CmoCh04G020820 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G020820
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description30S ribosomal protein S19, chloroplastic
LocationCmo_Chr04 : 12069283 .. 12069641 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAACCCAGAAAAGTGTGGGTTGGGTAGAGCTTGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACGAGAACCCCATGGCGGTGGTGAAGGGAGGGCCCCAATTGGTCGAAAAAGAAAGAATAGTAACTTGGTCCGGACGGAGATGGGGCATACTATTTCTATTCATAAGGGCCCATTTGCCTATTTATATAACGGATCGCCTGGTAGGTCATAAATTGGTAGAATTGGCACCCATTGGGCATTTCTGGGGGCATGTGCAAAATGATAATGGATCTCGTCGGGCATAA

mRNA sequence

ATGGCTGGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAACCCAGAAAAGTGTGGGTTGGGTAGAGCTTGATCTAAATCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACGAGAACCCCATGGCGGTGGTGAAGGGAGGGCCCCAATTGGTCGAAAAAGAAAGAATAGTAACTTGGTCCGGACGGAGATGGGGCATACTATTTCTATTCATAAGGGCCCATTTGCCTATTTATATAACGGATCGCCTGGTAGGTCATAAATTGGTAGAATTGGCACCCATTGGGCATTTCTGGGGGCATGTGCAAAATGATAATGGATCTCGTCGGGCATAA

Coding sequence (CDS)

ATGGCTGGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAACCCAGAAAAGTGTGGGTTGGGTAGAGCTTGATCTAAATCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACGAGAACCCCATGGCGGTGGTGAAGGGAGGGCCCCAATTGGTCGAAAAAGAAAGAATAGTAACTTGGTCCGGACGGAGATGGGGCATACTATTTCTATTCATAAGGGCCCATTTGCCTATTTATATAACGGATCGCCTGGTAGGTCATAAATTGGTAGAATTGGCACCCATTGGGCATTTCTGGGGGCATGTGCAAAATGATAATGGATCTCGTCGGGCATAA
Homology
[Close]
BLAST of CmoCh04G020820 vs. Swiss-Prot
Match: RK2_NICDE (50S ribosomal protein L2, chloroplastic OS=Nicotiana debneyi GN=rpl2 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.2e-11
Identity = 41/60 (68.33%), Postives = 44/60 (73.33%), Query Frame = 1 

Query: 4   SATVGQVGNAGVTQKSVG------WVELDLNRPVVRGVVMNPVDENPMAVVKGGPQLVEK 58
           SATVGQVGN GV QKS+G      W+     RPVVRGVVMNPVD +PM VVKG PQLVEK
Sbjct: 187 SATVGQVGNVGVNQKSLGRAGSKRWLG---KRPVVRGVVMNPVD-HPMGVVKGEPQLVEK 242

[Close]
BLAST of CmoCh04G020820 vs. Swiss-Prot
Match: RR19_CUCSA (30S ribosomal protein S19, chloroplastic OS=Cucumis sativus GN=rps19 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.4e-10
Identity = 37/67 (55.22%), Postives = 43/67 (64.18%), Query Frame = 1 

Query: 56  EKERIVTWSGRRWGILFLFI---------RAHLPIYITDRLVGHKLVELAPIGHFWGHVQ 114
           EKE IVTWS R   I+   I         + HLP+YITDR+VGHKL E AP  +F GHV+
Sbjct: 27  EKEIIVTWS-RASTIIPTMIGHTIAVHNGKDHLPVYITDRMVGHKLGEFAPTRNFRGHVK 86

[Close]
BLAST of CmoCh04G020820 vs. Swiss-Prot
Match: RR19_SPIOL (30S ribosomal protein S19 alpha, chloroplastic OS=Spinacia oleracea GN=rps19 PE=1 SV=4)

HSP 1 Score: 65.1 bits (157), Expect = 5.7e-10
Identity = 38/67 (56.72%), Postives = 42/67 (62.69%), Query Frame = 1 

