CmoCh04G020770 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G020770
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionATP synthase subunit c, sodium ion specific
LocationCmo_Chr04 : 11890608 .. 11890853 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCCACTGATGTTTGCCGCTTCCGTTATTGCTGCTGGATTGGCCGTCGGGCTTGCTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTGCGGGCCAAGCTGTAGAAGGGATCGCGAGACAACCCGAGGCGGAGGGAAAAATCCGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAACAATTTATGGACTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTTTGTTTAA

mRNA sequence

ATGAATCCACTGATGTTTGCCGCTTCCGTTATTGCTGCTGGATTGGCCGTCGGGCTTGCTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTGCGGGCCAAGCTGTAGAAGGGATCGCGAGACAACCCGAGGCGGAGGGAAAAATCCGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAACAATTTATGGACTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTTTGTTTAA

Coding sequence (CDS)

ATGAATCCACTGATGTTTGCCGCTTCCGTTATTGCTGCTGGATTGGCCGTCGGGCTTGCTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTGCGGGCCAAGCTGTAGAAGGGATCGCGAGACAACCCGAGGCGGAGGGAAAAATCCGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAACAATTTATGGACTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTTTGTTTAA
BLAST of CmoCh04G020770 vs. Swiss-Prot
Match: ATPH_ATRBE (ATP synthase subunit c, chloroplastic OS=Atropa belladonna GN=atpH PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.4e-33
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 1

Query: 1  MNPLMFAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPL+FAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLVFAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020770 vs. Swiss-Prot
Match: ATPH_ANTFO (ATP synthase subunit c, chloroplastic OS=Anthoceros formosae GN=atpH PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.9e-32
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1

Query: 1  MNPLMFAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPL+ AASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020770 vs. Swiss-Prot
Match: ATPH_LOBMA (ATP synthase subunit c, chloroplastic OS=Lobularia maritima GN=atpH PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.9e-32
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1

Query: 1  MNPLMFAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPL+ AASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020770 vs. Swiss-Prot
Match: ATPH_POPTR (ATP synthase subunit c, chloroplastic OS=Populus trichocarpa GN=atpH PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.9e-32
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1

Query: 1  MNPLMFAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPL+ AASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020770 vs. Swiss-Prot
Match: ATPH_ARAHI (ATP synthase subunit c, chloroplastic OS=Arabis hirsuta GN=atpH PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.9e-32
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1

Query: 1  MNPLMFAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPL+ AASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020770 vs. TrEMBL
Match: A0A159BI78_9POAL (ATP synthase CF0 subunit III OS=Urochloa decumbens GN=atpH PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.2e-30
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1

Query: 1  MNPLMFAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPL+ AASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020770 vs. TrEMBL
Match: A0A0A8K7Z0_ANACO (ATP synthase subunit c, chloroplastic OS=Ananas comosus GN=atpH PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.2e-30
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1

Query: 1  MNPLMFAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPL+ AASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020770 vs. TrEMBL
Match: A0A0K0M136_HELPE (ATP synthase CF0 C subunit OS=Helianthus petiolaris GN=atpH PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.2e-30
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1

Query: 1  MNPLMFAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPL+ AASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020770 vs. TrEMBL
Match: A0A142DQA9_9LAMI (ATP synthase subunit c, chloroplastic OS=Stenogyne kanehoana GN=atpH PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.2e-30
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1

Query: 1  MNPLMFAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPL+ AASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020770 vs. TrEMBL
Match: T1QQW9_ANGCO (ATP synthase subunit c, chloroplastic OS=Angophora costata GN=atpH PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.2e-30
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1

Query: 1  MNPLMFAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPL+ AASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020770 vs. TAIR10
Match: ATCG00140.1 (ATCG00140.1 ATP synthase subunit C family protein)

HSP 1 Score: 138.7 bits (348), Expect = 1.6e-33
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1

Query: 1  MNPLMFAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPL+ AASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020770 vs. NCBI nr
Match: gi|28261704|ref|NP_783219.1| (ATP synthase CF0 C subunit [Atropa belladonna])

HSP 1 Score: 141.7 bits (356), Expect = 5.5e-31
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 1

Query: 1  MNPLMFAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPL+FAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLVFAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020770 vs. NCBI nr
Match: gi|927371887|ref|YP_009164185.1| (ATP synthase CF0 subunit III (chloroplast) [Viscum minimum])

HSP 1 Score: 138.7 bits (348), Expect = 4.6e-30
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1

Query: 1  MNPLMFAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPL+ AASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020770 vs. NCBI nr
Match: gi|757609166|ref|WP_042854983.1| (ATP F0F1 synthase subunit C [Staphylococcus aureus])

HSP 1 Score: 138.7 bits (348), Expect = 4.6e-30
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1

Query: 1  MNPLMFAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPL+ AASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020770 vs. NCBI nr
Match: gi|7525020|ref|NP_051046.1| (ATP synthase CF0 C subunit [Arabidopsis thaliana])

HSP 1 Score: 138.7 bits (348), Expect = 4.6e-30
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1

