Carg25260 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25260
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein SHOOT GRAVITROPISM 5
Location	Cucurbita_argyrosperma_scaffold_210 : 220131 .. 221710 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTACAGCTTCTTCTTCTGGTGGTTCTCCACCTCCTCCACCCAATTCTGACCATGGGGTCACCAGTAAAAGAAAGAGAAGACCAGCAGGAACCCCAGGTAAATTTTAACCAAATTTAACCCATTTAACTCATTTTCAATCCAAAGTTTGAATCTTTTTCAATTTTTATCCATACCCATCTCATAAAAATTCAAACTTGAATTCACTTTTGTGTTGTTGCATTAGATCCAGATGCTGAAGTGGTTTCCTTATCGCCAAAAACCCTTTTGGAATCGGATCGGTATGTTTGTGAAATATGCAACCAAGGGTTCCAAAGGGATCAGAATCTTCAAATGCACCGCCGCCGCCACAAGGTGCCGTGGAAGCTACTCAAGAGAGCGGAGACGGCGGAGGCAGTCAAGAAAAAGGTGTTCGTTTGTCCTGAACCCACTTGTCTCCACCATGACCCTCGCCATGCCCTTGGTGACCTCGTCGGTATCAAAAAACACTTCCGGAGAAAGCATAGCAATCAAAAGCATTGGGTTTGTGACAAATGCTCTAAGGCTTATGCTGTTCATTCTGATTTCAAAGCTCATCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGTGGCCGTGTCTTTTCTAGGTCCTCTCTCTCTCTCTCTAACTTTTCAATTTTATAGTTCGTGTTCATAGATATTTGAACCCGAGTATTCGAGAAAAAGCAGAATAACGAGTTCGACCTAATTTAGCATTACGAATTTCTCGAATTTTGCATATGATATTGTCCATTTTAATCTTAAATTCAATACCCGCTTCCCAATTTTTAACTTTTCGATATAAAATTATCGACTACATTCTTTTAGCTTCGACTTTCGTTTTTCGAGGCTTTGGATAACTTGATATGGAAGAAATAAGGTAATGTTTAGGTTGAATTGTATTGATAACTAATATTACATAGTATTTTTCAGAGTGGAGAGCTTCATAGAACACCAAGATGCTTGTAATCTCCGGCAGCTGAGGTCCGATGCACCGCCGCCGTTGCTACCACCGCCATTACTACAACCCTACTCACGATCGATTTCTTACACCGGTGCCTCGACCAGCAACGATCATAGCTTTCAAATGGCTACACCATTACGAGGGTTTCCAATTTTATCATCGAACTTAGATCGAAACATCAACATTAATTTTCCGAATCACCATGATCTCGAGCTTCATCTTTCATCTCCAAGCTCGGCGTTTCTTAAACTCTCAATTGGGTCAAACAAGGAGGCGAAGGAAGAGCGTCAGCTCGATTTGGCGATCGCCGAGAAAGCTTACGCAGAAGAAGCACGACGAGAGGCGAAACGACAGATCGAGATCGCCGAGGTCGAGTTCGCAAATGCAAAAATGATACGACAACAAGCTCAAGCAGAGTTGGAAAAAGCTAGGATCTTGAAGGAAGAAGCCACAAGGAAAATGAGCTCCACAATTATGGAAATCACTTGCCAAACTTGTCGGCTACACTTCCATATGAGCTCCGTTACACCGGAGGAGACCTCATTGGCCATTAGCTACATGTCATCCGCTACAACAGAAGGTGATGGAGAGTGA

mRNA sequence

GCTACAGCTTCTTCTTCTGGTGGTTCTCCACCTCCTCCACCCAATTCTGACCATGGGGTCACCAGTAAAAGAAAGAGAAGACCAGCAGGAACCCCAGTATTTTTCAGAGTGGAGAGCTTCATAGAACACCAAGATGCTTGTAATCTCCGGCAGCTGAGGTCCGATGCACCGCCGCCGTTGCTACCACCGCCATTACTACAACCCTACTCACGATCGATTTCTTACACCGGTGCCTCGACCAGCAACGATCATAGCTTTCAAATGGCTACACCATTACGAGGGTTTCCAATTTTATCATCGAACTTAGATCGAAACATCAACATTAATTTTCCGAATCACCATGATCTCGAGCTTCATCTTTCATCTCCAAGCTCGGCGTTTCTTAAACTCTCAATTGGGTCAAACAAGGAGGCGAAGGAAGAGCGTCAGCTCGATTTGGCGATCGCCGAGAAAGCTTACGCAGAAGAAGCACGACGAGAGGCGAAACGACAGATCGAGATCGCCGAGGTCGAGTTCGCAAATGCAAAAATGATACGACAACAAGCTCAAGCAGAGTTGGAAAAAGCTAGGATCTTGAAGGAAGAAGCCACAAGGAAAATGAGCTCCACAATTATGGAAATCACTTGCCAAACTTGTCGGCTACACTTCCATATGAGCTCCGTTACACCGGAGGAGACCTCATTGGCCATTAGCTACATGTCATCCGCTACAACAGAAGGTGATGGAGAGTGA