Query: 56  EKERIVTWSGRRWGILFLFI---------RAHLPIYITDRLVGHKLVELAPIGHFWGHVQ 114
           EKE IVTWS R   I+   I         R HLPIYITDR+VGHKL E AP  +F GH +
Sbjct: 27  EKEIIVTWS-RASTIIPTMIGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTLNFRGHAK 86

[Close]
BLAST of CmoCh04G020820 vs. Swiss-Prot
Match: RR19_CARPA (30S ribosomal protein S19, chloroplastic OS=Carica papaya GN=rps19 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.8e-10
Identity = 36/67 (53.73%), Postives = 42/67 (62.69%), Query Frame = 1 

Query: 56  EKERIVTWSGRRWGILFLFI---------RAHLPIYITDRLVGHKLVELAPIGHFWGHVQ 114
           EKE I+TWS R   I+   I         R HLP+YITDR+VGHKL E AP  +F GH +
Sbjct: 27  EKEIIITWS-RASTIIPTMIGHTIAIHNGREHLPVYITDRMVGHKLGEFAPTINFRGHAK 86

[Close]
BLAST of CmoCh04G020820 vs. Swiss-Prot
Match: RR19_PLAOC (30S ribosomal protein S19, chloroplastic OS=Platanus occidentalis GN=rps19 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.8e-10
Identity = 37/67 (55.22%), Postives = 42/67 (62.69%), Query Frame = 1 

Query: 56  EKERIVTWSGRRWGILFLFI---------RAHLPIYITDRLVGHKLVELAPIGHFWGHVQ 114
           EKE IVTWS R   I+   I         + HLPIYITDR+VGHKL E AP  +F GH +
Sbjct: 27  EKEIIVTWS-RASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTMNFRGHAK 86

[Close]
BLAST of CmoCh04G020820 vs. TrEMBL
Match: A0A0U1Z6Z7_9CARY (30S ribosomal protein S19, chloroplastic OS=Dianthus longicalyx GN=rps19 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.4e-09
Identity = 39/67 (58.21%), Postives = 43/67 (64.18%), Query Frame = 1 

Query: 56  EKERIVTWSGRRWGILFLFI---------RAHLPIYITDRLVGHKLVELAPIGHFWGHVQ 114
           EKE IVTWS R   I+ + I         R HLPIYITDR+VGHKL E AP  HF GH +
Sbjct: 27  EKEIIVTWS-RASTIIPIMIGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTLHFRGHAK 86

[Close]
BLAST of CmoCh04G020820 vs. TrEMBL
Match: A0A022PSX7_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016476mg PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.8e-09
Identity = 42/69 (60.87%), Postives = 45/69 (65.22%), Query Frame = 1 

Query: 4   SATVGQVGNAGVTQKSVG------WVELDLNRPVVRGVVMNPVDENPMAVVKGGPQLVEK 63
           SATVGQVGN G  QKS+G      W+     RPVVRGVVMNPVD +P  VVKG PQLVEK
Sbjct: 55  SATVGQVGNVGANQKSLGRAGSKRWLG---KRPVVRGVVMNPVD-HPHGVVKGEPQLVEK 114

Query: 64  ERIVTWSGR 67
             I    GR
Sbjct: 115 NPIYPCGGR 119

[Close]
BLAST of CmoCh04G020820 vs. TrEMBL
Match: A0A0X9SEX0_LAVAN (30S ribosomal protein S19, chloroplastic OS=Lavandula angustifolia GN=rps19 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-08
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 1 

Query: 31  VVRGVVMNP-VDENPMAVVKGGPQLVEKERIVTWSGRRWGILFLFI---------RAHLP 90
           ++R +  NP VD+N +  +    Q  EKE IVTWS R   I+   I         + HLP
Sbjct: 1   MIRSLKKNPFVDKNVLKKISKLNQKAEKEIIVTWS-RASTIIPTMIGHTIGVHNGKEHLP 60

Query: 91  IYITDRLVGHKLVELAPIGHFWGHVQNDNGSRR 114
           +YITDR+VGHKL E  P  +F GH ++DN SRR
Sbjct: 61  VYITDRMVGHKLGEFVPTLNFRGHAKSDNRSRR 92

