CmoCh04G020660 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G020660
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRetrotransposon protein, putative, Ty1-copia subclass
LocationCmo_Chr04 : 11773465 .. 11782126 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTTGTTGCCATCTACCAAGTAGTCCTGGAGGATGTTCTTCTCATGTTGGTAGAGAAAGACTCGAAAAAGGCAGCGTGGGAGGCGTTGCAAACAATGCATGTGGGTGTGGAACGTGTTAAAGAAGAAAATGTGTAGACCTTGAAGAGTGAGTTCGAGGCTATCTGCATGAAGGATGGTGAATCAAACCCTAAACCCTAAACCCTAGATGACTTTGTCATAAAGTTGACGATGATCATCAGTGGCATCCATTCATTAGGCGACATGATGGAGGAGATCTCCATCGTCAAGAAGTTCCTTCAAGTTCCCTCAAAATTCATGCAAATTGTTACCTTCATTGAACAGTTCATCAACCTCAAGAACATGTCAGTTGAGGAGATCGTTGGTCATCTTAAGGTCCATGAGGAGAGACTTCGTGGCTATAAAGACAAAGAGGAGAAGAAACACCTCTTATTCACACATGAGGAGTGGCTCGCACGGACGAAAAGGAATGATGCGGCTGACTCTTCTTTTCCAAGTACGAGGGGATGTGGCAGCCATAACAAGGAAAACAAAGGTCATGGACATGGTCGTAGATGTGGTGGTAGAGGAGGCCGTGAAATTCTTGAGGTGCACTAGTTTATGCGAATGAGAGAATACACATATTGAGGCCAAGATGACCACAAATGGGGTGAGGTGCCCGTTGAAAGTGGAATTGTTTGGCGAGTGTCTGTAGAGAGAGTCTGCCTCACCCACAGCTATGACAAACACTGAATAGCCGCGTCTACGTTACAAGTCTCAATAGTCGAGTCTAAGATGAGCGAACAACAAAAATAGGTCTGAAAGTAGGATAGCCCGTAGATAGTGTGCAAGAGTTTTATATTCATCTAAAGCACGTTTGTTTTCCAGCAAGTCAAGTAACAAGTCGTCTAGACTCCGCTCCCACAATAGTTGGTGCCACAAAGAGGAATACCATGGTTGGATTGCAAGTCACACCCCGCAAGGTGTACCATTAGGTGTTAGTAAGATAAGCATTATGAAAAATGATAAGTCAGGTGCTTAGTAAGTTCTTACTTGTCTGAAGCACAACCAAATTCAGCTGGTCGAGTCAACAACAATCCAAGAGTTTGGATTGTCATCGGGATAATGTCGAGATTGAGTGGGGGAGAATGTCACATTCTGAGATGTGATTAGGCTCTAAGAAAGTCAGCAAGGACGATGACTAATTTAGGTGGGGGAGAATGTCACAATCCACGATGCGATTGTGCCCTGAGAAAGTCATCGAGGACGATGACTAACTTAAATGGGGGAGAATGTCACAACCATACTATGAAGAGAGTAGATTGTGACTCTCACGTTGCGACAAGAGATGCGGCAACCCTCAAGTGGCGCCCATTCGGTCCCACGAGGGTCTAGACGAGTGCCATGATGCGACCAAGGAGGATGGTGCATCATCTAACACACCACATTGAATGGCATTGAAGACAAGTTGAGGCATAAGCAAGATAGAGACATCGAATAGACAAGAGTGGCAAAGATAGGCTTGTTGAAGGGTCTGGTAGGGTCTCGGGCTTTAACCTCGAAATTCGGAGTTCTAGAAGGAATTTGGACATGCCGCTTTGGAGCTAAGTTTGTCCATATGAAATATGAATGCTTGCCAAATTTGGTGTCAATCGGACACCGAACGGACGTTCCATGACACCGTATGACCGTTCGCCAAAATCACGCTATGCGTGGAGTATTGAAAATGACTCAAAATGTACTATAGGGGGAGGCATGGTGTCAGCTCTCCACCAACCCTGGGTCCTGTGGCCTAAGCGAGCTACCCTGTGGCATATACATGTGTCACAATGAGGATGAGCATGCTAAGATGAGTGTCTTGAACGACTTTCTTTGAAATATGGTTTTCAAGGACAATATCGGGCGATACAGGTGTGCCGGTATTGCATCTTTGCCCGCGTGTCGGAGGTTGATATATGCACCCGCTATCTAGTACGGTATCCATAAATGACATGACATGAGCACAAGAGGACCAATGCTTCAATAGAACCCAGATGGATGGATGTTTGGGATGTCCTAATGAGATGAGCGCACGTGGGCTCGTTCTCGATGGCATGACTGAGTAACTTGCGATGGTCGACGACACCCCGAGACTTGGGATAATGTCAAGACATATGAGCCATGTCGATTAGAAACAAAAATGACAAGATGAGATGTGATGTTGCATTGAGAGACCTTGGCCCTGAGTAGAGGCAAGATTAAGCCAAATGACTTGGCCTAGTATAGAGGTAAGTCGGTTGTGTCGCAAACGATTGAACATGCACGCGCAGGAGGCATGTGTGGTCGAACAAGCTTGAATTCCGCACAAGCAATGTTTGGTTGGCGAAAACAAACCTCGCCTAAGGTCCGATGAAACCACGAAGCCAGAGCAAAAAATATATATAGGGCTTGATTCCACATAAGGTTGGTCTTGATCGTGTCAAGATCTCAATGCCGCACAATAAAAAAAGTAGGACTGTGACGCTCCCTTCAAAAACCTGAGTTCCTTCCTCCTTCCTCAACCACCAAGTCGCCTTAAATCAACCCTCACCCAATACGTCCTCGCCTAGTCTCGATGAGGGAAAAGACTGAGGTCATTCGCTGCCTGCCCTCTGTACGTGTCGCTAACGAGTGTACAACGTTGCAATTGCGTCTGTCATTCTTTTTTTAATTATTATTTATTTATTCCTCCTTTGGACCGCATTACTGTTGTCCTTCTCGCTAACGCATAGGGTACGGTGCTGCAAAAAAACACATTTGATAAGATAAGGAATCAATACAAGGGGAATAAGATTCAGATTACCTTGTCGATCGAATATCTCAAGGCAAAAATATTGTTTGAGATTCGAATCACTCCACAAGCAAAATCGATCATGTCTAGCTTGAATGATTCTTGTTAATCAAATATCTCAAGGCAATAACACTTGATTGAGATTCGAATCACTCTACAAGCAAGATTGATCACGTTAAGCTTGAATGATTCTACATGCAACCTAAACTACATAGAATTGCAAAGAAACTTAGCCATTGGCTAAAGAAGAGCACAAATGCTTCTTTTACTATATTTTCCAAATCTCCTTACAAATATAATATACATGGTTTTATATAGCCTCAAAATGAAACTATTGAAGGCATTCCGTAACATTCATACTTAATAACCATAATTAGTCATTATGTAAATGTAACCTATAAAGTAAATAAAATGTCTCAAAATACAATAACTCTAAATTACTCTAAATTGTAACCTACCCAAAATTTACAACAATCAAACTTTATTCTTTTTCAATGTAGCATGAATTGAAACATCATTGAAGTATATTGTATGATTAATGTCTCTTGGTTTATATCAACATTTTTCTCCTTTTTTTTTCTAAATATATATTATATAATAATTTTCATTTATTTCTCCTCTATCCACGGGGTATTACACAAACAAATTGTAAGGCTTGCAGTATTGGAATTTATTAACGCTTCTGTGAAAAAGAAACGGTGATTTTGTCCAAGACATTTTTTTTTATATGGTAATTGAGAATATGAGAGGGTAGATGAGATCGTGTGAGTCTAAATATAGGGAAAGAGGGGCAAAAATGAGTAATCCCTTAACTCGGATGATGTAATAGAGAAGATCATATGAGTTGAGAGAAATAGAGGAGATCATGTGATTAAATGACTCGATGCAATGTACTGCAATAATTGTTTGAAATCTTATAAATAATAAAAATGATGCTCAAATTTCTAAACTAAAAATCTCAACTCCATAGCTCAAATTTATTCATTTATAATCTGATTTTTACCTGCCAATTTTATGGTTATTTATAACGATTCCACAAAAGAAAACTTCAATCCTTCAAATACCTACTAAAAAGAAGTTACGATCATAATTAACTAACTTACCGGTATCCTTCAATTTCCCACTACGACAAGTTACGGTCGTGACAAGTAACTCCCCACTACCCTTCATGTCCACCCAAAAAAAAAAAAAAAACAATTGTGGCCATAATTGGCAACTTCGGCAACTCCTCAATTTCCTTTAAAAGCCTCCTACCATAAGTTATGAAATTATAACAATAAATTTCAAAAAGAAAAATATCAATCAGAGTGCTATTTATGGAACTTCATACTCTACTTCAACCTTGCATTGACTTCCAAAGCTTCACATAATTCTTCCTTCCGAGAGTTAGCTTGTAACACATAAAATAGAAGTTGAATCAAGTCTAGTAGATGAAGAATGAATGCTTTTTTAGCCTTGACTTGTGTAATAGGTCTAGTTAAAACTTGTGGAACACCATGATCCCTATCATATGTGAATAGAGGTATCCTATATAATTAGTTTGTATAAGAGTAGACCTGAAATATTTAATACTTCTTTATAGATCCATTAATTGAGCGCACTAATAATTCACAAGATGATTATATGCGACTCAATCTTAATCTTGAAAAAGTTATGAACTTTTGCACATGAACCCTTGTTCTTTGATTTGTATGGGTGAGCATAATTTTTATAGCTAATTAAATATGTCCACAATTCTGGAGACTTGACCAAATAGAAATCTGCGAACATAATCTTACAAGATGGAGTTCATTCTTTCCTATATAGGAAAAATAGATGAGTAATTCCTATCGGAACTAATTTTGGGACTTGAATAATGAAACCTCACCTTCTCATGGTTTAAGAGTGACTTAGTTTATGATTTTTTTCATAAACAAATGGTTTATTAGAGAATTAGTGATACTTTAGGGGATATATGTATTACATGGATAAAACAGACTTTTGACCTAGTTGTAATTACGAATAACTCGTGAATGATTGATTTGCTTGTAATGATTATATCAATGACACAACTTGTCCTAAGAACATAAGAGTGCAACTTAGATCTATAGTAGAGTGATATAGTTAATGAATGAAAATTAATTAATATAAAATTTTGTATTATTAGAGCTTATAATCTAATAGGTCTATAAGGTCAAATTGTGAGCTCATAGTAAAACTAAAATGATTAATTTAATCGAAATAAAATTTTTAAATATTCAAAATCATAGTAATTTGATATTAAAATAGTTAATGTATATTAGGCACATTAAACAAATATATATATATATATATATATATTTGAAATTTGAAATATCTTATGATATTTAAATATAATTTAAATAGAATATCATATATTAAATATTAAAATATATTATTTGTTAAATATTCTCCCAAAAACCAAAAATGCATCCAACACTTTCTCCAATCTAGAGAATGGAGGATTTTCTCTCGAGCTCTTCTCTCTAATCCTGGGAGATAAGTCAATTTAATGCTTCTAATGAGTGAATGAAACGTCCCTTCCTATTATGAATTTAAACCCTAAAATCTTGTAATAATTTTTTTTTTTTAATAATAGTTTTAATTATTTTAATTGTAATCCAATATTATCTATCGTATGAAAAATTCAAAAAAGGTATATGGTCAGTTATCGAGGAAGCTCATGCTCAAGAAATGACTTAAAGGATCCATAGTATGTAATTTTTACCAACTATTTGATTCAAATTTGTCATGTGAAGACATGTGAGTTGACCTATTTTATACCCTGCATTTATATAAGACTAGATCATAAAATATTTAATATCTATTTATAAAGCTGTTAATTAAGAAGATCAATATTTTATAGGAGGATTATATAGGACTAGATCTTAAGCCTAAGTGAGCTATAAACCTCTATATAGGAGGGCTTGTCCATTGATTTGCATGAGTAAGAATGACTTTTGTAGCATATTTAACATGTCTGTCATTTAGAAAACTTAACCAAATAGAAAGCTAATAACATAATCAAACAAGATATAATTTACTCATCATAAAGAGTGAGTAGATGAGTAATTGTGTGTAAATGTTGATTTCTAAACATAAACAAATGATTTAATTCAAATGACTTGTGTTTATTCTTTTATTCTAAATTCGTTAGTTAAGAATATTAATATTTTGAAGAATAATCATATGTTATTGGATCTTAATCTAATTTTTATAGGTAAGGGTTTGTCCTTTAATTTGCATGAACAAAAATGATTTTTTTTTAGCGATTTAATATGTCTACCATTTTGAAAATTTGACCAAGCAAGAAGTTTAGGACATAATCTTACGAAAAGAAGTTCTTTGTCGAACATAAAAAGAATAAAAAAAAAAATAGATATACAAATCTACACTTATAACTTTATCCTCATAACACTAAAAAAAATATCTCTCAGAAGAAAAACGAAAAGAAAGAAAATTAAAAGCTTCTGAGTGACATCTTTTTGAAATTGAAGGATTTAAAATTATAAGAATAATAGTTAAAAAAAGATTAAAAATATTAATAAACTAATTTTGATTTTTTTTTTTAAATTCAAGATGGATCAAATGATCTTTCTTTAATTTTAAAATTTTAAAATTATAATATATTATATATATAATTAATTGACAAAAAGTTCCTTTAACTTTATTTTGGCCCTATTTTCTTTATTTTAACCTTGATTACTAAAAATATTAAAATTATTAGTCAGATGAATTTTAATAAATTAATTTAAAATTAAGAGTCAAAAATTCAAAACAAACTTTTTTAATAACGACAAACTGAAGTTTTTTTTTTTTTTTTTAACCTAAAATAAAGTAATATATATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTAACCTAAAATAAAGTAATATATATGTCCAAGTAATAATATAATATATACTAATATTTCAGTTCATACTTTAAATTTATTCAAAAATTAATTCTCTCCTAAATTAATGCATCAATAAATTATCAATAAATTTCAAATGACAACACAGTAACAAAATAACTAATAATTCGTGAAAATATTTTCTTAATTTTCTCCCCATTTCAAATGGTCAATAAGAACCATTAAAAAAATATTTTCTTTATTAAGGGATTAATTATAACATTCCATGAGACAGAATGATATTAAATTTTAACAAATCCGGTGGTTTTTGAAAATTTTCCAAATTTTAAAAAATATATGGATTAAATCATAGGTTAGACCAAATCAATTGAACTAACGTGGAAATATAATGACCATATGAAATTAATTTCAAATTATATAGACGAAGTTGGTAATAAATAAGCTTAAAAATGATATGTCTGGCGTTGAATAAACTCAAAAATAAAATTTTAATATTTTTCTTACTATTAAATGGGTAAAAATAGAATTTTGGTGATGTAAAATCTAACTATTTAATTAATTGATATATTTATTTAATTTTAAAAAATATCCCAGTTTCTTCGTTCTCGCGCCCAATATCTCCTCAAAAAAGTAGCCTTCTTTTCGTTCTCCCGCTCATCTTCCCAAACCTTCTCTCTCAAATCTCATTTTATTTACCACTTTTATTTTCAACACTCATTTCAGTTCAGCAGTAGGGTTTGTTTGCTCTGCTTTGCCCATACGCATTTCTGGGGAGGTCGATAGCAGCAGCAGCAGTGCCCCTGGAACATCACATCAAACCGCTCATTCTACATAAACCATCCAAATCACAAGGTAAGCTTCTTATCAAAACTATGGGGTTACTACAAATTTGTTTCTCCCAGCGTTTTTGTTTTTGTTTGGTTAACTTTTTTTTTAAAAAATTAAGTTTCAACCTCCAATTCCATCAGGTTTTTATCACTTTACCAATTACCGAGTTTTGTCTATGAAAAAAAGTCCTAAAAATTGCTCAAATCTTAGTTTATGTGAACGTTCTTTTCTTGTTGTTCAAGTGATGATTGAGTTTGGATTATTAAACTTGCTAAAATACATTTTTCATTGCAATTATCATTTTGTCTAAATAATGGTTCCACGAAGAAAGAAGCTAAGAAGGAAAATAATGGACCAACAACTAGTCCTAAACTCAAAAGGTTTTATGGAGGACAATATGCCTAAATTATATCGACTTGGAATAAAAAAATGAATTGAGGGGGATTTGAAATGCTGTAACAGAGAAGTGAATTGACTGTGTGCTAACTTTGGTTTCAATTGGTCTGTATTGTCCGGCGAGAAGTTGAAAAACTTAGCAATTTGATTGGGTCACTGTACTACTCCGATGGGGAAACAGTGAAAGATCTGGCAGAAAATGTAAACCATTTGAATTTTTATTGGCATCTTAACGGTACACATTTGCGTGATTTTTACTGCACATTCTCACATCTAGTTGCTACTTCATCCCCCCATCAAATGCAGGGTTTAACTAAGTTGTTGGGTGGAGTGTGA