Coding sequence (CDS)

GCTACAGCTTCTTCTTCTGGTGGTTCTCCACCTCCTCCACCCAATTCTGACCATGGGGTCACCAGTAAAAGAAAGAGAAGACCAGCAGGAACCCCAGTATTTTTCAGAGTGGAGAGCTTCATAGAACACCAAGATGCTTGTAATCTCCGGCAGCTGAGGTCCGATGCACCGCCGCCGTTGCTACCACCGCCATTACTACAACCCTACTCACGATCGATTTCTTACACCGGTGCCTCGACCAGCAACGATCATAGCTTTCAAATGGCTACACCATTACGAGGGTTTCCAATTTTATCATCGAACTTAGATCGAAACATCAACATTAATTTTCCGAATCACCATGATCTCGAGCTTCATCTTTCATCTCCAAGCTCGGCGTTTCTTAAACTCTCAATTGGGTCAAACAAGGAGGCGAAGGAAGAGCGTCAGCTCGATTTGGCGATCGCCGAGAAAGCTTACGCAGAAGAAGCACGACGAGAGGCGAAACGACAGATCGAGATCGCCGAGGTCGAGTTCGCAAATGCAAAAATGATACGACAACAAGCTCAAGCAGAGTTGGAAAAAGCTAGGATCTTGAAGGAAGAAGCCACAAGGAAAATGAGCTCCACAATTATGGAAATCACTTGCCAAACTTGTCGGCTACACTTCCATATGAGCTCCGTTACACCGGAGGAGACCTCATTGGCCATTAGCTACATGTCATCCGCTACAACAGAAGGTGATGGAGAGTGA

Protein sequence

ATASSSGGSPPPPPNSDHGVTSKRKRRPAGTPVFFRVESFIEHQDACNLRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGFPILSSNLDRNININFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQLDLAIAEKAYAEEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEATRKMSSTIMEITCQTCRLHFHMSSVTPEETSLAISYMSSATTEGDGE

Homology

[Close]

BLAST of Carg25260 vs. NCBI nr
Match: XP_022955982.1 (protein SHOOT GRAVITROPISM 5-like [Cucurbita moschata])

HSP 1 Score: 318.5 bits (815), Expect = 1.9e-83
Identity = 210/211 (99.53%), Postives = 210/211 (99.53%), Query Frame = 0


Query: 33  VFFRVESFIEHQDACNLRQLRSDAPPPLLXXXXXQPYSRSISYTGASTSNDHSFQMATPL 92
           VF RVESFIEHQDACNLRQLRSDAPPPLLXXXXXQPYSRSISYTGASTSNDHSFQMATPL
Sbjct: 175 VFSRVESFIEHQDACNLRQLRSDAPPPLLXXXXXQPYSRSISYTGASTSNDHSFQMATPL 234

Query: 93  RGFPILSSNLDRNININFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQLDLAIAEKA 152
           RGFPILSSNLDRNININFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQLDLAIAEKA
Sbjct: 235 RGFPILSSNLDRNININFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQLDLAIAEKA 294

Query: 153 YAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEEATRKMSSTIMEITCQTC 212
           YAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEEATRKMSSTIMEITCQTC
Sbjct: 295 YAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEEATRKMSSTIMEITCQTC 354

Query: 213 RLHFHMSSVTPEETSLAISYMSSATTEGDGE 244
           RLHFHMSSVTPEETSLAISYMSSATTEGDGE
Sbjct: 355 RLHFHMSSVTPEETSLAISYMSSATTEGDGE 385

[Close]