Query: 1  MNPLMFAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPL+ AASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020770 vs. NCBI nr
Match: gi|953244968|ref|YP_009180095.1| (ATP synthase CF0 subunit III (chloroplast) [Polygonatum cyrtonema])

HSP 1 Score: 138.7 bits (348), Expect = 4.6e-30
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1

Query: 1  MNPLMFAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPL+ AASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 2  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 61

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 62 EALTIYGLVVALALLFANPFV 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ATPH_ATRBE3.4e-3398.77ATP synthase subunit c, chloroplastic OS=Atropa belladonna GN=atpH PE=3 SV=1[more]
ATPH_ANTFO2.9e-3297.53ATP synthase subunit c, chloroplastic OS=Anthoceros formosae GN=atpH PE=2 SV=1[more]
ATPH_LOBMA2.9e-3297.53ATP synthase subunit c, chloroplastic OS=Lobularia maritima GN=atpH PE=3 SV=1[more]
ATPH_POPTR2.9e-3297.53ATP synthase subunit c, chloroplastic OS=Populus trichocarpa GN=atpH PE=3 SV=1[more]
ATPH_ARAHI2.9e-3297.53ATP synthase subunit c, chloroplastic OS=Arabis hirsuta GN=atpH PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A159BI78_9POAL3.2e-3097.53ATP synthase CF0 subunit III OS=Urochloa decumbens GN=atpH PE=4 SV=1[more]
A0A0A8K7Z0_ANACO3.2e-3097.53ATP synthase subunit c, chloroplastic OS=Ananas comosus GN=atpH PE=3 SV=1[more]
A0A0K0M136_HELPE3.2e-3097.53ATP synthase CF0 C subunit OS=Helianthus petiolaris GN=atpH PE=3 SV=1[more]
A0A142DQA9_9LAMI3.2e-3097.53ATP synthase subunit c, chloroplastic OS=Stenogyne kanehoana GN=atpH PE=3 SV=1[more]
T1QQW9_ANGCO3.2e-3097.53ATP synthase subunit c, chloroplastic OS=Angophora costata GN=atpH PE=3 SV=1[more]
Match NameE-valueIdentityDescription
ATCG00140.11.6e-3397.53ATCG00140.1 ATP synthase subunit C family protein[more]
Match NameE-valueIdentityDescription
gi|28261704|ref|NP_783219.1|5.5e-3198.77ATP synthase CF0 C subunit [Atropa belladonna][more]
gi|927371887|ref|YP_009164185.1|4.6e-3097.53ATP synthase CF0 subunit III (chloroplast) [Viscum minimum][more]
gi|757609166|ref|WP_042854983.1|4.6e-3097.53ATP F0F1 synthase subunit C [Staphylococcus aureus][more]
gi|7525020|ref|NP_051046.1|4.6e-3097.53ATP synthase CF0 C subunit [Arabidopsis thaliana][more]
gi|953244968|ref|YP_009180095.1|4.6e-3097.53ATP synthase CF0 subunit III (chloroplast) [Polygonatum cyrtonema][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000454ATP_synth_F0_csu
IPR002379ATPase_proteolipid_c-like_dom
IPR005953ATP_synth_csu_bac/chlpt
IPR020537ATP_synth_F0_csu_DDCD_BS
Vocabulary: Cellular Component
TermDefinition
GO:0045263proton-transporting ATP synthase complex, coupling factor F(o)
GO:0033177proton-transporting two-sector ATPase complex, proton-transporting domain
Vocabulary: Molecular Function
TermDefinition
GO:0015078hydrogen ion transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0015986ATP synthesis coupled proton transport
GO:0015991ATP hydrolysis coupled proton transport
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0042170 plastid membrane
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain
molecular_function GO:0015078 hydrogen ion transmembrane transporter activity
molecular_function GO:0008289 lipid binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G020770.1CmoCh04G020770.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000454ATPase, F0 complex, subunit CPRINTSPR00124ATPASECcoord: 33..48
score: 1.6E-23coord: 50..75
score: 1.6E-23coord: 12..31
score: 1.6
IPR000454ATPase, F0 complex, subunit CGENE3DG3DSA:1.20.20.10coord: 3..78
score: 8.0
IPR002379V-ATPase proteolipid subunit C-like domainPFAMPF00137ATP-synt_Ccoord: 11..73
score: 4.7
IPR002379V-ATPase proteolipid subunit C-like domainunknownSSF81333F1F0 ATP synthase subunit Ccoord: 3..79
score: 2.48
IPR005953ATPase, F0 complex, subunit C, bacterial/chloroplastTIGRFAMsTIGR01260TIGR01260coord: 20..77
score: 1.2
IPR020537ATPase, F0 complex, subunit C, DCCD-binding sitePROSITEPS00605ATPASE_Ccoord: 40..61
scor
NoneNo IPR availableHAMAPMF_01396ATP_synth_c_bactcoord: 9..77
score: 18
NoneNo IPR availablePANTHERPTHR10031ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIALcoord: 1..78
score: 1.5
NoneNo IPR availablePANTHERPTHR10031:SF6ATP SYNTHASE SUBUNIT C, CHLOROPLASTICcoord: 1..78
score: 1.5

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None