.8e-58
Identity = 150/321 (46.73%), Postives = 180/321 (56.07%), Query Frame = 1


Query: 1   MGRQPCCDKVGLKKGPWTAEEDKKLINFLHTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60
           MGRQPCCDKVGLKKGPWT EEDK+LINF+ TNGQCCWR VPKLAGLLRCGKSCRLRWTNY
Sbjct: 1   MGRQPCCDKVGLKKGPWTTEEDKRLINFMLTNGQCCWRVVPKLAGLLRCGKSCRLRWTNY 60

Query: 61  LRPDLKRGLLSEYEEKMVVDLHSQMGNRKIKREREKERKLESCGVIMDGMLFFFSKQGAI 120
           LRPDLKRGLLS                       E+E K+     +++      ++  A 
Sbjct: 61  LRPDLKRGLLS-----------------------EEEEKM-----VIELHSQLGNRHAAA 120

Query: 121 LTFCLFSNSVLTRLLLWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPQTHKPISPL 180
                 S         WS+IASHL GRTDNEIKNHWNTHIKKKL+KMGIDP  HKP+ P 
Sbjct: 121 APHLPSS---------WSRIASHLRGRTDNEIKNHWNTHIKKKLRKMGIDPLLHKPLIPS 180

Query: 181 SNDAHLAHQNDQKSRQQQSPPSPSPSPSRALEEHDKEIVIDETDVMNLLVDGFCTEEDVS 240
           +                      S S   A  + ++ I    +D       GFCT+E V 
Sbjct: 181 AR---------------------SSSEKAAEGQVEENIPSTASDAFLSKSPGFCTDE-VP 240

Query: 241 LIEPLQDVGVPCASSSSTTSTPSSSTPSSSSSFCSHSESAANLLQDLVNEFPEFEWPNIC 300
           +I P  D+   CAS      TP++S+  S+SS CS S S++   +    +FP  EWP   
Sbjct: 241 MILP-HDILASCAS------TPTASSSISTSSTCSSSSSSSKAAE---IQFPCMEWP--- 247

Query: 301 ENGLLDELLEDELGGWDFIID 322
           E+  L  L  D+L GWDFI D
Sbjct: 301 ESTYLWGL--DDLNGWDFIFD 247

[Close]

BLAST of CmoCh04G023920 vs. TrEMBL
Match: A0A0A0KRP9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G425400 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 7.0e-52
Identity = 124/190 (65.26%), Postives = 146/190 (76.84%), Query Frame = 1


Query: 137 WSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPQTHKPISPLSNDAHLAHQNDQKSRQ 196
           WSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPQTHK IS  S+D HL    D+  RQ
Sbjct: 89  WSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPQTHKSISQTSDDTHLT---DKDKRQ 148

Query: 197 QQSPPSPSPSPSRALEEHDKEIVIDETDVMNLLVDGFCTEEDVSLIEPLQDVGVPCASSS 256
              PPSP     + +     +I+  ET++ +L++DGFCTEE V LIEP  ++ VPCASSS
Sbjct: 149 SSQPPSPPKELKKEVTAAKTDII--ETNITDLIMDGFCTEE-VPLIEP-HEILVPCASSS 208

Query: 257 STTSTPSSSTPSSS-SSFCSHSESAANLLQDLVNEFPEFEWPNIC-ENGLLDE-LLEDEL 316
           STTST  SS+ S S SSF S+ ESAANLLQDLVNEFPEFEWPNIC ENG+++E LLED+ 
Sbjct: 209 STTSTSYSSSSSYSYSSFSSNPESAANLLQDLVNEFPEFEWPNICEENGIVEEGLLEDDF 268

Query: 317 G-GWDFIIDN 323
           G  WDF+++N
Sbjct: 269 GSSWDFMVNN 271

[Close]

BLAST of CmoCh04G023920 vs. TrEMBL
Match: G7J9D0_MEDTR (Myb transcription factor OS=Medicago truncatula GN=MTR_3g065440 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.4e-46
Identity = 143/335 (42.69%), Postives = 188/335 (56.12%), Query Frame = 1


Query: 1   MGRQPCCDKVGLKKGPWTAEEDKKLINFLHTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60
           MGRQPCCDKVGLKKGPWTAEEDKKLINF+ TNGQCCWRAVPKLAGLLRCGKSCRLRWTNY
Sbjct: 1   MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60