BLAST of Carg25260 vs. NCBI nr
Match: XP_023528793.1 (protein SHOOT GRAVITROPISM 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 316.2 bits (809), Expect = 9.5e-83
Identity = 209/211 (99.05%), Postives = 209/211 (99.05%), Query Frame = 0


Query: 33  VFFRVESFIEHQDACNLRQLRSDAPPPLLXXXXXQPYSRSISYTGASTSNDHSFQMATPL 92
           VF RVESFIEHQDACNLRQLRSDAPPPLLXXXXXQPYSRSISYTGASTS DHSFQMATPL
Sbjct: 175 VFSRVESFIEHQDACNLRQLRSDAPPPLLXXXXXQPYSRSISYTGASTSTDHSFQMATPL 234

Query: 93  RGFPILSSNLDRNININFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQLDLAIAEKA 152
           RGFPILSSNLDRNININFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQLDLAIAEKA
Sbjct: 235 RGFPILSSNLDRNININFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQLDLAIAEKA 294

Query: 153 YAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEEATRKMSSTIMEITCQTC 212
           YAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEEATRKMSSTIMEITCQTC
Sbjct: 295 YAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEEATRKMSSTIMEITCQTC 354

Query: 213 RLHFHMSSVTPEETSLAISYMSSATTEGDGE 244
           RLHFHMSSVTPEETSLAISYMSSATTEGDGE
Sbjct: 355 RLHFHMSSVTPEETSLAISYMSSATTEGDGE 385

[Close]

BLAST of Carg25260 vs. NCBI nr
Match: XP_022991065.1 (protein SHOOT GRAVITROPISM 5-like [Cucurbita maxima])

HSP 1 Score: 311.2 bits (796), Expect = 3.0e-81
Identity = 202/211 (95.73%), Postives = 203/211 (96.21%), Query Frame = 0


Query: 33  VFFRVESFIEHQDACNLRQLRSDAPPPLLXXXXXQPYSRSISYTGASTSNDHSFQMATPL 92
           VF RVESFIEHQDACNLRQLRSDAPP LL     QPYSRSISYTGASTSNDHSFQ ATPL
Sbjct: 175 VFSRVESFIEHQDACNLRQLRSDAPPLLLPPPLLQPYSRSISYTGASTSNDHSFQTATPL 234

Query: 93  RGFPILSSNLDRNININFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQLDLAIAEKA 152
           RGFPILSSNLDRNININFPNHHDLELHLSSPSSAFLKLSIGSNKEAK+ERQLDLAIAEKA
Sbjct: 235 RGFPILSSNLDRNININFPNHHDLELHLSSPSSAFLKLSIGSNKEAKDERQLDLAIAEKA 294

Query: 153 YAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEEATRKMSSTIMEITCQTC 212
           YAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEEATRKMSSTIMEITCQTC
Sbjct: 295 YAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEEATRKMSSTIMEITCQTC 354

Query: 213 RLHFHMSSVTPEETSLAISYMSSATTEGDGE 244
           RLHFHMSSVTPEETSLAISYMSSATTEGDGE
Sbjct: 355 RLHFHMSSVTPEETSLAISYMSSATTEGDGE 385

[Close]

BLAST of Carg25260 vs. NCBI nr
Match: XP_008466889.1 (PREDICTED: protein SHOOT GRAVITROPISM 5 [Cucumis melo])

HSP 1 Score: 250.8 bits (639), Expect = 4.9e-63
Identity = 179/220 (81.36%), Postives = 190/220 (86.36%), Query Frame = 0


Query: 33  VFFRVESFIEHQDACNLRQLRSD------APPPLLXXXXXQPY-SRSISYTGASTSNDHS 92
           VF RVESFIEHQD CNLR +RSD            XXXXXQPY SR++SYTGASTSNDH+
Sbjct: 180 VFSRVESFIEHQDTCNLRHMRSDQLQSAXXXXXXXXXXXXQPYNSRAVSYTGASTSNDHA 239

Query: 93  FQMA-TPLRGFPILSSNLDRNININFPNHHDLELHLSSPSSAFLKLSIG-SNKEAKEERQ 152
           FQMA TPLRGFPILSSN DRNININ P+ HDLELHLSSPSSAFLKLSIG SNKE  ++RQ
Sbjct: 240 FQMASTPLRGFPILSSNSDRNININLPDRHDLELHLSSPSSAFLKLSIGSSNKEPSDDRQ 299