mRNA sequence

ATGGCTCTTGTTGCCATCTACCAAGTAGTCCTGGAGGATGTTCTTCTCATGTTGGTAGAGAAAGACTCGAAAAAGGCAGCGTGGGAGGCGTTGCAAACAATGCATTTGACGATGATCATCAGTGGCATCCATTCATTAGGCGACATGATGGAGGAGATCTCCATCGTCAAGAAGTTCCTTCAAGTTCCCTCAAAATTCATGCAAATTGTTACCTTCATTGAACAGTTCATCAACCTCAAGAACATGTCAGTTGAGGAGATCGTTGGTCATCTTAAGGTCCATGAGGAGAGACTTCGTGGCTATAAAGACAAAGAGGAGAAGAAACACCTCTTATTCACACATGAGGAGTGGCTCGCACGGACGAAAAGGAATGATGCGGCTGACTCTTCTTTTCCAAGTACGAGGGGATGTGGCAGCCATAACAAGGAAAACAAAGGTCATGGACATGGTCGTAGATGTGGTGGTAGAGGAGGCCGTGAAATTCTTGAGCAGCAGCAGTGCCCCTGGAACATCACATCAAACCGCTCATTCTACATAAACCATCCAAATCACAAGGGTTTAACTAAGTTGTTGGGTGGAGTGTGA

Coding sequence (CDS)

ATGGCTCTTGTTGCCATCTACCAAGTAGTCCTGGAGGATGTTCTTCTCATGTTGGTAGAGAAAGACTCGAAAAAGGCAGCGTGGGAGGCGTTGCAAACAATGCATTTGACGATGATCATCAGTGGCATCCATTCATTAGGCGACATGATGGAGGAGATCTCCATCGTCAAGAAGTTCCTTCAAGTTCCCTCAAAATTCATGCAAATTGTTACCTTCATTGAACAGTTCATCAACCTCAAGAACATGTCAGTTGAGGAGATCGTTGGTCATCTTAAGGTCCATGAGGAGAGACTTCGTGGCTATAAAGACAAAGAGGAGAAGAAACACCTCTTATTCACACATGAGGAGTGGCTCGCACGGACGAAAAGGAATGATGCGGCTGACTCTTCTTTTCCAAGTACGAGGGGATGTGGCAGCCATAACAAGGAAAACAAAGGTCATGGACATGGTCGTAGATGTGGTGGTAGAGGAGGCCGTGAAATTCTTGAGCAGCAGCAGTGCCCCTGGAACATCACATCAAACCGCTCATTCTACATAAACCATCCAAATCACAAGGGTTTAACTAAGTTGTTGGGTGGAGTGTGA
Homology
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BLAST of CmoCh04G020660 vs. TrEMBL
Match: W5FLN4_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.0e-17
Identity = 63/156 (40.38%), Postives = 90/156 (57.69%), Query Frame = 1 

Query: 1   MALVAIYQVVLEDVLLMLVEKDSKKAAWEALQTMH------------------------- 60
           MAL AIYQ + E  L +L +K++ K+AWEAL+TMH                         
Sbjct: 590 MALAAIYQAIPEGTLFLLSQKNTAKSAWEALKTMHIGDQRLRDAKLQTLKLEFEGLRMKE 649

Query: 61  ----------LTMIISGIHSLGDMMEEISIVKKFLQ-VPSKFMQIVTFIEQFINLKNMSV 120
                     LT +++ IH+LG+ +EE   VKKFL+ VP+K++QI + IEQF +L  M++
Sbjct: 650 TESTDDFAVRLTTVVNKIHALGERIEEPYTVKKFLRAVPNKYLQIASTIEQFGDLNTMTL 709

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BLAST of CmoCh04G020660 vs. TrEMBL
Match: T1NBQ9_TRIUA (Uncharacterized protein OS=Triticum urartu PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.8e-17
Identity = 63/156 (40.38%), Postives = 89/156 (57.05%), Query Frame = 1 

Query: 1   MALVAIYQVVLEDVLLMLVEKDSKKAAWEALQTMH------------------------- 60
           MAL AIYQ + E  L +L +K + K+AWEAL+TMH                         
Sbjct: 584 MALAAIYQAIPEGTLFLLSQKKTAKSAWEALKTMHIGDQRLRDAKLQTLKLEFEALRMKE 643

Query: 61  ----------LTMIISGIHSLGDMMEEISIVKKFLQ-VPSKFMQIVTFIEQFINLKNMSV 120
                     LT +++ IH+LG+ +EE   VKKFL+ VP+K++QI + IEQF +L  M++
Sbjct: 644 TESVDDFAVRLTTVVNMIHALGEHIEEPYTVKKFLRAVPNKYLQIASTIEQFGDLNTMTL 703

[Close]
BLAST of CmoCh04G020660 vs. TrEMBL
Match: A0A0A9DE89_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.8e-17
Identity = 67/183 (36.61%), Postives = 99/183 (54.10%), Query Frame = 1 

