CmoCh04G022470 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G022470
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Zinc finger family protein
Location	Cmo_Chr04 : 16802386 .. 16803077 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAATAAGGTAATGTTTAGGTTGAATTGTATCGATAACTAATATTACATAGTATTTTTCAGAGTGGAGAGCTTCATAGAACACCAAGATGCTTGTAATCTCCGGCAGCTGAGGTCCGATGCACCACCGCCGTTGCTACCACCGCCATTACTACAACCCTACTCACGATCGATTTCTTACACCGGTGCCTCGACCAGCAACGATCATAGCTTTCAAATGGCTACACCATTACGAGGGTTTCCAATTTTATCATCGAACTTAGATCGAAACATCAACATTAATTTTCCGAATCACCATGATCTCGAGCTTCACCTTTCATCTCCAAGCTCGGCGTTTCTTAAACTCTCAATTGGGTCAAACAAGGAGGCAAAGGAAGAGCGTCAGCTTGATTTGGCGATCGCCGAGAAAGCTTACGCAGAAGAAGCACGACGAGAGGCGAAACGACAGATCGAGATCGCCGAGGTCGAGTTCGCAAATGCGAAAATGATACGACAACAAGCTCAAGCAGAGTTGGAAAAAGCTAGGATCTTGAAGGAAGAAGCCACAAGGAAAATGAGCTCCACAATTATGGAAATCACTTGCCAAACTTGTCGGCTACACTTCCATATGAGCTCCGTTACACCGGAGGAGACCTCATTGGCCATTAGCTACATGTCATCCGCTACAACAGAAGGTGATGGAGAGTGA

mRNA sequence

ATGGAAGAAATAAGAGTGGAGAGCTTCATAGAACACCAAGATGCTTGTAATCTCCGGCAGCTGAGGTCCGATGCACCACCGCCGTTGCTACCACCGCCATTACTACAACCCTACTCACGATCGATTTCTTACACCGGTGCCTCGACCAGCAACGATCATAGCTTTCAAATGGCTACACCATTACGAGGGTTTCCAATTTTATCATCGAACTTAGATCGAAACATCAACATTAATTTTCCGAATCACCATGATCTCGAGCTTCACCTTTCATCTCCAAGCTCGGCGTTTCTTAAACTCTCAATTGGGTCAAACAAGGAGGCAAAGGAAGAGCGTCAGCTTGATTTGGCGATCGCCGAGAAAGCTTACGCAGAAGAAGCACGACGAGAGGCGAAACGACAGATCGAGATCGCCGAGGTCGAGTTCGCAAATGCGAAAATGATACGACAACAAGCTCAAGCAGAGTTGGAAAAAGCTAGGATCTTGAAGGAAGAAGCCACAAGGAAAATGAGCTCCACAATTATGGAAATCACTTGCCAAACTTGTCGGCTACACTTCCATATGAGCTCCGTTACACCGGAGGAGACCTCATTGGCCATTAGCTACATGTCATCCGCTACAACAGAAGGTGATGGAGAGTGA

Coding sequence (CDS)

ATGGAAGAAATAAGAGTGGAGAGCTTCATAGAACACCAAGATGCTTGTAATCTCCGGCAGCTGAGGTCCGATGCACCACCGCCGTTGCTACCACCGCCATTACTACAACCCTACTCACGATCGATTTCTTACACCGGTGCCTCGACCAGCAACGATCATAGCTTTCAAATGGCTACACCATTACGAGGGTTTCCAATTTTATCATCGAACTTAGATCGAAACATCAACATTAATTTTCCGAATCACCATGATCTCGAGCTTCACCTTTCATCTCCAAGCTCGGCGTTTCTTAAACTCTCAATTGGGTCAAACAAGGAGGCAAAGGAAGAGCGTCAGCTTGATTTGGCGATCGCCGAGAAAGCTTACGCAGAAGAAGCACGACGAGAGGCGAAACGACAGATCGAGATCGCCGAGGTCGAGTTCGCAAATGCGAAAATGATACGACAACAAGCTCAAGCAGAGTTGGAAAAAGCTAGGATCTTGAAGGAAGAAGCCACAAGGAAAATGAGCTCCACAATTATGGAAATCACTTGCCAAACTTGTCGGCTACACTTCCATATGAGCTCCGTTACACCGGAGGAGACCTCATTGGCCATTAGCTACATGTCATCCGCTACAACAGAAGGTGATGGAGAGTGA

Homology

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BLAST of CmoCh04G022470 vs. Swiss-Prot
Match: IDD15_ARATH (Protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana GN=SGR5 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.9e-28
Identity = 100/260 (38.46%), Postives = 136/260 (52.31%), Query Frame = 1