Query: 153 LDLAIAEKAYAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEEATRKMSST 212
           L+LAIAEKAYA+E     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEEA+RKMSST
Sbjct: 300 LELAIAEKAYADEARREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEEASRKMSST 359

Query: 213 IMEITCQTCRLHFHMSSVTPEETSLAISYMSSATTEGDGE 244
           IMEITCQTCRLHFH+SS  PEETSLAISYMSSATTEGDGE
Sbjct: 360 IMEITCQTCRLHFHVSSAMPEETSLAISYMSSATTEGDGE 399

[Close]

BLAST of Carg25260 vs. NCBI nr
Match: XP_004150157.2 (PREDICTED: protein SHOOT GRAVITROPISM 5 [Cucumis sativus] >KGN49735.1 hypothetical protein Csa_5G092930 [Cucumis sativus])

HSP 1 Score: 250.8 bits (639), Expect = 4.9e-63
Identity = 179/220 (81.36%), Postives = 190/220 (86.36%), Query Frame = 0


Query: 33  VFFRVESFIEHQDACNLRQLRSD------APPPLLXXXXXQPY-SRSISYTGASTSNDHS 92
           VF RVESFIEHQD CNLR +RSD            XXXXXQPY SRS+SYTGASTSNDH+
Sbjct: 180 VFSRVESFIEHQDTCNLRHMRSDQLQSAXXXXXXXXXXXXQPYNSRSVSYTGASTSNDHA 239

Query: 93  FQMA-TPLRGFPILSSNLDRNININFPNHHDLELHLSSPSSAFLKLSIG-SNKEAKEERQ 152
           FQMA TPLRGFPILSSN DRNININ P+ HDLELHLSSPSSAFLKLSIG SNKE  ++RQ
Sbjct: 240 FQMASTPLRGFPILSSNSDRNININLPDRHDLELHLSSPSSAFLKLSIGSSNKEPNDDRQ 299

Query: 153 LDLAIAEKAYAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEEATRKMSST 212
           L+LAIAEKAYA+E     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEEA+RKM+ST
Sbjct: 300 LELAIAEKAYADEARREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEEASRKMNST 359

Query: 213 IMEITCQTCRLHFHMSSVTPEETSLAISYMSSATTEGDGE 244
           IMEITCQTCRLHFH+SS  PEETSLAISYMSSATTEGDGE
Sbjct: 360 IMEITCQTCRLHFHVSSAMPEETSLAISYMSSATTEGDGE 399

[Close]

BLAST of Carg25260 vs. TAIR10
Match: AT1G68130.1 (indeterminate(ID)-domain 14)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-10
Identity = 67/251 (26.69%), Postives = 94/251 (37.45%), Query Frame = 0


Query: 33  VFFRVESFIEHQDACNLRQLRSDAPPPLLXXXXXQPYSRSISYTGASTSNDHSFQMATPL 92
           VF RVESFIEHQD C +R  RS      L        +          + +    +   L
Sbjct: 182 VFSRVESFIEHQDTCTVR--RSQPSNHRLHEQQQHTTNAXXXXXXXXNNENGDLSIGPIL 241

Query: 93  RGFPIL------SSNLDRNININFPNHHDLELHL----SSPSSAFLKLSIGS-------- 152
            G P+       S      +   F  +  +EL L    +      L LSIG+        
Sbjct: 242 PGHPLQRRQSPPSEQQPSTLLYPFVTNGSIELQLLPSRNCADETSLSLSIGTMDQKTMSE 301

Query: 153 --------------NKEAKEERQLDLAIAEKAYAEEXXXXXXXXXXXXXXXXXXXXXXXX 212
                          +EA+ E +  + IAE  +AE                         
Sbjct: 302 VEKKSYEKGETSLEREEARRETKRQIEIAELEFAE-------------------AKRIRQ 361

Query: 213 XXXXXXXXXXXLKEEATRKMSSTIMEITCQTCRLHFH----------MSSVTPEETSLAI 242
                       +EEA+R++S+T+M+ITC  C+ HF            +  T E TSLA+
Sbjct: 362 HARAELHKAHLFREEASRRISATMMQITCHNCKQHFQAPAALVPPPPQTHCTDESTSLAV 411

[Close]

BLAST of Carg25260 vs. TAIR10
Match: AT2G01940.3 (C2H2-like zinc finger protein)

