CmaCh04G019530 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G019530
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	Cma_Chr04 : 10859043 .. 10864193 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGACGCCATCAAGTATGGTGACGTTGAGGAGCGCAAGAATAATATGGCTCTTACTACTATCTATCAAGCAGTCCTGGAGGACGTTCTTCTCATGTTGGTAGAGAAGGACGCGACAAAGGCAGCGTGGGAGACATTGCAAACAATGCATGTGGGTGTGGAATGTGTTAAAGAAGAAAATGTGTCGACCTTGAAGAGCGAGTTCGAGGCTATCCGCATGAAGGACGGTGAATCAAACCCTAGATGACTTTGTCATAAAGTTGACGATGATCGTTAGCGGCATCTGTTCATTAGGCGACATGATGGAGGAGATCTCCGTCGTCAAGAAGTTCCTTCAAGTTGTTCCCTCAAAATTCATGCAAATTGTTACCTTCATCGAGCAGTTCGCCAACCTCAAGAACATGTCAGTTGAGGAGGTCGTTGGTTGTCTTAAGGTCCATGAGGAGAGATTTTATGGCTATGAAGACAAAGAGGAGAAGAAACACCTCTTACTCACACATGAGGAGTGGCTCGCATGGATGAAAAGGAATGATGCGGCTGACTCTTCTTTTCCAAGTACGAGGGAACGTGGCAGCCATAACAAGGAAAACAAAGATCGTAGACATGGTCGTAGACGTGGTGGTAGAGGAGGCCGTGAAATTCTTGAGGTGCACTAGTTTGTGCGAATGAGAGAATACACATATTGAGGATAAGATGACCACAAATGGGGCGAGGTGCGCGTTGAAAGTCCATAATTGTTTGGTGAGTGTCTATAGAGATAGGCTGCCTCACCCACAGCTATGACAAACACTAAATAGTCGCGTCTACGTTACAAGTCTCAATGGTCAAGTCTAAGATGGGCAAACAACCAAAATAGGTCCGAAAGTAGGATAGCCCGTAGATAGGGTGCAAGAGTTGTTTGTTTTCCAGCAAGTCAAGTAACAAGTCGTCTAGACTCCGCTCTCACAATAGTTGGTGCCACAAAGAGGAATACAATAGTTGGTGTCAATCGGACACCGAACAAACGCTCCATGACACCGTATGACCGTTCGCCAAAATCACGCTATATGTGGAGTATTGAAAATGACTCAAAATGTACTATAGGGGGAGGCATGGTGTAGCTCTCCACCAACTCTGGGTCTTGTGGCCTAAGCGAGCTACGCTATGGCATATGCGTGTGTCACAATAAGGTGAGCATGCTGAGATGAGTGTCTTAGGCGACTTCCTTTGTAATGTGGTTTTCAAGGACAATATCGGGCGATACAGGTGTGCCAGTATTGTGTCTCTTCCCGCGTGTTGAAGGTTGATATATGCACCCGCTATCTAGTACGATATTCGTAAATGACATGACATTAGCATAGGAGGACCAATGTCTCGATAGAACCCAAATGGATGGATGTTTGGGATGTCCTAATGAGATGAACGACACGTGGGCCCATTCTCGATGGCATGACCGAATAAGTTGCGATGGTCGATGACACCTCGAGACTTGGGATGATGTCAAGACATATGAGTCATGTCGATTGGGAAAAAAATGACAAGATGAGATGCGATGTTGCATTGAGAGACCTTGGCCCCGAGTAGAGGCAAGGTCGAGCCGAATGACTTGGCCTAGTATAGAGGTAAGTCGGTTGTGTCGCAGACGATTGAACATGCATGCACGGTGGCATGTGTGGTCGAACAAGCTTGGATTCCGCACAAGCAATGTTTGGTTGGCAAAAACAAACCTCACCTAAGGTCCGATGAAACCACGAAGCCAGAGCGAAAAATATATATGGGGCTTGATTCCTCCTAAGGCTGGTCTTGATCGTGTCAAGATCTCAATGCGGCACAGTAAAAAAAGTAGGATTGTGACACTCCCTTCAAAAACCCGAGGTCCTTCCTCCTTCCTCAACCAGCAAGTCGCCTTAAATCAACCCTCACCCAATATGTCCTCACCTAGTCTCGATGAGGGATAAGAGTGAGGTCTTTCGCCGCCTGCCCTCTGTATGTGCCGCTAATGAGCGTACGACGTTGCAATTGCATCTGTCATTCTTTTATTATTATTATTTATTTATTCCTCCTTTGGACCGCTAGGTATTACTGTTGTCCTTCTCGCTAACGCATACGGTACGGTGTTGCAAAAAAACATATTTTTCGCCCTTTTTTCTAAATATATATTATATAATAAATTTCATTTATTTCTCTTCTATCCACAAGGTATTACACAAACAGATTGTTAGGCTTGCAGTATTGGAATTGATTAACGCTTCCGTTTGTGAAAAAGAAACGGTGATTTTGTCCATAAGAATTTTTTTTTTTTTTTTTTTTTTATATGGTAATTGAGAATATGAGAGGGTAGATGAGATCGTGTGAGTTAGGAGAAATATGGAAAAGAGTGGCAAAAAAGAGTAATCCCTTAACTCAAATCCAATAGAGGAGATCATGTGAGTTGAGAGAAATAAAGAAGATCGTGTGATTAAATGACTCGAATGCAATGCAAGAAAACTTCCACCCTTTAAATACCTACTAAAAAAAAGTTATGACCATAATTAACTAATTTATGAGAACTTTCTTACTCCTTTCAACCTTGCAAATGTTGACTTTCAAAACTTCACATAGTTCTTCTTCACTAGAGTTAGCTTTAGAGGTTGAACCGAGTCTATCCAATTTTGTAAATGAAGAATAAACGTTTTCTTAACCTTGGGTCGTGTAATAGGTCCAGTTAAAACTTGTGAAACACCATGATCCTTATTATATGTGAATAGAGGTATCCTATACAATGAGTTTGTATAAGACTAGATCATGAAATATTTAATACCTCTTTATAGATCCATTAATTGAGCATAATAATAATTCACAAGATGATTATATGCAACTCAATCTTAATCTTGAAAAGATGATTATATGCAACTCAATTTTAATCTTGAAAAAGTTATGAACTTTTGCACATGAATGCTTGTTCTTTGATTTGTATGGGTGAGAATGATTTTTATAGCTAATTCAATATGTCCACGATTCTCGAGACTGACCCAATAAGAATATGAGAACATAATCTTAAAGATGGAGTTCGTTCTTTCCTATATAGGAAAAATAGATGAGTAATTTCTGTTGGAACTAATTTTGGGACTTGAAAAATGAAACTTTACCTTCTCATGGTTTAAGAGTGACTTAGTTATGATATTTTTCATAAACAAATGGTTTATTTAAAGAATCAATGATACTTTAGTGGATAGATATATTACATGAGTAAAACAGACTTTTGACCTAATTGTAATTACGAATAATTTATGAATGATTGATTTGCTTGTAATGATTATATCAATAAAAAAATAAGTGTTGGATGTATAAAATCTTGTTTTTGGGAGAATGTTTTACAAATAATATATTTTAATATTTAATATACAATATTCTATTTAAATATCATAAGATATTTCCAATTTCAAATATATATTTATATTTGTTACATTAACTATTTTAATATCAAATTAATCCTGGGACCTGGGAGATTTGAGGTTCCCATGTTTTAACCTCGTGGAGGTTCCCATAAGTTGATATCTTTATGGTTTAATTCTAAATAAAATCAAAATCAATTTAATATTTTGAGTGGGGAATGAAACGTTTTTAATAATAGTTTTGATTATCTTAATTGTAATTCAATAATCTATGGTATGTAAAATCTAAAGTTACGAAGGTAATCTTAAGTAGTATGTAGTTAGTTATAGGAGAAGGTCACGCTCAAGAAATGGCTTAAAGGATCCATTGTATGTAATTTTTACAAACTATTTGATTCGAATTCGTGATTTGAAGAGATGTGAGAGTTGACGTATTTTATACCATGCATTTGTATAAGACTAGATTATAAATTATTTAATATCTATTTATAAAGTGTTAATTAGGAAAATCCATATTTTATAGGAGGATCCTATAGGACTAGATCTTAAACCTAAGTGGGCTATAAACCTCTATATAGTAGGGCTTGTCCATTTATTTGCACGAGTAAGAACGACTTTTGTAGCATATTTAACATGTCAATCATTTTGAAGAAAGCTAATAACATAATGGTACGAGATATAATTTACTCATCATAAACTCAAAAATAAAATTTTAATATTTTTGTTACTATTAAATGGGTAAAAATAGAATTTTGGTGGAAGTAAAATCTAACTATTTAATTAATTGATTTTAGTCGGCCAAAAAGGAGAGAATTTTGGTTTATTTATTTATTTAATTTTTTTAAATACCCCAGTTTCTTCGTTCTCGCGCCCAACATCTCCTAAAAAAGGTACCCTTCTTTTCGTTCTCCCGCTCATCTTCCCAAACCTTCTCTCTCAAATCTCATTTTATTTACCACTTTTATTTTCAACTCTCATTTCAGTTCAGCACTAGGGTTTGCTCTGCTTTGCCCATACGCATTTCTGGGGAGGTCGATAGCAGCAGCAGTGCCCCTGGAACATCAAATCAAACCGCTCATTCTACATAAACCATCCAAATCACAAGGTAAGCTTCTTATCAAAGCTATGGGGTTACTACAAATTTGTTTCTCCCACCGCTTTTGTTTTTGTTTGGTTAACTTTTTTTTTTTAAATAAATTAAGTTTCAACCTCCAATTCCATCAGGTTCTTATCACTTTACCGATTACCGAGTTTTGTCTATGAAAAAAAGTCCTAAAAATTGCTCAAATCTTAGTTTATGGAACCTTCTTTTCTTGTTGTTCAAGTGATGATTGAGTTTGGATTATTAAACTTGCTAAAATACATTTTTCGTTTCAATTATCATTTTGTCTAAATAATGCTTCCACGAAGAAAGAAGCTAAGAAGGAAAATAATGGACCAACAACTAGTCCTAAAGTCAAAAGGTTTTATCGAGGACAATATGCCTAAATTATATCGACTTGGAATAAAAAAAATGAATTGAGGGGGATTGAAATGCTGTAACAGAGAAGTGAATTGACTGTGTGCTAACTTTGGTTTCAATTGGTCTGTATTGTCCGGGGAGAAGATGAAAAACTTAGCAATTTGATTGGGTCACTGTACTACTCCGATGGGGAGACAGTGAAAGATCTGACAGAAAATGTAAACCATTGGAATTTTTATTGGCATCTTAACGGAACACATTTGCATGATTTTTACTGCACGTTCTCACATCTAGTTACTACTTCATCCCCCCATCAAATGCAGGGTTTAACTAA

