CmoCh04G021270 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G021270
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUbiquitin, putative
LocationCmo_Chr04 : 14103993 .. 14104340 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAACGCCGCCGCTGCAGCCGTCGACGACAACGACAACGACGACGGCGGCGGCTGTGACGGTGGCAACGAGTGGGTCGTCGAAGAATAAGTTGAAAGTAATGGTGCAACTGAAATTTGAGAACTCAAAGATATCAATGGAAGTGAGCCCAACGGATAACGTGGGGAAATTGAAGAAAGAGCTGCATAAGCTACAGCAGAGACTGCATTTTCATCTGCCACCAGAGGATTTCTTTTTCATTTATGACCGCGACGTTATGGACGAAGACCGCTCCTTCCATTGGCATGGTGTGGCCCACGGTGATACCATTGAGATCTTCAATAGCAACGTTTCTGGCGGATCTTAA

mRNA sequence

ATGACAACGCCGCCGCTGCAGCCGTCGACGACAACGACAACGACGACGGCGGCGGCTGTGACGGTGGCAACGAGTGGGTCGTCGAAGAATAAGTTGAAAGTAATGGTGCAACTGAAATTTGAGAACTCAAAGATATCAATGGAAGTGAGCCCAACGGATAACGTGGGGAAATTGAAGAAAGAGCTGCATAAGCTACAGCAGAGACTGCATTTTCATCTGCCACCAGAGGATTTCTTTTTCATTTATGACCGCGACGTTATGGACGAAGACCGCTCCTTCCATTGGCATGGTGTGGCCCACGGTGATACCATTGAGATCTTCAATAGCAACGTTTCTGGCGGATCTTAA

Coding sequence (CDS)

ATGACAACGCCGCCGCTGCAGCCGTCGACGACAACGACAACGACGACGGCGGCGGCTGTGACGGTGGCAACGAGTGGGTCGTCGAAGAATAAGTTGAAAGTAATGGTGCAACTGAAATTTGAGAACTCAAAGATATCAATGGAAGTGAGCCCAACGGATAACGTGGGGAAATTGAAGAAAGAGCTGCATAAGCTACAGCAGAGACTGCATTTTCATCTGCCACCAGAGGATTTCTTTTTCATTTATGACCGCGACGTTATGGACGAAGACCGCTCCTTCCATTGGCATGGTGTGGCCCACGGTGATACCATTGAGATCTTCAATAGCAACGTTTCTGGCGGATCTTAA
Homology
[Close]
BLAST of CmoCh04G021270 vs. TrEMBL
Match: F6H7K3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0116g00470 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 8.4e-24
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 1 

Query: 23  ATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIY 82
           A SGS   +LK+MV  K    K+ +EV+P DNVG+L+KEL KL QR  FHLPPE +FFIY
Sbjct: 192 AASGSGSKRLKLMVMSKCGTKKVPVEVNPLDNVGELRKELEKLDQRFQFHLPPEGYFFIY 251

Query: 83  DRDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS 116
            ++VMD+DRSF WH V  GDT+EIFN  V+GGS
Sbjct: 252 KQNVMDDDRSFRWHHVGQGDTVEIFNGCVTGGS 284

[Close]
BLAST of CmoCh04G021270 vs. TrEMBL
Match: A5AW52_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033883 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 8.4e-24
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 1 

Query: 23  ATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIY 82
           A SGS   +LK+MV  K    K+ +EV+P DNVG+L+KEL KL QR  FHLPPE +FFIY
Sbjct: 192 AASGSGSKRLKLMVMSKCGTKKVPVEVNPLDNVGELRKELEKLDQRFQFHLPPEGYFFIY 251

Query: 83  DRDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS 116
            ++VMD+DRSF WH V  GDT+EIFN  V+GGS
Sbjct: 252 KQNVMDDDRSFRWHHVGQGDTVEIFNGCVTGGS 284

[Close]
BLAST of CmoCh04G021270 vs. TrEMBL
Match: M5WRM5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022934mg PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 7.1e-23
Identity = 61/115 (53.04%), Postives = 81/115 (70.43%), Query Frame = 1 

Query: 6   LQPSTTTTTTTAAAVTVATSGS-----SKNKLKVMVQLKFENSKISMEVSPTDNVGKLKK 65
           L+PS T     A+ + +   G+     S+NKLK+MV  K    KI +E++P+DNVG+L+K
Sbjct: 171 LRPSPTAAAAVASPLAMGGPGAGGVAVSRNKLKLMVLPKCGTKKIPVEMNPSDNVGELRK 230