HSP 1 Score: 48.9 bits (115), Expect = 5.1e-06
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 200 MSSTIMEITCQTCRLHFHMSSV---TPEETSLAISYMSSATTEGDGE 244
           +SSTIM++TCQTC+  F   +V   T +ETSL +SYMSSA T+G+ E
Sbjct: 397 ISSTIMQVTCQTCKGQFQAVAVPAATADETSLVVSYMSSANTDGELE 443

[Close]

BLAST of Carg25260 vs. TAIR10
Match: AT1G25250.1 (indeterminate(ID)-domain 16)

HSP 1 Score: 43.9 bits (102), Expect = 1.6e-04
Identity = 91/223 (40.81%), Postives = 112/223 (50.22%), Query Frame = 0


Query: 33  VFFRVESFIEHQDACNLRQLRSDAPPPLLXXXXXQPYSRSISYTGASTSNDHSFQMATPL 92
           VF RVESFIEHQD C +RQ      P        Q ++  +     +TS   +      L
Sbjct: 152 VFSRVESFIEHQDTCTIRQ------PQPTNHRHLQQHTMGLDAPSRTTS---TASFGPLL 211

Query: 93  RGFPILSSNLDRN---------ININFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQ 152
            G P+L      N          N +      LEL L   S    + S  +    K E  
Sbjct: 212 HGLPLLRPPRPSNQHSPAFAYPFNASSAPFESLELQL---SIGMARTSAQARHNEKRETS 271

Query: 153 L--DLAIAEKAYAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEEATRKMS 212
           L  +           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        ++
Sbjct: 272 LTKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIN 331

Query: 213 STIMEITCQTCRLHFHMSSVTPEET-SLAISYMSSATTEGDGE 244
           +T+MEITC +C+  F +     E T SL +SY+SSATTEG+ E
Sbjct: 332 ATMMEITCHSCKQLFQLPVTADESTSSLVMSYVSSATTEGECE 362

[Close]

BLAST of Carg25260 vs. Swiss-Prot
Match: sp|Q9C9X7|IDD14_ARATH (Protein indeterminate-domain 14 OS=Arabidopsis thaliana OX=3702 GN=IDD14 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.6e-09
Identity = 67/251 (26.69%), Postives = 94/251 (37.45%), Query Frame = 0


Query: 33  VFFRVESFIEHQDACNLRQLRSDAPPPLLXXXXXQPYSRSISYTGASTSNDHSFQMATPL 92
           VF RVESFIEHQD C +R  RS      L        +          + +    +   L
Sbjct: 182 VFSRVESFIEHQDTCTVR--RSQPSNHRLHEQQQHTTNAXXXXXXXXNNENGDLSIGPIL 241

Query: 93  RGFPIL------SSNLDRNININFPNHHDLELHL----SSPSSAFLKLSIGS-------- 152
            G P+       S      +   F  +  +EL L    +      L LSIG+        
Sbjct: 242 PGHPLQRRQSPPSEQQPSTLLYPFVTNGSIELQLLPSRNCADETSLSLSIGTMDQKTMSE 301

Query: 153 --------------NKEAKEERQLDLAIAEKAYAEEXXXXXXXXXXXXXXXXXXXXXXXX 212
                          +EA+ E +  + IAE  +AE                         
Sbjct: 302 VEKKSYEKGETSLEREEARRETKRQIEIAELEFAE-------------------AKRIRQ 361

Query: 213 XXXXXXXXXXXLKEEATRKMSSTIMEITCQTCRLHFH----------MSSVTPEETSLAI 242
                       +EEA+R++S+T+M+ITC  C+ HF            +  T E TSLA+
Sbjct: 362 HARAELHKAHLFREEASRRISATMMQITCHNCKQHFQAPAALVPPPPQTHCTDESTSLAV 411

[Close]

BLAST of Carg25260 vs. Swiss-Prot
Match: sp|F4IPE3|IDD15_ARATH (Protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana OX=3702 GN=SGR5 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 9.2e-05
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 200 MSSTIMEITCQTCRLHFHMSSV---TPEETSLAISYMSSATTEGDGE 244
           +SSTIM++TCQTC+  F   +V   T +ETSL +SYMSSA T+G+ E
Sbjct: 396 ISSTIMQVTCQTCKGQFQAVAVPAATADETSLVVSYMSSANTDGELE 442

[Close]

BLAST of Carg25260 vs. TrEMBL
Match: tr|A0A1S3CS86|A0A1S3CS86_CUCME (protein SHOOT GRAVITROPISM 5 OS=Cucumis melo OX=3656 GN=LOC103504214 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.2e-63
Identity = 179/220 (81.36%), Postives = 190/220 (86.36%), Query Frame = 0