mRNA sequence

ATGTGGGACGCCATCAAGTATGGTGACGTTGAGGAGCGCAAGAATAATATGGCTCTTACTACTATCTATCAAGCAGTCCTGGAGGACGTTCTTCTCATGTTGGTAGAGAAGGACGCGACAAAGGCAGCGTGGGAGACATTGCAAACAATGCATGTGGGTGTGGAATGTGTTAAAGAAGAAAATGTGTCGACCTTGAAGAGCGAGTTCGAGGCTATCCGCATGAAGGACGGCGACATGATGGAGGAGATCTCCGTCGTCAAGAAGTTCCTTCAAGTTGTTCCCTCAAAATTCATGCAAATTGTTACCTTCATCGAGCAGTTCGCCAACCTCAAGAACATGTCAGTTGAGGAGGTCGTTGGTTGTCTTAAGGTCCATGAGGAGAGATTTTATGGCTATGAAGACAAAGAGGAGAAGAAACACCTCTTACTCACACATGAGGAGTGGCTCGCATGGATGAAAAGGAATGATGCGGCTGACTCTTCTTTTCCAAGTACGAGGGAACGTGGCAGCCATAACAAGGAAAACAAAGATCGTAGACATGGTCGTAGACGTGGTGGTAGAGGAGGCCGTGAAATTCTTGAGGTGCACTATTCAGCACTAGGGTTTGCTCTGCTTTGCCCATACGCATTTCTGGGGAGGTCGATAGCAGCAGCAGTGCCCCTGGAACATCAAATCAAACCGCTCATTCTACATAAACCATCCAAATCACAAGGGTTTAACTAA