Query: 61  LRPDLKRGLLSEYEEKMVVDLHSQMGNR--KIKREREKERKLESCGVIMDGMLFFFSKQG 120
           LRPDLKRGLLSEYEEKMV+DLH+Q+GNR  KI          E        +     K G
Sbjct: 61  LRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMG 120

Query: 121 A-ILTFCLFSNSVLTRLLLWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPQTHKPI 180
              +T  L SN+++ +             +T +E                  +PQ  +  
Sbjct: 121 IDPVTHKLLSNAIIEQT------------QTQSE-----------------QEPQ-QQSS 180

Query: 181 SPLSNDAHLAHQNDQKSRQQQSPPSPSPSPSRALEEHDKEIVIDETDVMNLLVDGFCTEE 240
           SP+  + ++  +ND+    Q+   S   S     +E D+ +       M L+ + F   E
Sbjct: 181 SPIEMEHNVEFENDKNKEPQKPETSFESSTITEAKEQDQIMTPIFDSTMELMNELF--TE 240

Query: 241 DVSLIEPLQDVGVPCASSSSTTSTPSSSTPSSSSSFCSHSESAANLLQDLVNEFPEFEW- 300
           +V +I P  ++ VP  SSSSTT++ SSST +S+SS         N L+DL+   P+F+W 
Sbjct: 241 EVPIIIP-NEILVP--SSSSTTTSTSSSTSTSNSS---------NFLEDLL--LPDFDWS 289

Query: 301 -PNICENGL------LDELL--EDELGGWDFIIDN 323
             N  EN        ++  L  +D +  WDF+I++
Sbjct: 301 HDNNIENNSDNNNNNINMTLWDDDFIRSWDFVIND 289

[Close]

BLAST of CmoCh04G023920 vs. TrEMBL
Match: A0A0D9X945_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 4.9e-45
Identity = 93/176 (52.84%), Postives = 114/176 (64.77%), Query Frame = 1


Query: 1   MGRQPCCDKVGLKKGPWTAEEDKKLINFLHTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60
           MGR PCCD+ GLKKGPWT EED+KL+ ++  NG   WR +P+LAGL RCGKSCRLRWTNY
Sbjct: 1   MGRSPCCDESGLKKGPWTPEEDEKLLQYIQKNGHGSWRTLPRLAGLNRCGKSCRLRWTNY 60

Query: 61  LRPDLKRGLLSEYEEKMVVDLHSQMGNRKIKREREKERKLESCGVIMDGMLFFFSKQGAI 120
           LRPD+KRG  S+ EE+ ++ LHS +GN+     R   R   S     +            
Sbjct: 61  LRPDIKRGKFSQDEEQTILHLHSILGNKYDPVHRSMHRIRSSIRHETE------------ 120

Query: 121 LTFCLFSNSVLTRLLLWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPQTHKP 177
               L  N +  R   WS IA+HLPGRTDNEIKN WNTH+KK+L +MG DP TH+P
Sbjct: 121 ----LDRNGLFPR--RWSAIATHLPGRTDNEIKNFWNTHLKKRLIQMGFDPMTHRP 158

[Close]

BLAST of CmoCh04G023920 vs. TrEMBL
Match: A0A067JPA9_JATCU (MYB family protein OS=Jatropha curcas GN=JCGZ_22508 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 6.4e-45
Identity = 83/88 (94.32%), Postives = 87/88 (98.86%), Query Frame = 1


Query: 1  MGRQPCCDKVGLKKGPWTAEEDKKLINFLHTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60
          MGRQPCCDKVGLKKGPWTAEEDKKLINF+ TNGQCCWRAVPKLAGLLRCGKSCRLRWTNY
Sbjct: 1  MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60

Query: 61 LRPDLKRGLLSEYEEKMVVDLHSQMGNR 89
          LRPDLKRGLLSEYEEKMV+DLH+Q+GNR
Sbjct: 61 LRPDLKRGLLSEYEEKMVIDLHAQLGNR 88

[Close]

BLAST of CmoCh04G023920 vs. TAIR10
Match: AT1G66230.1 (AT1G66230.1 myb domain protein 20)