Query: 5   RVESFIEHQDACNLRQLRSDAPPP-----LLPP------PLLQPYSRSISYTGASTSNDH 64
           RVESFIEHQD C+ R++  + P P      +P         +   S   +Y G       
Sbjct: 188 RVESFIEHQDNCSARRVHREPPRPPQTAVTVPACSSRTASTVSTPSSETNYGGTV----- 247

Query: 65  SFQMATPLRGFPI-------LSSNLDRNININF----------PNHHDLELHLSSPS--- 124
           +     PL G PI       + +N   N+N+            PN  + +  +  PS   
Sbjct: 248 AVTTPQPLEGRPIHQRISSSILTNSSNNLNLELQLLPLSSNQNPNQENQQQKVKEPSHHH 307

Query: 125 -----SAFLKLSIGSNKEAKEERQLD-------------LAIAEKAYAEEARREAKRQIE 184
                +  L LSI  +   +     D             +A+ EKAYAEEA+REAKRQ E
Sbjct: 308 NHNHDTTNLNLSIAPSSSYQHYNNFDRIKEIMASEQIMKIAMKEKAYAEEAKREAKRQRE 367

Query: 185 IAEVEFANAKMIRQQAQAELEKARILKEEATRKMSSTIMEITCQTCRLHFHMSSV---TP 213
           IAE EFANAK IRQ+AQAELE+A+ LKE++ +K+SSTIM++TCQTC+  F   +V   T 
Sbjct: 368 IAENEFANAKKIRQKAQAELERAKFLKEQSMKKISSTIMQVTCQTCKGQFQAVAVPAATA 427

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BLAST of CmoCh04G022470 vs. Swiss-Prot
Match: IDD14_ARATH (Protein indeterminate-domain 14 OS=Arabidopsis thaliana GN=IDD14 PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.0e-23
Identity = 91/232 (39.22%), Postives = 126/232 (54.31%), Query Frame = 1


Query: 5   RVESFIEHQDACNLRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATP--LR 64
           RVESFIEHQD C +R  RS      L     Q ++ + + T ++  N+ +  ++    L 
Sbjct: 185 RVESFIEHQDTCTVR--RSQPSNHRLHEQ--QQHTTNATQTASTAENNENGDLSIGPILP 244

Query: 65  GFPIL------SSNLDRNININFPNHHDLELHL----SSPSSAFLKLSIGSNKEAKEERQ 124
           G P+       S      +   F  +  +EL L    +      L LSIG+  + K   +
Sbjct: 245 GHPLQRRQSPPSEQQPSTLLYPFVTNGSIELQLLPSRNCADETSLSLSIGT-MDQKTMSE 304

Query: 125 LDLAIAEKAYA----EEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEATRK 184
           ++    EK       EEARRE KRQIEIAE+EFA AK IRQ A+AEL KA + +EEA+R+
Sbjct: 305 VEKKSYEKGETSLEREEARRETKRQIEIAELEFAEAKRIRQHARAELHKAHLFREEASRR 364

Query: 185 MSSTIMEITCQTCRLHFH----------MSSVTPEETSLAISYMSSATTEGD 211
           +S+T+M+ITC  C+ HF            +  T E TSLA+SYMSSATTEG+
Sbjct: 365 ISATMMQITCHNCKQHFQAPAALVPPPPQTHCTDESTSLAVSYMSSATTEGE 411

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BLAST of CmoCh04G022470 vs. Swiss-Prot
Match: IDD16_ARATH (Protein indeterminate-domain 16 OS=Arabidopsis thaliana GN=IDD16 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-21
Identity = 84/220 (38.18%), Postives = 116/220 (52.73%), Query Frame = 1


Query: 5   RVESFIEHQDACNLRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGF 64
           RVESFIEHQD C +RQ      P       LQ ++  +     +TS   +      L G 
Sbjct: 155 RVESFIEHQDTCTIRQ------PQPTNHRHLQQHTMGLDAPSRTTS---TASFGPLLHGL 214

Query: 65  PILSSNLDRN---------ININFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQL-- 124
           P+L      N          N +      LEL LS       + S  +    K E  L  
Sbjct: 215 PLLRPPRPSNQHSPAFAYPFNASSAPFESLELQLSI---GMARTSAQARHNEKRETSLTK 274

Query: 125 DLAIAEKAYAEEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEATRKMSSTI 184
           + A  E   AEE R+EAKRQIE+AE +F  AK IR++A+ ELEKA +++EEA +++++T+
Sbjct: 275 ERANEEARKAEETRQEAKRQIEMAEKDFEKAKRIREEAKTELEKAHVVREEAIKRINATM 334

Query: 185 MEITCQTCRLHFHMSSVTPEET-SLAISYMSSATTEGDGE 213
           MEITC +C+  F +     E T SL +SY+SSATTEG+ E
Sbjct: 335 MEITCHSCKQLFQLPVTADESTSSLVMSYVSSATTEGECE 362