Coding sequence (CDS)

ATGTGGGACGCCATCAAGTATGGTGACGTTGAGGAGCGCAAGAATAATATGGCTCTTACTACTATCTATCAAGCAGTCCTGGAGGACGTTCTTCTCATGTTGGTAGAGAAGGACGCGACAAAGGCAGCGTGGGAGACATTGCAAACAATGCATGTGGGTGTGGAATGTGTTAAAGAAGAAAATGTGTCGACCTTGAAGAGCGAGTTCGAGGCTATCCGCATGAAGGACGGCGACATGATGGAGGAGATCTCCGTCGTCAAGAAGTTCCTTCAAGTTGTTCCCTCAAAATTCATGCAAATTGTTACCTTCATCGAGCAGTTCGCCAACCTCAAGAACATGTCAGTTGAGGAGGTCGTTGGTTGTCTTAAGGTCCATGAGGAGAGATTTTATGGCTATGAAGACAAAGAGGAGAAGAAACACCTCTTACTCACACATGAGGAGTGGCTCGCATGGATGAAAAGGAATGATGCGGCTGACTCTTCTTTTCCAAGTACGAGGGAACGTGGCAGCCATAACAAGGAAAACAAAGATCGTAGACATGGTCGTAGACGTGGTGGTAGAGGAGGCCGTGAAATTCTTGAGGTGCACTATTCAGCACTAGGGTTTGCTCTGCTTTGCCCATACGCATTTCTGGGGAGGTCGATAGCAGCAGCAGTGCCCCTGGAACATCAAATCAAACCGCTCATTCTACATAAACCATCCAAATCACAAGGGTTTAACTAA

Protein sequence

MWDAIKYGDVEERKNNMALTTIYQAVLEDVLLMLVEKDATKAAWETLQTMHVGVECVKEENVSTLKSEFEAIRMKDGDMMEEISVVKKFLQVVPSKFMQIVTFIEQFANLKNMSVEEVVGCLKVHEERFYGYEDKEEKKHLLLTHEEWLAWMKRNDAADSSFPSTRERGSHNKENKDRRHGRRRGGRGGREILEVHYSALGFALLCPYAFLGRSIAAAVPLEHQIKPLILHKPSKSQGFN

Homology

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BLAST of CmaCh04G019530 vs. TrEMBL
Match: A0A0A9DE89_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 7.3e-30
Identity = 78/190 (41.05%), Postives = 116/190 (61.05%), Query Frame = 1


Query: 1   MWDAIKYG-DVEERKNNMALTTIYQAVLEDVLLMLVEKDATKAAWETLQTMHVGVECVKE 60
           +W+AI    D++ RK+ MAL  IYQ + E++LL+LVEK+  K AW+ L+TMH+GV+ V E
Sbjct: 44  VWEAIDLEKDIDMRKDQMALAAIYQGIPEEILLLLVEKETAKEAWQMLKTMHMGVKRVME 103

Query: 61  ENVSTLKSEFEAIRMKDGDMMEEIS---------------------VVKKFLQVVPSKFM 120
             V TLKSE + +RMK+G+ +++ +                     VVKK L+V+P KF+
Sbjct: 104 AKVQTLKSELDVLRMKEGESIDDFAMKLTSIISKIRALGEKVDEAYVVKKLLRVMPQKFL 163

Query: 121 QIVTFIEQFANLKNMSVEEVVGCLKVHEERFYGYEDKEEKKHLLLTHEEWLAWMKRNDAA 169
           Q+V+ IEQF + K M++EEV+G LK +EER   Y +  E +HLLLT  EW A   +    
Sbjct: 164 QVVSTIEQFGDFKTMTMEEVIGRLKAYEERICVYAN-NEGEHLLLTRAEWRAKEAKGGKR 223

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BLAST of CmaCh04G019530 vs. TrEMBL
Match: T1NBQ9_TRIUA (Uncharacterized protein OS=Triticum urartu PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-27
Identity = 80/190 (42.11%), Postives = 113/190 (59.47%), Query Frame = 1