Query: 66  ELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS 116
           EL KL  RLHFHLP E +FFIY ++VM++DRSF WH V  GDTIEIFN +V+GGS
Sbjct: 231 ELQKLHHRLHFHLPQESYFFIYKQNVMEDDRSFRWHQVGQGDTIEIFNGSVTGGS 285

[Close]
BLAST of CmoCh04G021270 vs. TrEMBL
Match: K7K0W4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G073000 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.6e-22
Identity = 53/93 (56.99%), Postives = 71/93 (76.34%), Query Frame = 1 

Query: 23  ATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIY 82
           A++     +LK+MV  K    K+ +EV+P+DNVG+L+KEL KL QR+ FHLP + +FFIY
Sbjct: 175 ASASPGSKRLKLMVLPKSGTKKVPVEVNPSDNVGELRKELQKLHQRVQFHLPQDGYFFIY 234

Query: 83  DRDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS 116
            ++VMD+DRSF WH VA GDTIEIFN +V+GGS
Sbjct: 235 KQNVMDDDRSFRWHHVAQGDTIEIFNGSVTGGS 267

[Close]
BLAST of CmoCh04G021270 vs. TrEMBL
Match: V7CQE9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G250900g PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.6e-22
Identity = 53/85 (62.35%), Postives = 67/85 (78.82%), Query Frame = 1 

Query: 31  KLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDED 90
           KLKVMV  K    K+++EV+  DNVG+L+KEL KL QR+ FHLP + +FFIY ++VMD+D
Sbjct: 175 KLKVMVLPKSGMKKVAVEVNACDNVGELRKELQKLHQRIQFHLPQDGYFFIYKQNVMDDD 234

Query: 91  RSFHWHGVAHGDTIEIFNSNVSGGS 116
           RSF WH V HGDTIEIFN +V+GGS
Sbjct: 235 RSFRWHHVVHGDTIEIFNGSVTGGS 259

[Close]
BLAST of CmoCh04G021270 vs. TAIR10
Match: AT4G05230.1 (AT4G05230.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 94.0 bits (232), Expect = 6.6e-20
Identity = 57/117 (48.72%), Postives = 76/117 (64.96%), Query Frame = 1 

Query: 8   PSTTTTTTTA-----AAVTVATSGSSKN----KLKVMVQLKFENSKISMEVSPTDNVGKL 67
           P + +T  T+     + V +  S ++ N    KL+VMV  K    KI ++V+  DNVG+L
Sbjct: 90  PQSNSTEQTSNGHHESTVMIPMSNNNNNNNPKKLRVMVLPKSGTRKIPVDVNAGDNVGEL 149

Query: 68  KKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS 116
           +KEL K+QQR    LP E +FFIY ++VMDE+RSF WH V  GDTIEIFN +VSGGS
Sbjct: 150 RKELAKIQQRFQLSLPQEGYFFIYKQNVMDENRSFRWHRVDQGDTIEIFNGSVSGGS 206

[Close]
BLAST of CmoCh04G021270 vs. TAIR10
Match: AT4G03370.1 (AT4G03370.1 Ubiquitin family protein)

HSP 1 Score: 71.6 bits (174), Expect = 3.5e-13
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 1 

Query: 31  KLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDED 90
           K+ VMVQ   E  +I +EV+   NV  L+KEL K+Q+R   +LP E FFFI+ +DV+ ED
Sbjct: 199 KITVMVQPFEETRRIQVEVNVLSNVEVLRKELVKMQERGELNLPHEGFFFIHKQDVLRED 258

Query: 91  RSFHWHGVAHGDTIEIFNSNVS 113
           +SF  + VA GDTIEIF   V+
Sbjct: 259 QSFMANRVAPGDTIEIFQGYVT 280

[Close]
BLAST of CmoCh04G021270 vs. TAIR10
Match: AT4G03360.1 (AT4G03360.1 Ubiquitin family protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-08
Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 1 

Query: 31  KLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRD--VMD 90
           K+ VMVQ       I +EV+  DNV +L+KEL K+Q+R   +LP   ++ I+     V+ 
Sbjct: 197 KMIVMVQPYGYTRMIQVEVTADDNVEELRKELVKMQERGELNLPQGMYYLIHKHKQAVLH 256