HSP 1 Score: 187.2 bits (474), Expect = 1.6e-47
Identity = 81/88 (92.05%), Postives = 87/88 (98.86%), Query Frame = 1


Query: 1  MGRQPCCDKVGLKKGPWTAEEDKKLINFLHTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60
          MGRQPCCDKVGLKKGPWTAEED+KLINF+ TNGQCCWRAVPKL+GLLRCGKSCRLRWTNY
Sbjct: 1  MGRQPCCDKVGLKKGPWTAEEDRKLINFILTNGQCCWRAVPKLSGLLRCGKSCRLRWTNY 60

Query: 61 LRPDLKRGLLSEYEEKMVVDLHSQMGNR 89
          LRPDLKRGLLS+YEEKMV+DLHSQ+GNR
Sbjct: 61 LRPDLKRGLLSDYEEKMVIDLHSQLGNR 88

[Close]

BLAST of CmoCh04G023920 vs. TAIR10
Match: AT5G16600.1 (AT5G16600.1 myb domain protein 43)

HSP 1 Score: 175.3 bits (443), Expect = 6.3e-44
Identity = 75/88 (85.23%), Postives = 83/88 (94.32%), Query Frame = 1


Query: 1  MGRQPCCDKVGLKKGPWTAEEDKKLINFLHTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60
          MGRQPCCDKVGLKKGPWT EEDKKLINF+ TNG CCWRA+PKL+GLLRCGKSCRLRW NY
Sbjct: 1  MGRQPCCDKVGLKKGPWTIEEDKKLINFILTNGHCCWRALPKLSGLLRCGKSCRLRWINY 60

Query: 61 LRPDLKRGLLSEYEEKMVVDLHSQMGNR 89
          LRPDLKRGLLSEYEE+ V++LH+Q+GNR
Sbjct: 61 LRPDLKRGLLSEYEEQKVINLHAQLGNR 88

[Close]

BLAST of CmoCh04G023920 vs. TAIR10
Match: AT4G22680.1 (AT4G22680.1 myb domain protein 85)

HSP 1 Score: 168.7 bits (426), Expect = 5.9e-42
Identity = 71/88 (80.68%), Postives = 81/88 (92.05%), Query Frame = 1


Query: 1  MGRQPCCDKVGLKKGPWTAEEDKKLINFLHTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60
          MGRQPCCDK+G+KKGPWT EEDKKLINF+ TNG CCWRA+PKLAGL RCGKSCRLRWTNY
Sbjct: 1  MGRQPCCDKLGVKKGPWTVEEDKKLINFILTNGHCCWRALPKLAGLRRCGKSCRLRWTNY 60

Query: 61 LRPDLKRGLLSEYEEKMVVDLHSQMGNR 89
          LRPDLKRGLLS  EE++V+DLH+ +GN+
Sbjct: 61 LRPDLKRGLLSHDEEQLVIDLHANLGNK 88

[Close]

BLAST of CmoCh04G023920 vs. TAIR10
Match: AT4G12350.1 (AT4G12350.1 myb domain protein 42)

HSP 1 Score: 168.3 bits (425), Expect = 7.7e-42
Identity = 72/88 (81.82%), Postives = 82/88 (93.18%), Query Frame = 1


Query: 1  MGRQPCCDKVGLKKGPWTAEEDKKLINFLHTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60
          MGRQPCCDK+ +KKGPWTAEEDKKLINF+ TNG CCWRA+PKLAGL RCGKSCRLRWTNY
Sbjct: 1  MGRQPCCDKLMVKKGPWTAEEDKKLINFILTNGHCCWRALPKLAGLRRCGKSCRLRWTNY 60

Query: 61 LRPDLKRGLLSEYEEKMVVDLHSQMGNR 89
          LRPDLKRGLLS+ EE++V+DLH+ +GNR
Sbjct: 61 LRPDLKRGLLSDAEEQLVIDLHALLGNR 88

[Close]

BLAST of CmoCh04G023920 vs. TAIR10
Match: AT5G14340.1 (AT5G14340.1 myb domain protein 40)

HSP 1 Score: 149.4 bits (376), Expect = 3.7e-36
Identity = 63/88 (71.59%), Postives = 75/88 (85.23%), Query Frame = 1