Query: 1   MWDAIKYGD---VEERKNNMALTTIYQAVLEDVLLMLVEKDATKAAWETLQTMHVGVECV 60
           +WDA+   D   V  RKN MAL  IYQA+ E  L +L +K   K+AWE L+TMH+G + +
Sbjct: 565 VWDAVVAKDHPKVSARKNQMALAAIYQAIPEGTLFLLSQKKTAKSAWEALKTMHIGDQRL 624

Query: 61  KEENVSTLKSEFEAIRMKD---------------------GDMMEEISVVKKFLQVVPSK 120
           ++  + TLK EFEA+RMK+                     G+ +EE   VKKFL+ VP+K
Sbjct: 625 RDAKLQTLKLEFEALRMKETESVDDFAVRLTTVVNMIHALGEHIEEPYTVKKFLRAVPNK 684

Query: 121 FMQIVTFIEQFANLKNMSVEEVVGCLKVHEERFYGYEDKEEKKHLLLTHEEWLAWMKRND 167
           ++QI + IEQF +L  M+++EV+G LKVHEER  G     EK++ LLT  EW+A   R +
Sbjct: 685 YLQIASTIEQFGDLNTMTLQEVIGRLKVHEERL-GRLGATEKENELLTRAEWIA---REE 744

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BLAST of CmaCh04G019530 vs. TrEMBL
Match: W5G1G9_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.5e-27
Identity = 75/174 (43.10%), Postives = 106/174 (60.92%), Query Frame = 1


Query: 1   MWDAIKYGD---VEERKNNMALTTIYQAVLEDVLLMLVEKDATKAAWETLQTMHVGVECV 60
           +WDA+   D   V  RKN MAL +IYQA+ E  L +L +K   K+AWE L+TMH+G + +
Sbjct: 571 VWDAVVAKDHPKVSARKNQMALASIYQAIPEGTLFLLSQKKTAKSAWEALKTMHIGDQRL 630

Query: 61  KEENVSTLKSEFEAIRMKD---------------------GDMMEEISVVKKFLQVVPSK 120
           ++  + TLK EFE +RMK+                     G+ +EE   VKKFL+ VP+K
Sbjct: 631 RDAKLQTLKLEFEGLRMKETESVDDFAVRLTTVVNKIHALGEHIEEPYTVKKFLRAVPNK 690

Query: 121 FMQIVTFIEQFANLKNMSVEEVVGCLKVHEERFYGYEDKEEKKHLLLTHEEWLA 151
           ++QI + IEQF +L  M+++EV+G LKVHEER  G     EK++ LLT  EW+A
Sbjct: 691 YLQIASTIEQFGDLNTMTLQEVIGRLKVHEERL-GRLGATEKENELLTRAEWIA 743

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BLAST of CmaCh04G019530 vs. TrEMBL
Match: Q7G5Z8_ORYSJ (Putative retroelement OS=Oryza sativa subsp. japonica GN=OSJNAa0053D03.16 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.8e-27
Identity = 78/182 (42.86%), Postives = 103/182 (56.59%), Query Frame = 1


Query: 1   MWDAIKYGDVEERKNNMALTTIYQAVLEDVLLMLVEKDATKAAWETLQTMHVGVECVKEE 60
           +WDA++ G+ E R + MAL  I QAV  ++L  L  KD  K AWE ++TM +GVE V+E 
Sbjct: 73  VWDAVELGNTEHRIDRMALAAILQAVPSEMLATLASKDTAKEAWEAVRTMRMGVERVREA 132

Query: 61  NVSTLKSEFEAIRMKDGD---------------------MMEEISVVKKFLQVVPSKFMQ 120
              +L+ EFE IRMK+G+                     MMEE  VVKKFL+VVPSK+ Q
Sbjct: 133 KAQSLRKEFELIRMKEGESVDDFAMRLTGLVNNIHTLGAMMEEEMVVKKFLRVVPSKYTQ 192

Query: 121 IVTFIEQFANLKNMSVEEVVGCLKVHEERF-YGYEDKEEKKHLLLTHEEWLAWMKRNDAA 161
           +   IEQ  +LK +SVEE+ G LK  EER+       E    LLLT E+W+  MK     
Sbjct: 193 VAISIEQLIDLKTLSVEELTGRLKSVEERYEIDGNGSEAYGRLLLTEEQWMERMKSKKKK 252