[Close]
BLAST of CmoCh04G020820 vs. TrEMBL
Match: A0A0S2IF65_9ROSI (Ribosomal protein S19 OS=Cucurbita lundelliana GN=rps19 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-08
Identity = 39/67 (58.21%), Postives = 43/67 (64.18%), Query Frame = 1 

Query: 56  EKERIVTWSGRRWGILFLFI---------RAHLPIYITDRLVGHKLVELAPIGHFWGHVQ 114
           EKE IVTWS R   I+   I         R HLPIYITDR+VGHKL E AP  +F GHV+
Sbjct: 27  EKEIIVTWS-RASTIIPTMIGHTIAIHNGRDHLPIYITDRMVGHKLGEFAPTRNFRGHVK 86

[Close]
BLAST of CmoCh04G020820 vs. TrEMBL
Match: A0A0S2IGW4_CUCPE (Ribosomal protein S19 OS=Cucurbita pepo var. texana GN=rps19 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-08
Identity = 39/67 (58.21%), Postives = 43/67 (64.18%), Query Frame = 1 

Query: 56  EKERIVTWSGRRWGILFLFI---------RAHLPIYITDRLVGHKLVELAPIGHFWGHVQ 114
           EKE IVTWS R   I+   I         R HLPIYITDR+VGHKL E AP  +F GHV+
Sbjct: 27  EKEIIVTWS-RASTIIPTMIGHTVAIHNGRDHLPIYITDRMVGHKLGEFAPTRNFRGHVK 86

[Close]
BLAST of CmoCh04G020820 vs. TAIR10
Match: ATCG00820.1 (ATCG00820.1 ribosomal protein S19)

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-09
Identity = 38/93 (40.86%), Postives = 51/93 (54.84%), Query Frame = 1 

Query: 31  VVRGVVMNP-VDENPMAVVKGGPQLVEKERIVTWSGRRWGILFLFI---------RAHLP 90
           V R +  NP V ++ +  ++      EKE I+TWS R   I+   I         R HLP
Sbjct: 1   VTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWS-RASTIIPTMIGHTIAIHNGREHLP 60

Query: 91  IYITDRLVGHKLVELAPIGHFWGHVQNDNGSRR 114
           +YI D +VGHKL E +P  +F GH +NDN SRR
Sbjct: 61  VYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92

[Close]
BLAST of CmoCh04G020820 vs. TAIR10
Match: ATCG00830.1 (ATCG00830.1 ribosomal protein L2)

HSP 1 Score: 53.9 bits (128), Expect = 7.5e-08
Identity = 36/74 (48.65%), Postives = 43/74 (58.11%), Query Frame = 1 

Query: 4   SATVGQVGNAGVTQKSVG------WVELDLNRPVVRGVVMNPVDENPMAVVKGGPQLVEK 63
           SATVGQVGN GV QKS+G      W+     RPVVRGVVMNPVD +P    +G   +  K
Sbjct: 187 SATVGQVGNVGVNQKSLGRAGSKCWLG---KRPVVRGVVMNPVD-HPHGGGEGRAPIGRK 246

Query: 64  ERIVTWS----GRR 68
           + +  W     GRR
Sbjct: 247 KPVTPWGYPALGRR 256

[Close]
BLAST of CmoCh04G020820 vs. TAIR10
Match: ATCG01310.1 (ATCG01310.1 ribosomal protein L2)

HSP 1 Score: 53.9 bits (128), Expect = 7.5e-08
Identity = 36/74 (48.65%), Postives = 43/74 (58.11%), Query Frame = 1 

Query: 4   SATVGQVGNAGVTQKSVG------WVELDLNRPVVRGVVMNPVDENPMAVVKGGPQLVEK 63
           SATVGQVGN GV QKS+G      W+     RPVVRGVVMNPVD +P    +G   +  K
Sbjct: 187 SATVGQVGNVGVNQKSLGRAGSKCWLG---KRPVVRGVVMNPVD-HPHGGGEGRAPIGRK 246

Query: 64  ERIVTWS----GRR 68
           + +  W     GRR
Sbjct: 247 KPVTPWGYPALGRR 256