Query: 33  VFFRVESFIEHQDACNLRQLRSD------APPPLLXXXXXQPY-SRSISYTGASTSNDHS 92
           VF RVESFIEHQD CNLR +RSD            XXXXXQPY SR++SYTGASTSNDH+
Sbjct: 180 VFSRVESFIEHQDTCNLRHMRSDQLQSAXXXXXXXXXXXXQPYNSRAVSYTGASTSNDHA 239

Query: 93  FQMA-TPLRGFPILSSNLDRNININFPNHHDLELHLSSPSSAFLKLSIG-SNKEAKEERQ 152
           FQMA TPLRGFPILSSN DRNININ P+ HDLELHLSSPSSAFLKLSIG SNKE  ++RQ
Sbjct: 240 FQMASTPLRGFPILSSNSDRNININLPDRHDLELHLSSPSSAFLKLSIGSSNKEPSDDRQ 299

Query: 153 LDLAIAEKAYAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEEATRKMSST 212
           L+LAIAEKAYA+E     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEEA+RKMSST
Sbjct: 300 LELAIAEKAYADEARREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEEASRKMSST 359

Query: 213 IMEITCQTCRLHFHMSSVTPEETSLAISYMSSATTEGDGE 244
           IMEITCQTCRLHFH+SS  PEETSLAISYMSSATTEGDGE
Sbjct: 360 IMEITCQTCRLHFHVSSAMPEETSLAISYMSSATTEGDGE 399

[Close]

BLAST of Carg25260 vs. TrEMBL
Match: tr|A0A0A0KJ22|A0A0A0KJ22_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G092930 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.2e-63
Identity = 179/220 (81.36%), Postives = 190/220 (86.36%), Query Frame = 0


Query: 33  VFFRVESFIEHQDACNLRQLRSD------APPPLLXXXXXQPY-SRSISYTGASTSNDHS 92
           VF RVESFIEHQD CNLR +RSD            XXXXXQPY SRS+SYTGASTSNDH+
Sbjct: 180 VFSRVESFIEHQDTCNLRHMRSDQLQSAXXXXXXXXXXXXQPYNSRSVSYTGASTSNDHA 239

Query: 93  FQMA-TPLRGFPILSSNLDRNININFPNHHDLELHLSSPSSAFLKLSIG-SNKEAKEERQ 152
           FQMA TPLRGFPILSSN DRNININ P+ HDLELHLSSPSSAFLKLSIG SNKE  ++RQ
Sbjct: 240 FQMASTPLRGFPILSSNSDRNININLPDRHDLELHLSSPSSAFLKLSIGSSNKEPNDDRQ 299

Query: 153 LDLAIAEKAYAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEEATRKMSST 212
           L+LAIAEKAYA+E     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEEA+RKM+ST
Sbjct: 300 LELAIAEKAYADEARREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEEASRKMNST 359

Query: 213 IMEITCQTCRLHFHMSSVTPEETSLAISYMSSATTEGDGE 244
           IMEITCQTCRLHFH+SS  PEETSLAISYMSSATTEGDGE
Sbjct: 360 IMEITCQTCRLHFHVSSAMPEETSLAISYMSSATTEGDGE 399

[Close]

BLAST of Carg25260 vs. TrEMBL
Match: tr|B9HJL4|B9HJL4_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G140400v3 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.6e-22
Identity = 126/233 (54.08%), Postives = 148/233 (63.52%), Query Frame = 0


Query: 33  VFFRVESFIEHQDACNLRQLRSDAPPPLLXXXXXQPYSRSISYTGASTSNDHSFQMATPL 92
           VF RVESFIEHQDAC +R     A P L      QP   S + +  S S+D +F +A PL
Sbjct: 169 VFSRVESFIEHQDACTVR----GAQPEL---QALQPACSSRTASSTSPSSDANFNIA-PL 228

Query: 93  RGFPILSSN------LDRN-ININFPNHHDLELHL------------SSPSSAFLKLSIG 152
            G P+           DRN  + +    H+LEL L              P +A LKLSIG
Sbjct: 229 PGIPMSKPTEQVYLCSDRNDASTSSQQEHNLELQLLPSSSNHLPQNPDEPHAANLKLSIG 288