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BLAST of CmoCh04G022470 vs. TrEMBL
Match: A0A0A0KJ22_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G092930 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 1.7e-86
Identity = 183/217 (84.33%), Postives = 194/217 (89.40%), Query Frame = 1


Query: 5   RVESFIEHQDACNLRQLRSD------APPPLLPPPLLQPY-SRSISYTGASTSNDHSFQM 64
           RVESFIEHQD CNLR +RSD        PP  PP LLQPY SRS+SYTGASTSNDH+FQM
Sbjct: 183 RVESFIEHQDTCNLRHMRSDQLQSAVVRPPPPPPLLLQPYNSRSVSYTGASTSNDHAFQM 242

Query: 65  A-TPLRGFPILSSNLDRNININFPNHHDLELHLSSPSSAFLKLSIGS-NKEAKEERQLDL 124
           A TPLRGFPILSSN DRNININ P+ HDLELHLSSPSSAFLKLSIGS NKE  ++RQL+L
Sbjct: 243 ASTPLRGFPILSSNSDRNININLPDRHDLELHLSSPSSAFLKLSIGSSNKEPNDDRQLEL 302

Query: 125 AIAEKAYAEEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEATRKMSSTIME 184
           AIAEKAYA+EARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEA+RKM+STIME
Sbjct: 303 AIAEKAYADEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEASRKMNSTIME 362

Query: 185 ITCQTCRLHFHMSSVTPEETSLAISYMSSATTEGDGE 213
           ITCQTCRLHFH+SS  PEETSLAISYMSSATTEGDGE
Sbjct: 363 ITCQTCRLHFHVSSAMPEETSLAISYMSSATTEGDGE 399

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BLAST of CmoCh04G022470 vs. TrEMBL
Match: B9HJL4_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0008s13980g PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 8.2e-41
Identity = 121/230 (52.61%), Postives = 150/230 (65.22%), Query Frame = 1


Query: 5   RVESFIEHQDACNLRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGF 64
           RVESFIEHQDAC +R     A P L     LQP   S + +  S S+D +F +A PL G 
Sbjct: 172 RVESFIEHQDACTVR----GAQPEL---QALQPACSSRTASSTSPSSDANFNIA-PLPGI 231

Query: 65  PILSSN------LDRN-ININFPNHHDLELHL------------SSPSSAFLKLSIGSNK 124
           P+           DRN  + +    H+LEL L              P +A LKLSIGS K
Sbjct: 232 PMSKPTEQVYLCSDRNDASTSSQQEHNLELQLLPSSSNHLPQNPDEPHAANLKLSIGSTK 291

Query: 125 EAK-EERQLDLAIAEKAYAEEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEE 184
             +    QL LA+ EKAYAEEAR++AKRQIE+AE+EFANAK IRQQAQ+ELEKA++LKE+
Sbjct: 292 LKEFTNEQLRLAMTEKAYAEEARQQAKRQIEMAELEFANAKRIRQQAQSELEKAQLLKEQ 351

Query: 185 ATRKMSSTIMEITCQTCRLHFHMSSVT--PEETSLAISYMSSATTEGDGE 213
           AT+K+SSTIM++TCQ C+  FH S+     +ETSLA+SYMSSATTEGDGE
Sbjct: 352 ATKKLSSTIMQVTCQVCKQQFHASTAAAPADETSLAMSYMSSATTEGDGE 393

[Close]

BLAST of CmoCh04G022470 vs. TrEMBL
Match: A0A0D2QEG8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G171100 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.2e-37
Identity = 121/245 (49.39%), Postives = 154/245 (62.86%), Query Frame = 1


Query: 5   RVESFIEHQDACNLRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGF 64
           RVESFIEHQDAC +R+++ +    L P       SR+ S T  S S+D +F +A PL G 
Sbjct: 174 RVESFIEHQDACTIRRVQPELQAQLQPAAACS--SRTASST--SPSSDANFSIA-PLHGL 233

Query: 65  PILSSNLDRNI--NINFPNH------HDLELHLSSPSSA-----------FLKLSIGSN- 124
           PI  S     +   ++  +H      H+LEL L   S+A            LKLSIGSN 
Sbjct: 234 PITKSTEPVFLYKRVSGSDHQRQQLQHNLELQLLPSSTANSRDSDEEYATHLKLSIGSND 293

Query: 125 ---KEAKEER------------QLDLAIAEKAYAEEARREAKRQIEIAEVEFANAKMIRQ 184
              K A E              QL LA+AEKAYAE+AR+EAKRQIE+AE+EFA+AK IRQ
Sbjct: 294 GGEKNASETTLEATRLKEFASGQLKLAMAEKAYAEKARQEAKRQIEMAELEFASAKRIRQ 353