Query: 1   MALVAIYQVVLEDVLLMLVEKDSKKAAWEALQTMH------------------------- 60
           MAL AIYQ + E++LL+LVEK++ K AW+ L+TMH                         
Sbjct: 61  MALAAIYQGIPEEILLLLVEKETAKEAWQMLKTMHMGVKRVMEAKVQTLKSELDVLRMKE 120

Query: 61  ----------LTMIISGIHSLGDMMEEISIVKKFLQV-PSKFMQIVTFIEQFINLKNMSV 120
                     LT IIS I +LG+ ++E  +VKK L+V P KF+Q+V+ IEQF + K M++
Sbjct: 121 GESIDDFAMKLTSIISKIRALGEKVDEAYVVKKLLRVMPQKFLQVVSTIEQFGDFKTMTM 180

Query: 121 EEIVGHLKVHEERLRGYKDKEEKKHLLFTHEEWLARTKRNDAADSSFPSTRGCGSHNKEN 148
           EE++G LK +EER+  Y +  E +HLL T  EW A+  +    +  F   +    +N + 
Sbjct: 181 EEVIGRLKAYEERICVYAN-NEGEHLLLTRAEWRAKEAKGGKRNRKFDKAKE-KCYNCQK 240

[Close]
BLAST of CmoCh04G020660 vs. TrEMBL
Match: M0V144_HORVD (Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.5e-17
Identity = 63/156 (40.38%), Postives = 89/156 (57.05%), Query Frame = 1 

Query: 1   MALVAIYQVVLEDVLLMLVEKDSKKAAWEALQTMH------------------------- 60
           MAL AIYQ + E  L +L +K + K+AWEAL+TMH                         
Sbjct: 64  MALAAIYQAIPEGTLFLLSQKKTAKSAWEALKTMHIGDQRLRDAKLQTLKLEFEGLRMKE 123

Query: 61  ----------LTMIISGIHSLGDMMEEISIVKKFLQ-VPSKFMQIVTFIEQFINLKNMSV 120
                     LT +++ IH+LG+ +EE   VKKFL+ VP+K++QI + IEQF +L  M++
Sbjct: 124 TESVDDFAVRLTTVVNKIHALGEHIEEPYAVKKFLRAVPNKYLQIASTIEQFGDLNAMTL 183

[Close]
BLAST of CmoCh04G020660 vs. TrEMBL
Match: W5G1G9_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 9.8e-17
Identity = 62/156 (39.74%), Postives = 89/156 (57.05%), Query Frame = 1 

Query: 1   MALVAIYQVVLEDVLLMLVEKDSKKAAWEALQTMH------------------------- 60
           MAL +IYQ + E  L +L +K + K+AWEAL+TMH                         
Sbjct: 590 MALASIYQAIPEGTLFLLSQKKTAKSAWEALKTMHIGDQRLRDAKLQTLKLEFEGLRMKE 649

Query: 61  ----------LTMIISGIHSLGDMMEEISIVKKFLQ-VPSKFMQIVTFIEQFINLKNMSV 120
                     LT +++ IH+LG+ +EE   VKKFL+ VP+K++QI + IEQF +L  M++
Sbjct: 650 TESVDDFAVRLTTVVNKIHALGEHIEEPYTVKKFLRAVPNKYLQIASTIEQFGDLNTMTL 709

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BLAST of CmoCh04G020660 vs. NCBI nr
Match: gi|440577427|emb|CCI55449.1| (PH01B001E05.5 [Phyllostachys edulis])

HSP 1 Score: 89.7 bits (221), Expect = 5.9e-15
Identity = 65/175 (37.14%), Postives = 92/175 (52.57%), Query Frame = 1 

Query: 1   MALVAIYQVVLEDVLLMLVEKDSKKAAWEALQTMHL------------------------ 60
           MAL AI+  V +D+L++L EK++ K  W  L  MHL                        
Sbjct: 78  MALAAIFLAVPKDMLMLLAEKETAKETWNTLNMMHLGADRVREARVQNLKSEFDNLHMRD 137

Query: 61  -------TM----IISGIHSLGDMMEEISIVKKFLQVPS-KFMQIVTFIEQFINLKNMSV 120
                  TM    I+S I  LGD MEE+ IV+KFL+  S KF  I + IEQF ++KNMS+
Sbjct: 138 TEQIDDFTMGLMTIVSKIRGLGDKMEEVYIVRKFLRAVSRKFSPIASTIEQFGDIKNMSI 197