Query: 153 SNK-EAKEERQLDLAIAEKAYAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL 212
           S K +     QL LA+ EKAYAEE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 289 STKLKEFTNEQLRLAMTEKAYAEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 348

Query: 213 KEEATRKMSSTIMEITCQTCRLHFHMSSVT--PEETSLAISYMSSATTEGDGE 244
             +AT+K+SSTIM++TCQ C+  FH S+     +ETSLA+SYMSSATTEGDGE
Sbjct: 349 XXQATKKLSSTIMQVTCQVCKQQFHASTAAAPADETSLAMSYMSSATTEGDGE 393

[Close]

BLAST of Carg25260 vs. TrEMBL
Match: tr|A0A2P4M0B5|A0A2P4M0B5_QUESU (Protein shoot gravitropism 5 OS=Quercus suber OX=58331 GN=CFP56_03508 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.7e-19
Identity = 119/257 (46.30%), Postives = 149/257 (57.98%), Query Frame = 0


Query: 33  VFFRVESFIEHQDACNLRQLRSDAPPPLLXXXXXQPYSRSISYTGASTSNDHSFQMA--- 92
           VF RVESFIEHQD CN+R  R     P +        SR+ S T  S+ N ++F +A   
Sbjct: 168 VFSRVESFIEHQDTCNVRHSR-----PEIQALQPACSSRTASSTSPSSDNTNNFSIAPLP 227

Query: 93  ---TPLRGFPI-LSSNLDRNININFPNHHDLELHLSSPSSAF-LKLSIGSNKEAKE---- 152
              TP    P+ L+S  +   + +    H+LEL L   S+A  LKLSIGS+ +  E    
Sbjct: 228 GLSTPKPTEPVFLTSEQNNAPSTSKARQHNLELQLLPSSNALSLKLSIGSSCDGGERNES 287

Query: 153 --------------------------------ERQLDLAIAEKAYAEEXXXXXXXXXXXX 212
                                             +L LA+AE+AYAEE    XXXXXXXX
Sbjct: 288 NKPNLDTSKRPINENGVVNEQTLEVTRLKDFASEELKLAMAERAYAEEARREXXXXXXXX 347

Query: 213 XXXXXXXXXXXXXXXXXXXXXXXLKEEATRKMSSTIMEITCQTCRLHFHMSSVT--PEET 244
           XXXXXXXXXXXXXXXXXXXXXXXLKE+A +K+SST+++ITCQ C+  FH S+V    +E 
Sbjct: 348 XXXXXXXXXXXXXXXXXXXXXXXLKEQAIKKISSTMLQITCQACKQQFHASTVVSPSDEI 407

[Close]

BLAST of Carg25260 vs. TrEMBL
Match: tr|A0A067KTA4|A0A067KTA4_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04826 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.4e-18
Identity = 126/266 (47.37%), Postives = 155/266 (58.27%), Query Frame = 0


Query: 33  VFFRVESFIEHQDACNLRQLRSDAPPPLLXXXXXQPYSRSISYTGASTSNDHSFQMATPL 92
           VF RVESFIEHQDAC +R+ + +           QP   S + +  S S+D +F + TPL
Sbjct: 174 VFSRVESFIEHQDACTVRRTQPE-------LQALQPACSSRTASSTSPSSDANFSI-TPL 233

Query: 93  RGFPI---------LSSNLDRNININFPNH--HDLELHLSSPSS-------------AFL 152
           +G PI         L S+ DR       +H  H+LEL L   S+               L
Sbjct: 234 QGLPIPKPSDQPVFLYSSSDRYDASTSSHHQEHNLELQLLPSSTTRMLQNPDQERYPTNL 293

Query: 153 KLSIGS-------NKEAKEER--------------------QLDLAIAEKAYAEEXXXXX 212
           KLSIGS       N +  +E+                    Q+ LA+AEKAYAE XXXXX
Sbjct: 294 KLSIGSSDRTIEKNNDGNKEKNMANDSTGEEAARLKEIANEQMKLAMAEKAYAEXXXXXX 353

Query: 213 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEEATRKMSSTIMEITCQTCRLHFHMSSV 244
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +E+AT+K+SSTIM+ITCQ C+ HF   + 
Sbjct: 354 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREQATKKISSTIMQITCQACKQHFQAPAA 413

The following BLAST results are available for this feature:

BLAST of Carg25260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955982.1	1.9e-83	99.53	protein SHOOT GRAVITROPISM 5-like [Cucurbita moschata]	[more]
XP_023528793.1	9.5e-83	99.05	protein SHOOT GRAVITROPISM 5-like [Cucurbita pepo subsp. pepo]	[more]
XP_022991065.1	3.0e-81	95.73	protein SHOOT GRAVITROPISM 5-like [Cucurbita maxima]	[more]
XP_008466889.1	4.9e-63	81.36	PREDICTED: protein SHOOT GRAVITROPISM 5 [Cucumis melo]	[more]
XP_004150157.2	4.9e-63	81.36	PREDICTED: protein SHOOT GRAVITROPISM 5 [Cucumis sativus] >KGN49735.1 hypothetic...	[more]

BLAST of Carg25260 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68130.1	2.0e-10	26.69	indeterminate(ID)-domain 14	[more]
AT2G01940.3	5.1e-06	55.32	C2H2-like zinc finger protein	[more]
AT1G25250.1	1.6e-04	40.81	indeterminate(ID)-domain 16	[more]

BLAST of Carg25260 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C9X7\|IDD14_ARATH	3.6e-09	26.69	Protein indeterminate-domain 14 OS=Arabidopsis thaliana OX=3702 GN=IDD14 PE=1 SV...	[more]
sp\|F4IPE3\|IDD15_ARATH	9.2e-05	55.32	Protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana OX=3702 GN=SGR5 PE=1 SV=1	[more]

BLAST of Carg25260 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CS86\|A0A1S3CS86_CUCME	3.2e-63	81.36	protein SHOOT GRAVITROPISM 5 OS=Cucumis melo OX=3656 GN=LOC103504214 PE=4 SV=1	[more]
tr\|A0A0A0KJ22\|A0A0A0KJ22_CUCSA	3.2e-63	81.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G092930 PE=4 SV=1	[more]
tr\|B9HJL4\|B9HJL4_POPTR	3.6e-22	54.08	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G140400v3 PE=...	[more]
tr\|A0A2P4M0B5\|A0A2P4M0B5_QUESU	1.7e-19	46.30	Protein shoot gravitropism 5 OS=Quercus suber OX=58331 GN=CFP56_03508 PE=4 SV=1	[more]
tr\|A0A067KTA4\|A0A067KTA4_JATCU	1.4e-18	47.37	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04826 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0009630	gravitropism

Vocabulary: **INTERPRO**
Term	Definition
IPR039288	SGR5

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009630	gravitropism
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25260-RA	Carg25260-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 144..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR34946:SF6	PROTEIN SHOOT GRAVITROPISM 5	coord: 33..243
IPR039288	Protein SHOOT GRAVITROPISM 5	PANTHER	PTHR34946	FAMILY NOT NAMED	coord: 33..243

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25260	Cla005819	Watermelon (97103) v1	carwmB0883
Carg25260	Csa5G092930	Cucumber (Chinese Long) v2	carcuB0894
Carg25260	MELO3C005237	Melon (DHL92) v3.5.1	carmeB0869
Carg25260	ClCG01G006810	Watermelon (Charleston Gray)	carwcgB0856
Carg25260	CSPI05G01940	Wild cucumber (PI 183967)	carcpiB0914
Carg25260	CmaCh04G021520	Cucurbita maxima (Rimu)	carcmaB1220
Carg25260	CmaCh15G008780	Cucurbita maxima (Rimu)	carcmaB1219
Carg25260	CmoCh04G022470	Cucurbita moschata (Rifu)	carcmoB1189
Carg25260	CmoCh15G009130	Cucurbita moschata (Rifu)	carcmoB1188
Carg25260	Lsi09G007190	Bottle gourd (USVL1VR-Ls)	carlsiB799
Carg25260	Cp4.1LG13g06460	Cucurbita pepo (Zucchini)	carcpeB1227
Carg25260	Cp4.1LG01g18590	Cucurbita pepo (Zucchini)	carcpeB1228
Carg25260	MELO3C005237.2	Melon (DHL92) v3.6.1	carmedB0878
Carg25260	CsaV3_5G017150	Cucumber (Chinese Long) v3	carcucB0918
Carg25260	Cla97C01G007170	Watermelon (97103) v2	carwmbB0919
Carg25260	Bhi12G000857	Wax gourd	carwgoB1027

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25260	Carg01329	Silver-seed gourd	carcarB624

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25260	Cucumber (Gy14) v1	carcgyB1001