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BLAST of CmaCh04G019530 vs. TrEMBL
Match: W5FLN4_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 9.9e-27
Identity = 74/174 (42.53%), Postives = 105/174 (60.34%), Query Frame = 1


Query: 1   MWDAIKYGD---VEERKNNMALTTIYQAVLEDVLLMLVEKDATKAAWETLQTMHVGVECV 60
           +WDA+   D   V  R N MAL  IYQA+ E  L +L +K+  K+AWE L+TMH+G + +
Sbjct: 571 VWDAVVAKDHPKVSARNNQMALAAIYQAIPEGTLFLLSQKNTAKSAWEALKTMHIGDQRL 630

Query: 61  KEENVSTLKSEFEAIRMKD---------------------GDMMEEISVVKKFLQVVPSK 120
           ++  + TLK EFE +RMK+                     G+ +EE   VKKFL+ VP+K
Sbjct: 631 RDAKLQTLKLEFEGLRMKETESTDDFAVRLTTVVNKIHALGERIEEPYTVKKFLRAVPNK 690

Query: 121 FMQIVTFIEQFANLKNMSVEEVVGCLKVHEERFYGYEDKEEKKHLLLTHEEWLA 151
           ++QI + IEQF +L  M+++EV+G LKVHEER  G     EK++ LLT  EW+A
Sbjct: 691 YLQIASTIEQFGDLNTMTLQEVIGRLKVHEERL-GRLGAAEKENELLTRAEWIA 743

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BLAST of CmaCh04G019530 vs. NCBI nr
Match: gi|19881713|gb|AAM01114.1|AC098682_18 (Putative retroelement [Oryza sativa Japonica Group])

HSP 1 Score: 129.4 bits (324), Expect = 8.3e-27
Identity = 78/182 (42.86%), Postives = 103/182 (56.59%), Query Frame = 1


Query: 1   MWDAIKYGDVEERKNNMALTTIYQAVLEDVLLMLVEKDATKAAWETLQTMHVGVECVKEE 60
           +WDA++ G+ E R + MAL  I QAV  ++L  L  KD  K AWE ++TM +GVE V+E 
Sbjct: 73  VWDAVELGNTEHRIDRMALAAILQAVPSEMLATLASKDTAKEAWEAVRTMRMGVERVREA 132

Query: 61  NVSTLKSEFEAIRMKDGD---------------------MMEEISVVKKFLQVVPSKFMQ 120
              +L+ EFE IRMK+G+                     MMEE  VVKKFL+VVPSK+ Q
Sbjct: 133 KAQSLRKEFELIRMKEGESVDDFAMRLTGLVNNIHTLGAMMEEEMVVKKFLRVVPSKYTQ 192

Query: 121 IVTFIEQFANLKNMSVEEVVGCLKVHEERF-YGYEDKEEKKHLLLTHEEWLAWMKRNDAA 161
           +   IEQ  +LK +SVEE+ G LK  EER+       E    LLLT E+W+  MK     
Sbjct: 193 VAISIEQLIDLKTLSVEELTGRLKSVEERYEIDGNGSEAYGRLLLTEEQWMERMKSKKKK 252

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BLAST of CmaCh04G019530 vs. NCBI nr
Match: gi|440577427|emb|CCI55449.1| (PH01B001E05.5 [Phyllostachys edulis])

HSP 1 Score: 124.8 bits (312), Expect = 2.1e-25
Identity = 73/191 (38.22%), Postives = 109/191 (57.07%), Query Frame = 1


Query: 1   MWDAIKYGDVEERKNNMALTTIYQAVLEDVLLMLVEKDATKAAWETLQTMHVGVECVKEE 60
           +W+AI   +V ER++ MAL  I+ AV +D+L++L EK+  K  W TL  MH+G + V+E 
Sbjct: 62  VWNAIVDEEVSERQDQMALAAIFLAVPKDMLMLLAEKETAKETWNTLNMMHLGADRVREA 121