[Close]
BLAST of CmoCh04G020820 vs. NCBI nr
Match: gi|761631499|gb|AJP62152.1| (ribosomal protein S19 (chloroplast) [Dianthus longicalyx])

HSP 1 Score: 68.9 bits (167), Expect = 6.4e-09
Identity = 39/67 (58.21%), Postives = 43/67 (64.18%), Query Frame = 1 

Query: 56  EKERIVTWSGRRWGILFLFI---------RAHLPIYITDRLVGHKLVELAPIGHFWGHVQ 114
           EKE IVTWS R   I+ + I         R HLPIYITDR+VGHKL E AP  HF GH +
Sbjct: 27  EKEIIVTWS-RASTIIPIMIGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTLHFRGHAK 86

[Close]
BLAST of CmoCh04G020820 vs. NCBI nr
Match: gi|132861|sp|P21434.1|RK2_NICDE (RecName: Full=50S ribosomal protein L2, chloroplastic)

HSP 1 Score: 68.6 bits (166), Expect = 8.3e-09
Identity = 41/60 (68.33%), Postives = 44/60 (73.33%), Query Frame = 1 

Query: 4   SATVGQVGNAGVTQKSVG------WVELDLNRPVVRGVVMNPVDENPMAVVKGGPQLVEK 58
           SATVGQVGN GV QKS+G      W+     RPVVRGVVMNPVD +PM VVKG PQLVEK
Sbjct: 187 SATVGQVGNVGVNQKSLGRAGSKRWLG---KRPVVRGVVMNPVD-HPMGVVKGEPQLVEK 242

[Close]
BLAST of CmoCh04G020820 vs. NCBI nr
Match: gi|604298921|gb|EYU18891.1| (hypothetical protein MIMGU_mgv1a016476mg [Erythranthe guttata])

HSP 1 Score: 68.6 bits (166), Expect = 8.3e-09
Identity = 42/69 (60.87%), Postives = 45/69 (65.22%), Query Frame = 1 

Query: 4   SATVGQVGNAGVTQKSVG------WVELDLNRPVVRGVVMNPVDENPMAVVKGGPQLVEK 63
           SATVGQVGN G  QKS+G      W+     RPVVRGVVMNPVD +P  VVKG PQLVEK
Sbjct: 55  SATVGQVGNVGANQKSLGRAGSKRWLG---KRPVVRGVVMNPVD-HPHGVVKGEPQLVEK 114

Query: 64  ERIVTWSGR 67
             I    GR
Sbjct: 115 NPIYPCGGR 119

[Close]
BLAST of CmoCh04G020820 vs. NCBI nr
Match: gi|1002161973|ref|YP_009232083.1| (ribosomal protein S19 (chloroplast) [Lavandula angustifolia])

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-08
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 1 

Query: 31  VVRGVVMNP-VDENPMAVVKGGPQLVEKERIVTWSGRRWGILFLFI---------RAHLP 90
           ++R +  NP VD+N +  +    Q  EKE IVTWS R   I+   I         + HLP
Sbjct: 1   MIRSLKKNPFVDKNVLKKISKLNQKAEKEIIVTWS-RASTIIPTMIGHTIGVHNGKEHLP 60

Query: 91  IYITDRLVGHKLVELAPIGHFWGHVQNDNGSRR 114
           +YITDR+VGHKL E  P  +F GH ++DN SRR
Sbjct: 61  VYITDRMVGHKLGEFVPTLNFRGHAKSDNRSRR 92

[Close]
BLAST of CmoCh04G020820 vs. NCBI nr
Match: gi|952954358|gb|ALO21722.1| (ribosomal protein S19 (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-08
Identity = 39/67 (58.21%), Postives = 43/67 (64.18%), Query Frame = 1 

Query: 56  EKERIVTWSGRRWGILFLFI---------RAHLPIYITDRLVGHKLVELAPIGHFWGHVQ 114
           EKE IVTWS R   I+   I         R HLPIYITDR+VGHKL E AP  +F GHV+
Sbjct: 27  EKEIIVTWS-RASTIIPTMIGHTIAIHNGRDHLPIYITDRMVGHKLGEFAPTRNFRGHVK 86