Query: 91  EDRSFHWHGVAHGDTIEI 107
           ED+SF  +GVA+GDTI+I
Sbjct: 257 EDQSFLTNGVAYGDTIQI 274

[Close]
BLAST of CmoCh04G021270 vs. TAIR10
Match: AT4G02950.1 (AT4G02950.1 Ubiquitin family protein)

HSP 1 Score: 55.1 bits (131), Expect = 3.4e-08
Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 1 

Query: 31  KLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRD--VMD 90
           K+ VM+Q       I +EV+  DNV +L+KEL K+Q+R   +LP   ++ I+     V+ 
Sbjct: 231 KMIVMLQPYGYTRMIQVEVTADDNVEELRKELVKMQERGELNLPQGMYYLIHKHKQAVLH 290

Query: 91  EDRSFHWHGVAHGDTIEI 107
           ED+SF  +GVA+GDTI+I
Sbjct: 291 EDQSFLTNGVAYGDTIQI 308

[Close]
BLAST of CmoCh04G021270 vs. NCBI nr
Match: gi|449434372|ref|XP_004134970.1| (PREDICTED: uncharacterized protein LOC101208852 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-32
Identity = 72/92 (78.26%), Postives = 79/92 (85.87%), Query Frame = 1 

Query: 24  TSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYD 83
           TS  + NKLKVMV+ K  NSKI MEV+PTDNVG+LKKEL KLQQR+ FHLPPE FFFIYD
Sbjct: 106 TSTKNSNKLKVMVKPKCGNSKIPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYD 165

Query: 84  RDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS 116
           RDVMDEDRSF WHGVAHGDTIEIFN  ++GGS
Sbjct: 166 RDVMDEDRSFRWHGVAHGDTIEIFNGTITGGS 197

[Close]
BLAST of CmoCh04G021270 vs. NCBI nr
Match: gi|659078890|ref|XP_008439960.1| (PREDICTED: polyubiquitin-B-like [Cucumis melo])

HSP 1 Score: 146.0 bits (367), Expect = 4.1e-32
Identity = 71/92 (77.17%), Postives = 79/92 (85.87%), Query Frame = 1 

Query: 24  TSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYD 83
           TS  + NKLKVMV+ K  +SKI MEV+PTDNVG+LKKEL KLQQR+ FHLPPE FFFIYD
Sbjct: 107 TSTKNSNKLKVMVKPKCGSSKIPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYD 166

Query: 84  RDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS 116
           RDVMDEDRSF WHGVAHGDTIEIFN  ++GGS
Sbjct: 167 RDVMDEDRSFRWHGVAHGDTIEIFNGTITGGS 198

[Close]
BLAST of CmoCh04G021270 vs. NCBI nr
Match: gi|470107386|ref|XP_004290028.1| (PREDICTED: polyubiquitin-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 122.9 bits (307), Expect = 3.7e-25
Identity = 66/110 (60.00%), Postives = 82/110 (74.55%), Query Frame = 1 

Query: 6   LQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKL 65
           L+PS T   +  AA TV  S  SKNKLK+MV  K    KIS+EV+ +DNVG+L+KEL KL
Sbjct: 165 LRPSPTAAASAVAATTV--SPRSKNKLKLMVLPKCGTKKISVEVNASDNVGELRKELQKL 224

Query: 66  QQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS 116
            QRLHFHLP E +FFIY ++VMD+D+SF WH V  GDTIEIFN +++GGS
Sbjct: 225 HQRLHFHLPQESYFFIYKQNVMDDDKSFRWHHVGQGDTIEIFNGSITGGS 272

[Close]
BLAST of CmoCh04G021270 vs. NCBI nr
Match: gi|645236530|ref|XP_008224781.1| (PREDICTED: ubiquitin-like protein-NEDD8-like protein RUB3 [Prunus mume])

HSP 1 Score: 118.2 bits (295), Expect = 9.2e-24
Identity = 63/115 (54.78%), Postives = 82/115 (71.30%), Query Frame = 1 

Query: 6   LQPSTTTTTTTAAAVTVATSGS-----SKNKLKVMVQLKFENSKISMEVSPTDNVGKLKK 65
           L+PS T     A+ V +  +G      S+NKLK+MV  K    KI +E++P+DNVG+L+K
Sbjct: 170 LRPSPTAVAAVASPVAMGGTGGAGVAVSRNKLKLMVLPKCGTKKIPVEMNPSDNVGELRK 229