Query: 121 EEIVGHLKVHEERLRGYKDKE-EKKHLLFTHEEWLARTKRNDAADSSFPSTRGCG 139
           +E++  LK HEE  R Y + + + +HLL T  EW AR+ +++    S  S+ G G
Sbjct: 198 KELIERLKTHEEGERRYSNSDGDDEHLLLTRTEWEARSSKHEGEGLSGGSSGGSG 252

[Close]
BLAST of CmoCh04G020660 vs. NCBI nr
Match: gi|802634548|ref|XP_012078055.1| (PREDICTED: uncharacterized protein LOC105638802 [Jatropha curcas])

HSP 1 Score: 86.3 bits (212), Expect = 6.5e-14
Identity = 73/206 (35.44%), Postives = 103/206 (50.00%), Query Frame = 1 

Query: 1   MALVAIYQVVLEDVLLMLVEKDSKKAAWEALQTMH------------------------- 60
           MAL  IYQ + ED LL L  K + K AW  L+TM+                         
Sbjct: 80  MALATIYQGIGEDTLLQLGAKKTAKEAWNMLKTMNQGADKVKEVRTQTLWREFEALRMSD 139

Query: 61  ----------LTMIISGIHSLGDMMEEISIVKKFLQ-VPSKFMQIVTFIEQFINLKNMSV 120
                     LT+I++ + SLG+ +E+  +VKK L+ V SKF+QIV+ IE+F +L   SV
Sbjct: 140 SENVDDFSGKLTIIVNKLRSLGNTVEDEKVVKKLLRSVSSKFLQIVSTIEEFSDLSTKSV 199

Query: 121 EEIVGHLKVHEERLRGYKDKEEKKHLLFTHEEWLAR--TKRNDAADSSFPSTRGCGSHNK 167
           E+++G LK HEERL     K E+  LL T  EW A+   K+N+ A +    TRG     +
Sbjct: 200 EDVIGSLKAHEERLLSCGGKSEET-LLLTRAEWKAKEEAKKNNKASA---DTRGGRGRER 259

[Close]
BLAST of CmoCh04G020660 vs. NCBI nr
Match: gi|19881713|gb|AAM01114.1|AC098682_18 (Putative retroelement [Oryza sativa Japonica Group])

HSP 1 Score: 82.4 bits (202), Expect = 9.5e-13
Identity = 70/202 (34.65%), Postives = 96/202 (47.52%), Query Frame = 1 

Query: 1   MALVAIYQVVLEDVLLMLVEKDSKKAAWEALQTMH------------------------- 60
           MAL AI Q V  ++L  L  KD+ K AWEA++TM                          
Sbjct: 89  MALAAILQAVPSEMLATLASKDTAKEAWEAVRTMRMGVERVREAKAQSLRKEFELIRMKE 148

Query: 61  ----------LTMIISGIHSLGDMMEEISIVKKFLQV-PSKFMQIVTFIEQFINLKNMSV 120
                     LT +++ IH+LG MMEE  +VKKFL+V PSK+ Q+   IEQ I+LK +SV
Sbjct: 149 GESVDDFAMRLTGLVNNIHTLGAMMEEEMVVKKFLRVVPSKYTQVAISIEQLIDLKTLSV 208

Query: 121 EEIVGHLKVHEERLR-GYKDKEEKKHLLFTHEEWLARTKRNDAADSSFPSTRGCGSHNKE 163
           EE+ G LK  EER        E    LL T E+W+ R K     D+   +   C     +
Sbjct: 209 EELTGRLKSVEERYEIDGNGSEAYGRLLLTEEQWMERMKSKKKKDTFDKAKVRC----YK 268

[Close]
BLAST of CmoCh04G020660 vs. NCBI nr
Match: gi|475587513|gb|EMT20567.1| (Cysteine-rich receptor-like protein kinase 25 [Aegilops tauschii])

HSP 1 Score: 79.7 bits (195), Expect = 6.1e-12
Identity = 60/171 (35.09%), Postives = 86/171 (50.29%), Query Frame = 1 

Query: 1   MALVAIYQVVLEDVLLMLVEKDSKKAAWEALQTMH-------------LTMIISGIHS-- 60
           MAL AIYQ +LED+   + EK++ KA WE L+ M              L M   G+H   
Sbjct: 55  MALAAIYQGILEDMPFPVSEKETCKATWETLKIMQMGGERVKDAKVQTLNMKFEGLHMKE 114