Query: 185 QAQAELEKARILKEEATRKMSSTIMEITCQTCRLHFHMSSVT--PEETSLAISYMSSATT 213
           QAQ ELEKA+ LK++AT+K+S+TIM+ITCQTC+  F  S+     +ETSLA+SYMSSATT
Sbjct: 354 QAQGELEKAQALKDQATKKISATIMQITCQTCKHQFQTSTAAGPDDETSLAMSYMSSATT 413

[Close]

BLAST of CmoCh04G022470 vs. TrEMBL
Match: A0A0D2MC69_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G171100 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.2e-37
Identity = 121/245 (49.39%), Postives = 154/245 (62.86%), Query Frame = 1


Query: 5   RVESFIEHQDACNLRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGF 64
           RVESFIEHQDAC +R+++ +    L P       SR+ S T  S S+D +F +A PL G 
Sbjct: 98  RVESFIEHQDACTIRRVQPELQAQLQPAAACS--SRTASST--SPSSDANFSIA-PLHGL 157

Query: 65  PILSSNLDRNI--NINFPNH------HDLELHLSSPSSA-----------FLKLSIGSN- 124
           PI  S     +   ++  +H      H+LEL L   S+A            LKLSIGSN 
Sbjct: 158 PITKSTEPVFLYKRVSGSDHQRQQLQHNLELQLLPSSTANSRDSDEEYATHLKLSIGSND 217

Query: 125 ---KEAKEER------------QLDLAIAEKAYAEEARREAKRQIEIAEVEFANAKMIRQ 184
              K A E              QL LA+AEKAYAE+AR+EAKRQIE+AE+EFA+AK IRQ
Sbjct: 218 GGEKNASETTLEATRLKEFASGQLKLAMAEKAYAEKARQEAKRQIEMAELEFASAKRIRQ 277

Query: 185 QAQAELEKARILKEEATRKMSSTIMEITCQTCRLHFHMSSVT--PEETSLAISYMSSATT 213
           QAQ ELEKA+ LK++AT+K+S+TIM+ITCQTC+  F  S+     +ETSLA+SYMSSATT
Sbjct: 278 QAQGELEKAQALKDQATKKISATIMQITCQTCKHQFQTSTAAGPDDETSLAMSYMSSATT 337

[Close]

BLAST of CmoCh04G022470 vs. TrEMBL
Match: A0A067KTA4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04826 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-36
Identity = 118/263 (44.87%), Postives = 155/263 (58.94%), Query Frame = 1


Query: 5   RVESFIEHQDACNLRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGF 64
           RVESFIEHQDAC +R+ + +          LQP   S + +  S S+D +F + TPL+G 
Sbjct: 177 RVESFIEHQDACTVRRTQPEL-------QALQPACSSRTASSTSPSSDANFSI-TPLQGL 236

Query: 65  PI---------LSSNLDRNININFPNH--HDLELHLSSPSS-------------AFLKLS 124
           PI         L S+ DR       +H  H+LEL L   S+               LKLS
Sbjct: 237 PIPKPSDQPVFLYSSSDRYDASTSSHHQEHNLELQLLPSSTTRMLQNPDQERYPTNLKLS 296

Query: 125 IGS-------NKEAKEER--------------------QLDLAIAEKAYAEEARREAKRQ 184
           IGS       N +  +E+                    Q+ LA+AEKAYAEEAR++AKRQ
Sbjct: 297 IGSSDRTIEKNNDGNKEKNMANDSTGEEAARLKEIANEQMKLAMAEKAYAEEARQQAKRQ 356

Query: 185 IEIAEVEFANAKMIRQQAQAELEKARILKEEATRKMSSTIMEITCQTCRLHFHMSSVT-- 213
           +E+AE+EFANAK IRQQ+QAELEKA++L+E+AT+K+SSTIM+ITCQ C+ HF   +    
Sbjct: 357 LEMAELEFANAKRIRQQSQAELEKAQVLREQATKKISSTIMQITCQACKQHFQAPAAAVA 416

[Close]

BLAST of CmoCh04G022470 vs. TAIR10
Match: AT2G01940.3 (AT2G01940.3 C2H2-like zinc finger protein)

HSP 1 Score: 126.3 bits (316), Expect = 2.2e-29
Identity = 100/260 (38.46%), Postives = 136/260 (52.31%), Query Frame = 1


Query: 5   RVESFIEHQDACNLRQLRSDAPPP-----LLPP------PLLQPYSRSISYTGASTSNDH 64
           RVESFIEHQD C+ R++  + P P      +P         +   S   +Y G       
Sbjct: 189 RVESFIEHQDNCSARRVHREPPRPPQTAVTVPACSSRTASTVSTPSSETNYGGTV----- 248