Query: 66  ELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS 116
           EL KL QRLHFHLP E +FFIY ++VM++DRSF WH V  GDTIEIFN +V+GGS
Sbjct: 230 ELQKLHQRLHFHLPQESYFFIYKQNVMEDDRSFRWHQVGQGDTIEIFNGSVTGGS 284

[Close]
BLAST of CmoCh04G021270 vs. NCBI nr
Match: gi|147781462|emb|CAN76119.1| (hypothetical protein VITISV_033883 [Vitis vinifera])

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-23
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 1 

Query: 23  ATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIY 82
           A SGS   +LK+MV  K    K+ +EV+P DNVG+L+KEL KL QR  FHLPPE +FFIY
Sbjct: 192 AASGSGSKRLKLMVMSKCGTKKVPVEVNPLDNVGELRKELEKLDQRFQFHLPPEGYFFIY 251

Query: 83  DRDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS 116
            ++VMD+DRSF WH V  GDT+EIFN  V+GGS
Sbjct: 252 KQNVMDDDRSFRWHHVGQGDTVEIFNGCVTGGS 284

The following BLAST results are available for this feature:
BLAST of CmoCh04G021270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G021270 vs. TrEMBL
Match NameE-valueIdentityDescription
F6H7K3_VITVI8.4e-2460.22Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0116g00470 PE=4 SV=... [more]
A5AW52_VITVI8.4e-2460.22Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033883 PE=4 SV=1[more]
M5WRM5_PRUPE7.1e-2353.04Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022934mg PE=4 SV=1[more]
K7K0W4_SOYBN4.6e-2256.99Uncharacterized protein OS=Glycine max GN=GLYMA_10G073000 PE=4 SV=1[more]
V7CQE9_PHAVU4.6e-2262.35Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G250900g PE=4 SV=1[more]
BLAST of CmoCh04G021270 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G05230.16.6e-2048.72 Ubiquitin-like superfamily protein[more]
AT4G03370.13.5e-1350.00 Ubiquitin family protein[more]
AT4G03360.11.5e-0843.59 Ubiquitin family protein[more]
AT4G02950.13.4e-0842.31 Ubiquitin family protein[more]
BLAST of CmoCh04G021270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449434372|ref|XP_004134970.1|1.1e-3278.26PREDICTED: uncharacterized protein LOC101208852 [Cucumis sativus][more]
gi|659078890|ref|XP_008439960.1|4.1e-3277.17PREDICTED: polyubiquitin-B-like [Cucumis melo][more]
gi|470107386|ref|XP_004290028.1|3.7e-2560.00PREDICTED: polyubiquitin-like [Fragaria vesca subsp. vesca][more]
gi|645236530|ref|XP_008224781.1|9.2e-2454.78PREDICTED: ubiquitin-like protein-NEDD8-like protein RUB3 [Prunus mume][more]
gi|147781462|emb|CAN76119.1|1.2e-2360.22hypothetical protein VITISV_033883 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G021270.1CmoCh04G021270.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 37..106
score: 8.
IPR000626Ubiquitin domainPROFILEPS50053UBIQUITIN_2coord: 32..113
score: 9
NoneNo IPR availableGENE3DG3DSA:3.10.20.90coord: 26..108
score: 4.4
NoneNo IPR availablePANTHERPTHR10666UBIQUITINcoord: 33..111
score: 7.1
NoneNo IPR availablePANTHERPTHR10666:SF159SUBFAMILY NOT NAMEDcoord: 33..111
score: 7.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G021270CmaCh04G020020Cucurbita maxima (Rimu)cmacmoB729
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G021270Watermelon (97103) v2cmowmbB680
CmoCh04G021270Watermelon (97103) v2cmowmbB740
CmoCh04G021270Wax gourdcmowgoB0827
CmoCh04G021270Wax gourdcmowgoB0909
CmoCh04G021270Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G021270Cucurbita pepo (Zucchini)cmocpeB682
CmoCh04G021270Bottle gourd (USVL1VR-Ls)cmolsiB612
CmoCh04G021270Bottle gourd (USVL1VR-Ls)cmolsiB613
CmoCh04G021270Cucumber (Gy14) v2cgybcmoB637
CmoCh04G021270Melon (DHL92) v3.6.1cmomedB719