Query: 61  --------------------LGDMMEEISIVKKFLQ-VPSKFMQIVTFIEQFINLKNMSV 120
                               LG+  EE   +KKFL  +P+  +QI + IEQF +LK M+V
Sbjct: 115 SESVDYFAARLMTILNKVRVLGEKFEETCAMKKFLHAIPNMSLQIASTIEQFGDLKTMTV 174

Query: 121 EEIVGHLKVHEERLRGYKDKEEKKHLLFTHEEWLARTKRNDAADSSFPSTR 136
           EE++  LK ++ER+ G  D  + +HL+ T  EW +R KRN  ++ S    R
Sbjct: 175 EEVIRRLKAYDERIGGIGDAGQ-EHLVLTCTEWESRFKRNGGSNGSSKKRR 224

[Close]
BLAST of CmoCh04G020660 vs. NCBI nr
Match: gi|721687640|ref|XP_010239308.1| (PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Brachypodium distachyon])

HSP 1 Score: 77.0 bits (188), Expect = 4.0e-11
Identity = 63/188 (33.51%), Postives = 95/188 (50.53%), Query Frame = 1 

Query: 1   MALVAIYQVVLEDVLLMLVEKDSKKAAWEA---------------LQTM----------- 60
           +AL AI+ VV  DVL  L  K S K AW+                LQT+           
Sbjct: 68  LALAAIHAVVPNDVLQHLKGKKSAKDAWDTIKTLHQGHERVREANLQTLLRNYESLKMGE 127

Query: 61  ---------HLTMIISGIHSLGDMMEEISIVKKFLQVPS-KFMQIVTFIEQFINLKNMSV 120
                     +T +++GI  LG+ + EIS+V++FL+  S K++QIVT IEQ ++LK ++V
Sbjct: 128 DEAVDVFAARVTTLVNGIRDLGETLIEISVVRRFLRTASPKYIQIVTSIEQCVDLKTLTV 187

Query: 121 EEIVGHLKVHEERLR-GYKDKEEKKHLLFTHEEWLARTKRNDAADSSFPSTRGCGSHNKE 152
           E++VG  K H+ERLR  + D ++ +HL+ T  +W A   R     SS        S  + 
Sbjct: 188 EDLVGCYKAHDERLRMVFGDGKDDEHLMMTRAQWSAMAARKTGDSSS--------SSGRR 247

The following BLAST results are available for this feature:
BLAST of CmoCh04G020660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G020660 vs. TrEMBL
Match NameE-valueIdentityDescription
W5FLN4_WHEAT2.0e-1740.38Uncharacterized protein OS=Triticum aestivum PE=4 SV=1[more]
T1NBQ9_TRIUA5.8e-1740.38Uncharacterized protein OS=Triticum urartu PE=4 SV=1[more]
A0A0A9DE89_ARUDO5.8e-1736.61Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
M0V144_HORVD7.5e-1740.38Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1[more]
W5G1G9_WHEAT9.8e-1739.74Uncharacterized protein OS=Triticum aestivum PE=4 SV=1[more]
BLAST of CmoCh04G020660 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G020660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|440577427|emb|CCI55449.1|5.9e-1537.14PH01B001E05.5 [Phyllostachys edulis][more]
gi|802634548|ref|XP_012078055.1|6.5e-1435.44PREDICTED: uncharacterized protein LOC105638802 [Jatropha curcas][more]
gi|19881713|gb|AAM01114.1|AC098682_189.5e-1334.65Putative retroelement [Oryza sativa Japonica Group][more]
gi|475587513|gb|EMT20567.1|6.1e-1235.09Cysteine-rich receptor-like protein kinase 25 [Aegilops tauschii][more]
gi|721687640|ref|XP_010239308.1|4.0e-1133.51PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Brachypo... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0043167 ion binding
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G020660.1CmoCh04G020660.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..122
score: 1.7
NoneNo IPR availablePANTHERPTHR11439:SF173SUBFAMILY NOT NAMEDcoord: 1..122
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G020660CmaCh04G019530Cucurbita maxima (Rimu)cmacmoB728
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G020660Watermelon (97103) v2cmowmbB699
CmoCh04G020660Wax gourdcmowgoB0902
CmoCh04G020660Watermelon (Charleston Gray)cmowcgB623
CmoCh04G020660Watermelon (97103) v1cmowmB733
CmoCh04G020660Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G020660Cucurbita pepo (Zucchini)cmocpeB680
CmoCh04G020660Cucurbita pepo (Zucchini)cmocpeB682
CmoCh04G020660Bottle gourd (USVL1VR-Ls)cmolsiB623