Query: 61  NVSTLKSEFEAIRMKD---------------------GDMMEEISVVKKFLQVVPSKFMQ 120
            V  LKSEF+ + M+D                     GD MEE+ +V+KFL+ V  KF  
Sbjct: 122 RVQNLKSEFDNLHMRDTEQIDDFTMGLMTIVSKIRGLGDKMEEVYIVRKFLRAVSRKFSP 181

Query: 121 IVTFIEQFANLKNMSVEEVVGCLKVHEERFYGYEDKE-EKKHLLLTHEEWLAWMKRNDAA 170
           I + IEQF ++KNMS++E++  LK HEE    Y + + + +HLLLT  EW A   +++  
Sbjct: 182 IASTIEQFGDIKNMSIKELIERLKTHEEGERRYSNSDGDDEHLLLTRTEWEARSSKHEGE 241

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BLAST of CmaCh04G019530 vs. NCBI nr
Match: gi|802634548|ref|XP_012078055.1| (PREDICTED: uncharacterized protein LOC105638802 [Jatropha curcas])

HSP 1 Score: 124.8 bits (312), Expect = 2.1e-25
Identity = 88/212 (41.51%), Postives = 114/212 (53.77%), Query Frame = 1


Query: 1   MWDAIKY-GDVEERKNNMALTTIYQAVLEDVLLMLVEKDATKAAWETLQTMHVGVECVKE 60
           +WDA++  G V++R++ MAL TIYQ + ED LL L  K   K AW  L+TM+ G + VKE
Sbjct: 63  VWDAVESPGPVDKRRDTMALATIYQGIGEDTLLQLGAKKTAKEAWNMLKTMNQGADKVKE 122

Query: 61  ENVSTLKSEFEAIRMKD---------------------GDMMEEISVVKKFLQVVPSKFM 120
               TL  EFEA+RM D                     G+ +E+  VVKK L+ V SKF+
Sbjct: 123 VRTQTLWREFEALRMSDSENVDDFSGKLTIIVNKLRSLGNTVEDEKVVKKLLRSVSSKFL 182

Query: 121 QIVTFIEQFANLKNMSVEEVVGCLKVHEERFYGYEDKEEKKHLLLTHEEWLAWMKRNDAA 180
           QIV+ IE+F++L   SVE+V+G LK HEER      K E+  LLLT  EW A        
Sbjct: 183 QIVSTIEEFSDLSTKSVEDVIGSLKAHEERLLSCGGKSEET-LLLTRAEWKA-------- 242

Query: 181 DSSFPSTRERGSHNKENKDRR--HGRRRGGRG 189
                   E   +NK + D R   GR RGGRG
Sbjct: 243 ------KEEAKKNNKASADTRGGRGRERGGRG 259

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BLAST of CmaCh04G019530 vs. NCBI nr
Match: gi|475587513|gb|EMT20567.1| (Cysteine-rich receptor-like protein kinase 25 [Aegilops tauschii])

HSP 1 Score: 121.7 bits (304), Expect = 1.7e-24
Identity = 75/191 (39.27%), Postives = 105/191 (54.97%), Query Frame = 1


Query: 2   WDAIKYGD----VEERKNNMALTTIYQAVLEDVLLMLVEKDATKAAWETLQTMHVGVECV 61
           WDA K  D     EE+K+ MAL  IYQ +LED+   + EK+  KA WETL+ M +G E V
Sbjct: 36  WDAAKPKDQEVPTEEKKDQMALAAIYQGILEDMPFPVSEKETCKATWETLKIMQMGGERV 95

Query: 62  KEENVSTLKSEFEAIRMKD---------------------GDMMEEISVVKKFLQVVPSK 121
           K+  V TL  +FE + MK+                     G+  EE   +KKFL  +P+ 
Sbjct: 96  KDAKVQTLNMKFEGLHMKESESVDYFAARLMTILNKVRVLGEKFEETCAMKKFLHAIPNM 155

Query: 122 FMQIVTFIEQFANLKNMSVEEVVGCLKVHEERFYGYEDKEEKKHLLLTHEEWLAWMKRND 168
            +QI + IEQF +LK M+VEEV+  LK ++ER  G  D  + +HL+LT  EW +  KRN 
Sbjct: 156 SLQIASTIEQFGDLKTMTVEEVIRRLKAYDERIGGIGDAGQ-EHLVLTCTEWESRFKRNG 215