Query: 1  MGRQPCCDKVGLKKGPWTAEEDKKLINFLHTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60
          MGR+PCCDK+GLK+GPWT EED +L+NF+  NG  CWR VPKLAGLLRCGKSCRLRW NY
Sbjct: 1  MGRKPCCDKIGLKRGPWTIEEDHRLMNFILNNGIHCWRIVPKLAGLLRCGKSCRLRWINY 60

Query: 61 LRPDLKRGLLSEYEEKMVVDLHSQMGNR 89
          LRPDLKRG  ++ EE  +++LHSQ+GNR
Sbjct: 61 LRPDLKRGGFTDAEEDRIMELHSQLGNR 88

[Close]

BLAST of CmoCh04G023920 vs. NCBI nr
Match: gi|449445075|ref|XP_004140299.1| (PREDICTED: protein ODORANT1 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 1.0e-51
Identity = 124/190 (65.26%), Postives = 146/190 (76.84%), Query Frame = 1


Query: 137 WSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPQTHKPISPLSNDAHLAHQNDQKSRQ 196
           WSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPQTHK IS  S+D HL    D+  RQ
Sbjct: 89  WSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPQTHKSISQTSDDTHLT---DKDKRQ 148

Query: 197 QQSPPSPSPSPSRALEEHDKEIVIDETDVMNLLVDGFCTEEDVSLIEPLQDVGVPCASSS 256
              PPSP     + +     +I+  ET++ +L++DGFCTEE V LIEP  ++ VPCASSS
Sbjct: 149 SSQPPSPPKELKKEVTAAKTDII--ETNITDLIMDGFCTEE-VPLIEP-HEILVPCASSS 208

Query: 257 STTSTPSSSTPSSS-SSFCSHSESAANLLQDLVNEFPEFEWPNIC-ENGLLDE-LLEDEL 316
           STTST  SS+ S S SSF S+ ESAANLLQDLVNEFPEFEWPNIC ENG+++E LLED+ 
Sbjct: 209 STTSTSYSSSSSYSYSSFSSNPESAANLLQDLVNEFPEFEWPNICEENGIVEEGLLEDDF 268

Query: 317 G-GWDFIIDN 323
           G  WDF+++N
Sbjct: 269 GSSWDFMVNN 271

[Close]

BLAST of CmoCh04G023920 vs. NCBI nr
Match: gi|357460865|ref|XP_003600714.1| (myb transcription factor [Medicago truncatula])

HSP 1 Score: 193.7 bits (491), Expect = 4.8e-46
Identity = 143/335 (42.69%), Postives = 188/335 (56.12%), Query Frame = 1


Query: 1   MGRQPCCDKVGLKKGPWTAEEDKKLINFLHTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60
           MGRQPCCDKVGLKKGPWTAEEDKKLINF+ TNGQCCWRAVPKLAGLLRCGKSCRLRWTNY
Sbjct: 1   MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60

Query: 61  LRPDLKRGLLSEYEEKMVVDLHSQMGNR--KIKREREKERKLESCGVIMDGMLFFFSKQG 120
           LRPDLKRGLLSEYEEKMV+DLH+Q+GNR  KI          E        +     K G
Sbjct: 61  LRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMG 120

Query: 121 A-ILTFCLFSNSVLTRLLLWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPQTHKPI 180
              +T  L SN+++ +             +T +E                  +PQ  +  
Sbjct: 121 IDPVTHKLLSNAIIEQT------------QTQSE-----------------QEPQ-QQSS 180

Query: 181 SPLSNDAHLAHQNDQKSRQQQSPPSPSPSPSRALEEHDKEIVIDETDVMNLLVDGFCTEE 240
           SP+  + ++  +ND+    Q+   S   S     +E D+ +       M L+ + F   E
Sbjct: 181 SPIEMEHNVEFENDKNKEPQKPETSFESSTITEAKEQDQIMTPIFDSTMELMNELF--TE 240

Query: 241 DVSLIEPLQDVGVPCASSSSTTSTPSSSTPSSSSSFCSHSESAANLLQDLVNEFPEFEW- 300
           +V +I P  ++ VP  SSSSTT++ SSST +S+SS         N L+DL+   P+F+W 
Sbjct: 241 EVPIIIP-NEILVP--SSSSTTTSTSSSTSTSNSS---------NFLEDLL--LPDFDWS 289