Query: 65  SFQMATPLRGFPI-------LSSNLDRNININF----------PNHHDLELHLSSPS--- 124
           +     PL G PI       + +N   N+N+            PN  + +  +  PS   
Sbjct: 249 AVTTPQPLEGRPIHQRISSSILTNSSNNLNLELQLLPLSSNQNPNQENQQQKVKEPSHHH 308

Query: 125 -----SAFLKLSIGSNKEAKEERQLD-------------LAIAEKAYAEEARREAKRQIE 184
                +  L LSI  +   +     D             +A+ EKAYAEEA+REAKRQ E
Sbjct: 309 NHNHDTTNLNLSIAPSSSYQHYNNFDRIKEIMASEQIMKIAMKEKAYAEEAKREAKRQRE 368

Query: 185 IAEVEFANAKMIRQQAQAELEKARILKEEATRKMSSTIMEITCQTCRLHFHMSSV---TP 213
           IAE EFANAK IRQ+AQAELE+A+ LKE++ +K+SSTIM++TCQTC+  F   +V   T 
Sbjct: 369 IAENEFANAKKIRQKAQAELERAKFLKEQSMKKISSTIMQVTCQTCKGQFQAVAVPAATA 428

[Close]

BLAST of CmoCh04G022470 vs. TAIR10
Match: AT1G68130.1 (AT1G68130.1 indeterminate(ID)-domain 14)

HSP 1 Score: 111.7 bits (278), Expect = 5.6e-25
Identity = 91/232 (39.22%), Postives = 126/232 (54.31%), Query Frame = 1


Query: 5   RVESFIEHQDACNLRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATP--LR 64
           RVESFIEHQD C +R  RS      L     Q ++ + + T ++  N+ +  ++    L 
Sbjct: 185 RVESFIEHQDTCTVR--RSQPSNHRLHEQ--QQHTTNATQTASTAENNENGDLSIGPILP 244

Query: 65  GFPIL------SSNLDRNININFPNHHDLELHL----SSPSSAFLKLSIGSNKEAKEERQ 124
           G P+       S      +   F  +  +EL L    +      L LSIG+  + K   +
Sbjct: 245 GHPLQRRQSPPSEQQPSTLLYPFVTNGSIELQLLPSRNCADETSLSLSIGT-MDQKTMSE 304

Query: 125 LDLAIAEKAYA----EEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEATRK 184
           ++    EK       EEARRE KRQIEIAE+EFA AK IRQ A+AEL KA + +EEA+R+
Sbjct: 305 VEKKSYEKGETSLEREEARRETKRQIEIAELEFAEAKRIRQHARAELHKAHLFREEASRR 364

Query: 185 MSSTIMEITCQTCRLHFH----------MSSVTPEETSLAISYMSSATTEGD 211
           +S+T+M+ITC  C+ HF            +  T E TSLA+SYMSSATTEG+
Sbjct: 365 ISATMMQITCHNCKQHFQAPAALVPPPPQTHCTDESTSLAVSYMSSATTEGE 411

[Close]

BLAST of CmoCh04G022470 vs. TAIR10
Match: AT1G25250.1 (AT1G25250.1 indeterminate(ID)-domain 16)

HSP 1 Score: 104.4 bits (259), Expect = 9.0e-23
Identity = 84/220 (38.18%), Postives = 116/220 (52.73%), Query Frame = 1


Query: 5   RVESFIEHQDACNLRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGF 64
           RVESFIEHQD C +RQ      P       LQ ++  +     +TS   +      L G 
Sbjct: 155 RVESFIEHQDTCTIRQ------PQPTNHRHLQQHTMGLDAPSRTTS---TASFGPLLHGL 214

Query: 65  PILSSNLDRN---------ININFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQL-- 124
           P+L      N          N +      LEL LS       + S  +    K E  L  
Sbjct: 215 PLLRPPRPSNQHSPAFAYPFNASSAPFESLELQLSI---GMARTSAQARHNEKRETSLTK 274

Query: 125 DLAIAEKAYAEEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEATRKMSSTI 184
           + A  E   AEE R+EAKRQIE+AE +F  AK IR++A+ ELEKA +++EEA +++++T+
Sbjct: 275 ERANEEARKAEETRQEAKRQIEMAEKDFEKAKRIREEAKTELEKAHVVREEAIKRINATM 334

Query: 185 MEITCQTCRLHFHMSSVTPEET-SLAISYMSSATTEGDGE 213
           MEITC +C+  F +     E T SL +SY+SSATTEG+ E
Sbjct: 335 MEITCHSCKQLFQLPVTADESTSSLVMSYVSSATTEGECE 362

[Close]

BLAST of CmoCh04G022470 vs. TAIR10
Match: AT3G48550.1 (AT3G48550.1 BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3))