[Close]

BLAST of CmaCh04G019530 vs. NCBI nr
Match: gi|110289190|gb|AAP54120.2| (retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 116.3 bits (290), Expect = 7.3e-23
Identity = 73/191 (38.22%), Postives = 107/191 (56.02%), Query Frame = 1


Query: 1   MWDAIKYGDVEERKNNMALTTIYQAVLEDVLLMLVEKDATKAAWETLQTMHVGVECVKEE 60
           +W AI+ G  E + + MAL+ I +AV  ++L  L  KD  K AWE+++TM VGV  V+E 
Sbjct: 380 LWSAIEPGYAEYQDDRMALSAILRAVPPEMLPTLAVKDTAKEAWESVKTMRVGVARVREA 439

Query: 61  NVSTLKSEFEAIRMKD---------------------GDMMEEISVVKKFLQVVPSKFMQ 120
              TL++EFE IRMK+                     GD +EE  VV+KFL+VVPS+F+Q
Sbjct: 440 KAQTLRNEFELIRMKESESVDDFSMRLNAIVNNLRMLGDPLEEEKVVQKFLRVVPSRFVQ 499

Query: 121 IVTFIEQFANLKNMSVEEVVGCLKVHEERFYGYEDK--EEKKHLLLTHEEWLAWMKRNDA 169
           +   IEQ  +LK +S+EEV G L+  EER+   ++    +   LLLT E+WL   +    
Sbjct: 500 VAIAIEQLLDLKTLSIEEVTGRLRTVEERYRPGDNDGGVDGGRLLLTEEQWLERRRNRKK 559

The following BLAST results are available for this feature:

BLAST of CmaCh04G019530 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G019530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A9DE89_ARUDO	7.3e-30	41.05	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]
T1NBQ9_TRIUA	1.2e-27	42.11	Uncharacterized protein OS=Triticum urartu PE=4 SV=1	[more]
W5G1G9_WHEAT	4.5e-27	43.10	Uncharacterized protein OS=Triticum aestivum PE=4 SV=1	[more]
Q7G5Z8_ORYSJ	5.8e-27	42.86	Putative retroelement OS=Oryza sativa subsp. japonica GN=OSJNAa0053D03.16 PE=4 S...	[more]
W5FLN4_WHEAT	9.9e-27	42.53	Uncharacterized protein OS=Triticum aestivum PE=4 SV=1	[more]

BLAST of CmaCh04G019530 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh04G019530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|19881713\|gb\|AAM01114.1\|AC098682_18	8.3e-27	42.86	Putative retroelement [Oryza sativa Japonica Group]	[more]
gi\|440577427\|emb\|CCI55449.1\|	2.1e-25	38.22	PH01B001E05.5 [Phyllostachys edulis]	[more]
gi\|802634548\|ref\|XP_012078055.1\|	2.1e-25	41.51	PREDICTED: uncharacterized protein LOC105638802 [Jatropha curcas]	[more]
gi\|475587513\|gb\|EMT20567.1\|	1.7e-24	39.27	Cysteine-rich receptor-like protein kinase 25 [Aegilops tauschii]	[more]
gi\|110289190\|gb\|AAP54120.2\|	7.3e-23	38.22	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Gro...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G019530.1	CmaCh04G019530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 6..187 score: 5.4
None	No IPR available	PANTHER	PTHR11439:SF173	SUBFAMILY NOT NAMED	coord: 6..187 score: 5.4
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 12..82 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G019530	CmoCh11G012360	Cucurbita moschata (Rifu)	cmacmoB679
CmaCh04G019530	CmoCh04G020660	Cucurbita moschata (Rifu)	cmacmoB728

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G019530	Bottle gourd (USVL1VR-Ls)	cmalsiB635
CmaCh04G019530	Cucumber (Gy14) v2	cgybcmaB670
CmaCh04G019530	Melon (DHL92) v3.6.1	cmamedB737
CmaCh04G019530	Watermelon (97103) v2	cmawmbB726
CmaCh04G019530	Cucurbita maxima (Rimu)	cmacmaB550
CmaCh04G019530	Watermelon (Charleston Gray)	cmawcgB622
CmaCh04G019530	Watermelon (97103) v1	cmawmB739