Query: 301 -PNICENGL------LDELL--EDELGGWDFIIDN 323
             N  EN        ++  L  +D +  WDF+I++
Sbjct: 301 HDNNIENNSDNNNNNINMTLWDDDFIRSWDFVIND 289

[Close]

BLAST of CmoCh04G023920 vs. NCBI nr
Match: gi|950950606|ref|XP_014495432.1| (PREDICTED: protein ODORANT1 [Vigna radiata var. radiata])

HSP 1 Score: 189.5 bits (480), Expect = 9.1e-45
Identity = 83/88 (94.32%), Postives = 87/88 (98.86%), Query Frame = 1


Query: 1  MGRQPCCDKVGLKKGPWTAEEDKKLINFLHTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60
          MGRQPCCDKVGLKKGPWTAEEDKKLINF+ TNGQCCWRAVPKLAGLLRCGKSCRLRWTNY
Sbjct: 1  MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60

Query: 61 LRPDLKRGLLSEYEEKMVVDLHSQMGNR 89
          LRPDLKRGLLSEYEEKMV+DLH+Q+GNR
Sbjct: 61 LRPDLKRGLLSEYEEKMVIDLHAQLGNR 88

[Close]

BLAST of CmoCh04G023920 vs. NCBI nr
Match: gi|641831757|gb|KDO50806.1| (hypothetical protein CISIN_1g021498mg [Citrus sinensis])

HSP 1 Score: 189.5 bits (480), Expect = 9.1e-45
Identity = 83/88 (94.32%), Postives = 87/88 (98.86%), Query Frame = 1


Query: 1  MGRQPCCDKVGLKKGPWTAEEDKKLINFLHTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60
          MGRQPCCDKVGLKKGPWTAEEDKKLINF+ TNGQCCWRAVPKLAGLLRCGKSCRLRWTNY
Sbjct: 1  MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60

Query: 61 LRPDLKRGLLSEYEEKMVVDLHSQMGNR 89
          LRPDLKRGLLSEYEEKMV+DLH+Q+GNR
Sbjct: 61 LRPDLKRGLLSEYEEKMVIDLHAQLGNR 88

[Close]

BLAST of CmoCh04G023920 vs. NCBI nr
Match: gi|920696001|gb|KOM39226.1| (hypothetical protein LR48_Vigan03g260800 [Vigna angularis])

HSP 1 Score: 189.5 bits (480), Expect = 9.1e-45
Identity = 83/88 (94.32%), Postives = 87/88 (98.86%), Query Frame = 1


Query: 1  MGRQPCCDKVGLKKGPWTAEEDKKLINFLHTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60
          MGRQPCCDKVGLKKGPWTAEEDKKLINF+ TNGQCCWRAVPKLAGLLRCGKSCRLRWTNY
Sbjct: 1  MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNY 60

Query: 61 LRPDLKRGLLSEYEEKMVVDLHSQMGNR 89
          LRPDLKRGLLSEYEEKMV+DLH+Q+GNR
Sbjct: 61 LRPDLKRGLLSEYEEKMVIDLHAQLGNR 88

The following BLAST results are available for this feature:

BLAST of CmoCh04G023920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ODO1_PETHY	3.8e-43	86.36	Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1	[more]
MYB2_PHYPA	9.2e-37	71.59	Myb-related protein Pp2 OS=Physcomitrella patens subsp. patens GN=PP2 PE=2 SV=1	[more]
MYB30_ANTMA	1.7e-30	61.36	Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1	[more]
MYB12_ARATH	6.4e-30	64.77	Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1	[more]
MYB4_ORYSJ	6.4e-30	64.77	Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2	[more]

BLAST of CmoCh04G023920 vs. TrEMBL


Match Name	E-value	Identity	Description
M0TIQ5_MUSAM	3.8e-58	46.73	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
A0A0A0KRP9_CUCSA	7.0e-52	65.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G425400 PE=4 SV=1	[more]
G7J9D0_MEDTR	3.4e-46	42.69	Myb transcription factor OS=Medicago truncatula GN=MTR_3g065440 PE=4 SV=1	[more]
A0A0D9X945_9ORYZ	4.9e-45	52.84	Uncharacterized protein OS=Leersia perrieri PE=4 SV=1	[more]
A0A067JPA9_JATCU	6.4e-45	94.32	MYB family protein OS=Jatropha curcas GN=JCGZ_22508 PE=4 SV=1	[more]