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-11
Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = 1


Query: 82  HHDLELHLS---SPSSAFLKLSIGSNKEAKEE--RQLDLAIAEKAYAEEARREAKRQIEI 141
           HHDL+L LS   S  S   +L  G  +  K +   Q+ LA  EKAYAE  R   +R++E+
Sbjct: 48  HHDLDLKLSISLSSISTAEELPNGGVEALKWQAAEQIRLAAIEKAYAERVRELTRREMEM 107

Query: 142 AEVEFANAKMIRQQAQAELEKARILKEEATRKMSSTIMEITCQTCRLHF 186
           A+ EFA A+++ Q+A+ E+E+A  LKE +  K+ +  +EITC +CR  F
Sbjct: 108 AQSEFARARVMWQKAREEVERAERLKERSMTKIDTACLEITCHSCRQRF 156

[Close]

BLAST of CmoCh04G022470 vs. NCBI nr
Match: gi|778698389|ref|XP_004150157.2| (PREDICTED: protein SHOOT GRAVITROPISM 5 [Cucumis sativus])

HSP 1 Score: 327.0 bits (837), Expect = 2.4e-86
Identity = 183/217 (84.33%), Postives = 194/217 (89.40%), Query Frame = 1


Query: 5   RVESFIEHQDACNLRQLRSD------APPPLLPPPLLQPY-SRSISYTGASTSNDHSFQM 64
           RVESFIEHQD CNLR +RSD        PP  PP LLQPY SRS+SYTGASTSNDH+FQM
Sbjct: 183 RVESFIEHQDTCNLRHMRSDQLQSAVVRPPPPPPLLLQPYNSRSVSYTGASTSNDHAFQM 242

Query: 65  A-TPLRGFPILSSNLDRNININFPNHHDLELHLSSPSSAFLKLSIGS-NKEAKEERQLDL 124
           A TPLRGFPILSSN DRNININ P+ HDLELHLSSPSSAFLKLSIGS NKE  ++RQL+L
Sbjct: 243 ASTPLRGFPILSSNSDRNININLPDRHDLELHLSSPSSAFLKLSIGSSNKEPNDDRQLEL 302

Query: 125 AIAEKAYAEEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEATRKMSSTIME 184
           AIAEKAYA+EARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEA+RKM+STIME
Sbjct: 303 AIAEKAYADEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEASRKMNSTIME 362

Query: 185 ITCQTCRLHFHMSSVTPEETSLAISYMSSATTEGDGE 213
           ITCQTCRLHFH+SS  PEETSLAISYMSSATTEGDGE
Sbjct: 363 ITCQTCRLHFHVSSAMPEETSLAISYMSSATTEGDGE 399

[Close]

BLAST of CmoCh04G022470 vs. NCBI nr
Match: gi|659072719|ref|XP_008466889.1| (PREDICTED: protein SHOOT GRAVITROPISM 5 [Cucumis melo])

HSP 1 Score: 327.0 bits (837), Expect = 2.4e-86
Identity = 183/217 (84.33%), Postives = 194/217 (89.40%), Query Frame = 1


Query: 5   RVESFIEHQDACNLRQLRSD------APPPLLPPPLLQPY-SRSISYTGASTSNDHSFQM 64
           RVESFIEHQD CNLR +RSD        PP  PP LLQPY SR++SYTGASTSNDH+FQM
Sbjct: 183 RVESFIEHQDTCNLRHMRSDQLQSAVVRPPPPPPLLLQPYNSRAVSYTGASTSNDHAFQM 242

Query: 65  A-TPLRGFPILSSNLDRNININFPNHHDLELHLSSPSSAFLKLSIGS-NKEAKEERQLDL 124
           A TPLRGFPILSSN DRNININ P+ HDLELHLSSPSSAFLKLSIGS NKE  ++RQL+L
Sbjct: 243 ASTPLRGFPILSSNSDRNININLPDRHDLELHLSSPSSAFLKLSIGSSNKEPSDDRQLEL 302

Query: 125 AIAEKAYAEEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEATRKMSSTIME 184
           AIAEKAYA+EARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEA+RKMSSTIME
Sbjct: 303 AIAEKAYADEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEASRKMSSTIME 362

Query: 185 ITCQTCRLHFHMSSVTPEETSLAISYMSSATTEGDGE 213
           ITCQTCRLHFH+SS  PEETSLAISYMSSATTEGDGE
Sbjct: 363 ITCQTCRLHFHVSSAMPEETSLAISYMSSATTEGDGE 399

[Close]

BLAST of CmoCh04G022470 vs. NCBI nr
Match: gi|224099625|ref|XP_002311555.1| (zinc finger family protein [Populus trichocarpa])

HSP 1 Score: 175.3 bits (443), Expect = 1.2e-40
Identity = 121/230 (52.61%), Postives = 150/230 (65.22%), Query Frame = 1


Query: 5   RVESFIEHQDACNLRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGF 64
           RVESFIEHQDAC +R     A P L     LQP   S + +  S S+D +F +A PL G 
Sbjct: 172 RVESFIEHQDACTVR----GAQPEL---QALQPACSSRTASSTSPSSDANFNIA-PLPGI 231

Query: 65  PILSSN------LDRN-ININFPNHHDLELHL------------SSPSSAFLKLSIGSNK 124
           P+           DRN  + +    H+LEL L              P +A LKLSIGS K
Sbjct: 232 PMSKPTEQVYLCSDRNDASTSSQQEHNLELQLLPSSSNHLPQNPDEPHAANLKLSIGSTK 291

Query: 125 EAK-EERQLDLAIAEKAYAEEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEE 184
             +    QL LA+ EKAYAEEAR++AKRQIE+AE+EFANAK IRQQAQ+ELEKA++LKE+
Sbjct: 292 LKEFTNEQLRLAMTEKAYAEEARQQAKRQIEMAELEFANAKRIRQQAQSELEKAQLLKEQ 351

Query: 185 ATRKMSSTIMEITCQTCRLHFHMSSVT--PEETSLAISYMSSATTEGDGE 213
           AT+K+SSTIM++TCQ C+  FH S+     +ETSLA+SYMSSATTEGDGE
Sbjct: 352 ATKKLSSTIMQVTCQVCKQQFHASTAAAPADETSLAMSYMSSATTEGDGE 393

[Close]

BLAST of CmoCh04G022470 vs. NCBI nr
Match: gi|763747883|gb|KJB15322.1| (hypothetical protein B456_002G171100 [Gossypium raimondii])

HSP 1 Score: 162.9 bits (411), Expect = 6.0e-37
Identity = 121/245 (49.39%), Postives = 154/245 (62.86%), Query Frame = 1


Query: 5   RVESFIEHQDACNLRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGF 64
           RVESFIEHQDAC +R+++ +    L P       SR+ S T  S S+D +F +A PL G 
Sbjct: 98  RVESFIEHQDACTIRRVQPELQAQLQPAAACS--SRTASST--SPSSDANFSIA-PLHGL 157

Query: 65  PILSSNLDRNI--NINFPNH------HDLELHLSSPSSA-----------FLKLSIGSN- 124
           PI  S     +   ++  +H      H+LEL L   S+A            LKLSIGSN 
Sbjct: 158 PITKSTEPVFLYKRVSGSDHQRQQLQHNLELQLLPSSTANSRDSDEEYATHLKLSIGSND 217

Query: 125 ---KEAKEER------------QLDLAIAEKAYAEEARREAKRQIEIAEVEFANAKMIRQ 184
              K A E              QL LA+AEKAYAE+AR+EAKRQIE+AE+EFA+AK IRQ
Sbjct: 218 GGEKNASETTLEATRLKEFASGQLKLAMAEKAYAEKARQEAKRQIEMAELEFASAKRIRQ 277

Query: 185 QAQAELEKARILKEEATRKMSSTIMEITCQTCRLHFHMSSVT--PEETSLAISYMSSATT 213
           QAQ ELEKA+ LK++AT+K+S+TIM+ITCQTC+  F  S+     +ETSLA+SYMSSATT
Sbjct: 278 QAQGELEKAQALKDQATKKISATIMQITCQTCKHQFQTSTAAGPDDETSLAMSYMSSATT 337

[Close]

BLAST of CmoCh04G022470 vs. NCBI nr
Match: gi|823134754|ref|XP_012467178.1| (PREDICTED: protein SHOOT GRAVITROPISM 5-like [Gossypium raimondii])

HSP 1 Score: 162.9 bits (411), Expect = 6.0e-37
Identity = 121/245 (49.39%), Postives = 154/245 (62.86%), Query Frame = 1


Query: 5   RVESFIEHQDACNLRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGF 64
           RVESFIEHQDAC +R+++ +    L P       SR+ S T  S S+D +F +A PL G 
Sbjct: 174 RVESFIEHQDACTIRRVQPELQAQLQPAAACS--SRTASST--SPSSDANFSIA-PLHGL 233

Query: 65  PILSSNLDRNI--NINFPNH------HDLELHLSSPSSA-----------FLKLSIGSN- 124
           PI  S     +   ++  +H      H+LEL L   S+A            LKLSIGSN 
Sbjct: 234 PITKSTEPVFLYKRVSGSDHQRQQLQHNLELQLLPSSTANSRDSDEEYATHLKLSIGSND 293