The following BLAST results are available for this feature:
BLAST of CmoCh04G020820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RK2_NICDE5.2e-1168.3350S ribosomal protein L2, chloroplastic OS=Nicotiana debneyi GN=rpl2 PE=3 SV=1[more]
RR19_CUCSA4.4e-1055.2230S ribosomal protein S19, chloroplastic OS=Cucumis sativus GN=rps19 PE=3 SV=1[more]
RR19_SPIOL5.7e-1056.7230S ribosomal protein S19 alpha, chloroplastic OS=Spinacia oleracea GN=rps19 PE=... [more]
RR19_CARPA9.8e-1053.7330S ribosomal protein S19, chloroplastic OS=Carica papaya GN=rps19 PE=3 SV=1[more]
RR19_PLAOC9.8e-1055.2230S ribosomal protein S19, chloroplastic OS=Platanus occidentalis GN=rps19 PE=3 ... [more]
BLAST of CmoCh04G020820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0U1Z6Z7_9CARY4.4e-0958.2130S ribosomal protein S19, chloroplastic OS=Dianthus longicalyx GN=rps19 PE=3 SV... [more]
A0A022PSX7_ERYGU5.8e-0960.87Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016476mg PE=4 SV=1[more]
A0A0X9SEX0_LAVAN1.3e-0844.0930S ribosomal protein S19, chloroplastic OS=Lavandula angustifolia GN=rps19 PE=3... [more]
A0A0S2IF65_9ROSI1.7e-0858.21Ribosomal protein S19 OS=Cucurbita lundelliana GN=rps19 PE=3 SV=1[more]
A0A0S2IGW4_CUCPE1.7e-0858.21Ribosomal protein S19 OS=Cucurbita pepo var. texana GN=rps19 PE=3 SV=1[more]
BLAST of CmoCh04G020820 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00820.14.0e-0940.86ATCG00820.1 ribosomal protein S19[more]
ATCG00830.17.5e-0848.65ATCG00830.1 ribosomal protein L2[more]
ATCG01310.17.5e-0848.65ATCG01310.1 ribosomal protein L2[more]
BLAST of CmoCh04G020820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|761631499|gb|AJP62152.1|6.4e-0958.21ribosomal protein S19 (chloroplast) [Dianthus longicalyx][more]
gi|132861|sp|P21434.1|RK2_NICDE8.3e-0968.33RecName: Full=50S ribosomal protein L2, chloroplastic[more]
gi|604298921|gb|EYU18891.1|8.3e-0960.87hypothetical protein MIMGU_mgv1a016476mg [Erythranthe guttata][more]
gi|1002161973|ref|YP_009232083.1|1.8e-0844.09ribosomal protein S19 (chloroplast) [Lavandula angustifolia][more]
gi|952954358|gb|ALO21722.1|2.4e-0858.21ribosomal protein S19 (plastid) [Cucurbita argyrosperma][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like_sf
IPR014726Ribosomal_L2_dom3
IPR022669Ribosomal_L2_C
IPR022671Ribosomal_L2_CS
IPR023575Ribosomal_S19_SF
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009536 plastid
cellular_component GO:0044391 ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G020820.1CmoCh04G020820.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008991Translation protein SH3-like domainunknownSSF50104Translation proteins SH3-like domaincoord: 4..42
score: 5.4
IPR014726Ribosomal protein L2, domain 3GENE3DG3DSA:4.10.950.10coord: 27..42
score: 5.
IPR022669Ribosomal protein L2, C-terminalPFAMPF03947Ribosomal_L2_Ccoord: 4..42
score: 5.
IPR022671Ribosomal protein L2, conserved sitePROSITEPS00467RIBOSOMAL_L2coord: 30..41
scor
IPR023575Ribosomal protein S19, superfamilyGENE3DG3DSA:3.30.860.10coord: 77..113
score: 2.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G020820Cucurbita maxima (Rimu)cmacmoB741
CmoCh04G020820Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G020820Cucurbita pepo (Zucchini)cmocpeB680
CmoCh04G020820Cucurbita pepo (Zucchini)cmocpeB682