BLAST of CmoCh04G023920 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G66230.1	1.6e-47	92.05	myb domain protein 20	[more]
AT5G16600.1	6.3e-44	85.23	myb domain protein 43	[more]
AT4G22680.1	5.9e-42	80.68	myb domain protein 85	[more]
AT4G12350.1	7.7e-42	81.82	myb domain protein 42	[more]
AT5G14340.1	3.7e-36	71.59	myb domain protein 40	[more]

BLAST of CmoCh04G023920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445075\|ref\|XP_004140299.1\|	1.0e-51	65.26	PREDICTED: protein ODORANT1 [Cucumis sativus]	[more]
gi\|357460865\|ref\|XP_003600714.1\|	4.8e-46	42.69	myb transcription factor [Medicago truncatula]	[more]
gi\|950950606\|ref\|XP_014495432.1\|	9.1e-45	94.32	PREDICTED: protein ODORANT1 [Vigna radiata var. radiata]	[more]
gi\|641831757\|gb\|KDO50806.1\|	9.1e-45	94.32	hypothetical protein CISIN_1g021498mg [Citrus sinensis]	[more]
gi\|920696001\|gb\|KOM39226.1\|	9.1e-45	94.32	hypothetical protein LR48_Vigan03g260800 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017877	Myb-like_dom
IPR017930	Myb_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0071554	cell wall organization or biogenesis
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0008150	biological_process
biological_process	GO:0010413	glucuronoxylan metabolic process
biological_process	GO:2000652	regulation of secondary cell wall biogenesis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0045492	xylan biosynthetic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G023920.1	CmoCh04G023920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 137..159 score: 1.7E-7coord: 14..61 score: 2.0
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 13..63 score: 2.0E-13coord: 66..162 score: 1.
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 5..63 score: 1.7E-20coord: 64..87 score: 2.0E-18coord: 136..165 score: 2.0
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 132..161 score: 4.07E-21coord: 14..65 score: 4.07
IPR017877	Myb-like domain	PROFILE	PS50090	MYB_LIKE	coord: 62..160 score: 7
IPR017930	Myb domain	PROFILE	PS51294	HTH_MYB	coord: 9..65 score: 20
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 136..323 score: 6.1E-120coord: 1..87 score: 6.1E
None	No IPR available	PANTHER	PTHR10641:SF498	MYB TRANSCRIPTION FACTOR	coord: 136..323 score: 6.1E-120coord: 1..87 score: 6.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G023920	Cucsa.006170	Cucumber (Gy14) v1	cgycmoB0116
CmoCh04G023920	CmaCh15G007470	Cucurbita maxima (Rimu)	cmacmoB309
CmoCh04G023920	CmaCh04G022880	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G023920	Cla009156	Watermelon (97103) v1	cmowmB707
CmoCh04G023920	Csa5G425400	Cucumber (Chinese Long) v2	cmocuB740
CmoCh04G023920	MELO3C022867	Melon (DHL92) v3.5.1	cmomeB626
CmoCh04G023920	ClCG01G008780	Watermelon (Charleston Gray)	cmowcgB636
CmoCh04G023920	CSPI05G15180	Wild cucumber (PI 183967)	cmocpiB749
CmoCh04G023920	Lsi09G009170	Bottle gourd (USVL1VR-Ls)	cmolsiB610
CmoCh04G023920	Cp4.1LG01g19890	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G023920	CsaV3_5G024200	Cucumber (Chinese Long) v3	cmocucB0876
CmoCh04G023920	Cla97C01G009010	Watermelon (97103) v2	cmowmbB676
CmoCh04G023920	Bhi12G001058	Wax gourd	cmowgoB0822
CmoCh04G023920	Carg18275	Silver-seed gourd	carcmoB0716
CmoCh04G023920	Carg01459	Silver-seed gourd	carcmoB1121

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G023920	CmoCh15G007700	Cucurbita moschata (Rifu)	cmocmoB262

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G023920	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G023920	Cucumber (Gy14) v2	cgybcmoB654
CmoCh04G023920	Melon (DHL92) v3.6.1	cmomedB715