Query: 125 ---KEAKEER------------QLDLAIAEKAYAEEARREAKRQIEIAEVEFANAKMIRQ 184
              K A E              QL LA+AEKAYAE+AR+EAKRQIE+AE+EFA+AK IRQ
Sbjct: 294 GGEKNASETTLEATRLKEFASGQLKLAMAEKAYAEKARQEAKRQIEMAELEFASAKRIRQ 353

Query: 185 QAQAELEKARILKEEATRKMSSTIMEITCQTCRLHFHMSSVT--PEETSLAISYMSSATT 213
           QAQ ELEKA+ LK++AT+K+S+TIM+ITCQTC+  F  S+     +ETSLA+SYMSSATT
Sbjct: 354 QAQGELEKAQALKDQATKKISATIMQITCQTCKHQFQTSTAAGPDDETSLAMSYMSSATT 413

The following BLAST results are available for this feature:

BLAST of CmoCh04G022470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IDD15_ARATH	3.9e-28	38.46	Protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana GN=SGR5 PE=1 SV=1	[more]
IDD14_ARATH	1.0e-23	39.22	Protein indeterminate-domain 14 OS=Arabidopsis thaliana GN=IDD14 PE=1 SV=1	[more]
IDD16_ARATH	1.6e-21	38.18	Protein indeterminate-domain 16 OS=Arabidopsis thaliana GN=IDD16 PE=2 SV=1	[more]

BLAST of CmoCh04G022470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJ22_CUCSA	1.7e-86	84.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G092930 PE=4 SV=1	[more]
B9HJL4_POPTR	8.2e-41	52.61	Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0008s13980g PE=4 SV=1	[more]
A0A0D2QEG8_GOSRA	4.2e-37	49.39	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G171100 PE=4 SV=1	[more]
A0A0D2MC69_GOSRA	4.2e-37	49.39	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G171100 PE=4 SV=1	[more]
A0A067KTA4_JATCU	1.2e-36	44.87	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04826 PE=4 SV=1	[more]

BLAST of CmoCh04G022470 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01940.3	2.2e-29	38.46	C2H2-like zinc finger protein	[more]
AT1G68130.1	5.6e-25	39.22	indeterminate(ID)-domain 14	[more]
AT1G25250.1	9.0e-23	38.18	indeterminate(ID)-domain 16	[more]
AT3G48550.1	3.5e-11	41.28	BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger pr...	[more]

BLAST of CmoCh04G022470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778698389\|ref\|XP_004150157.2\|	2.4e-86	84.33	PREDICTED: protein SHOOT GRAVITROPISM 5 [Cucumis sativus]	[more]
gi\|659072719\|ref\|XP_008466889.1\|	2.4e-86	84.33	PREDICTED: protein SHOOT GRAVITROPISM 5 [Cucumis melo]	[more]
gi\|224099625\|ref\|XP_002311555.1\|	1.2e-40	52.61	zinc finger family protein [Populus trichocarpa]	[more]
gi\|763747883\|gb\|KJB15322.1\|	6.0e-37	49.39	hypothetical protein B456_002G171100 [Gossypium raimondii]	[more]
gi\|823134754\|ref\|XP_012467178.1\|	6.0e-37	49.39	PREDICTED: protein SHOOT GRAVITROPISM 5-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009630	gravitropism
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G022470.1	CmoCh04G022470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 113..168 scor
None	No IPR available	PANTHER	PTHR34946	FAMILY NOT NAMED	coord: 3..198 score: 1.2
None	No IPR available	PANTHER	PTHR34946:SF2	PROTEIN SHOOT GRAVITROPISM 5	coord: 3..198 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G022470	Carg25260	Silver-seed gourd	carcmoB1189

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G022470	Cucumber (Gy14) v2	cgybcmoB629
CmoCh04G022470	Melon (DHL92) v3.6.1	cmomedB714
CmoCh04G022470	Silver-seed gourd	carcmoB1121
CmoCh04G022470	Cucumber (Chinese Long) v3	cmocucB0850
CmoCh04G022470	Watermelon (97103) v2	cmowmbB676
CmoCh04G022470	Wax gourd	cmowgoB0823
CmoCh04G022470	Cucurbita moschata (Rifu)	cmocmoB262
CmoCh04G022470	Cucumber (Gy14) v1	cgycmoB1061
CmoCh04G022470	Cucurbita maxima (Rimu)	cmacmoB309
CmoCh04G022470	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G022470	Wild cucumber (PI 183967)	cmocpiB727
CmoCh04G022470	Cucumber (Chinese Long) v2	cmocuB719
CmoCh04G022470	Melon (DHL92) v3.5.1	cmomeB625
CmoCh04G022470	Watermelon (Charleston Gray)	cmowcgB636
CmoCh04G022470	Watermelon (97103) v1	cmowmB706
CmoCh04G022470	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G022470	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G022470	Bottle gourd (USVL1VR-Ls)	cmolsiB610