CmoCh04G020390 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G020390
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionNAD(P)-binding Rossmann-fold superfamily protein
LocationCmo_Chr04 : 11139848 .. 11140401 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTATTCGCTTTGGAGAAGACAAATCCATGGCTGCAACCATTTCAAACCATGAATTACAACAAGAAACCAAGAAGACAGTTCTAATAACTGGGGTGACCAGAGGGATAGGACGAGCTTTGGCATTGGAGTTTGCGAAACATGGCCATCTAATTATTGGTTGCGGCCGCGACAAAACCAATTTGGATTCACTTCAGCTGCAACTCTCTAATGCTTCCCCGCAAAGCCATTTGCTCTTCATCGCTGATGTGGTTCGTAATGCTTTTTCCTTTGCTATGTCTTAGTGTTTATCTGTTTAATTTTTTTTTATTTTAATTTTGCAGAAGTCAGATGACAGCGTCCGACAAATGGCACACACGGTCCGGGACAAACTTGGTTCTCTTGACATCATTGATATGTTTGTGCTACAGTGTTTTTTTCTTCATTTCGGATAAAGTAATGTAAACACGAAGTTTATGATATGAACTAAGAGACCTCACTCATACAACATACTTCGACCAAGATGTGAAGAAAATGTTGTTGAAATTATAAAAAAAAAATATATATTTCAATTCATG

mRNA sequence

GTATTCGCTTTGGAGAAGACAAATCCATGGCTGCAACCATTTCAAACCATGAATTACAACAAGAAACCAAGAAGACAGTTCTAATAACTGGGGTGACCAGAGGGATAGGACGAGCTTTGGCATTGGAGTTTGCGAAACATGGCCATCTAATTATTGGTTGCGGCCGCGACAAAACCAATTTGGATTCACTTCAGCTGCAACTCTCTAATGCTTCCCCGCAAAGCCATTTGCTCTTCATCGCTGATGTGAAGTCAGATGACAGCGTCCGACAAATGGCACACACGGTCCGGGACAAACTTGGTTCTCTTGACATCATTGATATGTTTGTGCTACAGTGTTTTTTTCTTCATTTCGGATAAAGTAATGTAAACACGAAGTTTATGATATGAACTAAGAGACCTCACTCATACAACATACTTCGACCAAGATGTGAAGAAAATGTTGTTGAAATTATAAAAAAAAAATATATATTTCAATTCATG

Coding sequence (CDS)

ATGGCTGCAACCATTTCAAACCATGAATTACAACAAGAAACCAAGAAGACAGTTCTAATAACTGGGGTGACCAGAGGGATAGGACGAGCTTTGGCATTGGAGTTTGCGAAACATGGCCATCTAATTATTGGTTGCGGCCGCGACAAAACCAATTTGGATTCACTTCAGCTGCAACTCTCTAATGCTTCCCCGCAAAGCCATTTGCTCTTCATCGCTGATGTGAAGTCAGATGACAGCGTCCGACAAATGGCACACACGGTCCGGGACAAACTTGGTTCTCTTGACATCATTGATATGTTTGTGCTACAGTGTTTTTTTCTTCATTTCGGATAA
BLAST of CmoCh04G020390 vs. Swiss-Prot
Match: PTALR_ARATH (NADPH-dependent pterin aldehyde reductase OS=Arabidopsis thaliana GN=At1g10310 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-18
Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = 1

Query: 16 KTVLITGVTRGIGRALALEFAKHGHLIIGCGRDKTNLDSLQLQLSNASPQSHLLFIADVK 75
          +TVLITGV++G+GRALALE AK GH +IGC R +  L +LQ +LS+++  +HLL  ADVK
Sbjct: 18 RTVLITGVSKGLGRALALELAKRGHTVIGCARSQEKLTALQSELSSST--NHLLLTADVK 77

Query: 76 SDDSVRQMAHTVRDKLGSLDII 98
          S+ SV +MAHT+ +K G  DII
Sbjct: 78 SNSSVEEMAHTIVEKKGVPDII 97

BLAST of CmoCh04G020390 vs. Swiss-Prot
Match: DHRS3_MOUSE (Short-chain dehydrogenase/reductase 3 OS=Mus musculus GN=Dhrs3 PE=1 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 2.6e-07
Identity = 35/90 (38.89%), Postives = 53/90 (58.89%), Query Frame = 1

Query: 9   ELQQETKKTVLITGVTRGIGRALALEFAKHG-HLIIGCGRDKTNLDSLQLQLSNASPQSH 68
           +L+  ++++VLITG  RGIGR LA EFA+ G   I+  GR +  L     ++     + H
Sbjct: 32  KLRDLSRESVLITGGGRGIGRHLAREFAERGARKIVLWGRTEKCLKETTEEIRQMGTECH 91

Query: 69  LLFIADVKSDDSVRQMAHTVRDKLGSLDII 98
             FI DV + + V QMA  VR+K+G + I+
Sbjct: 92  -YFICDVGNREEVYQMAKAVREKVGDITIL 120

BLAST of CmoCh04G020390 vs. Swiss-Prot
Match: DHRS3_HUMAN (Short-chain dehydrogenase/reductase 3 OS=Homo sapiens GN=DHRS3 PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06
Identity = 34/90 (37.78%), Postives = 51/90 (56.67%), Query Frame = 1

Query: 9   ELQQETKKTVLITGVTRGIGRALALEFAKHG-HLIIGCGRDKTNLDSLQLQLSNASPQSH 68
           +L+  +++ VLITG  RGIGR LA EFA+ G   I+  GR +  L     ++     + H
Sbjct: 32  KLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIRQMGTECH 91

Query: 69  LLFIADVKSDDSVRQMAHTVRDKLGSLDII 98
             FI DV + + V Q A  VR+K+G + I+
Sbjct: 92  -YFICDVGNREEVYQTAKAVREKVGDITIL 120

BLAST of CmoCh04G020390 vs. Swiss-Prot
Match: DHRS3_BOVIN (Short-chain dehydrogenase/reductase 3 OS=Bos taurus GN=DHRS3 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06
Identity = 34/90 (37.78%), Postives = 51/90 (56.67%), Query Frame = 1

Query: 9   ELQQETKKTVLITGVTRGIGRALALEFAKHG-HLIIGCGRDKTNLDSLQLQLSNASPQSH 68
           +L+  +++ VLITG  RGIGR LA EFA+ G   I+  GR +  L     ++     + H
Sbjct: 32  KLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIRQMGTECH 91

Query: 69  LLFIADVKSDDSVRQMAHTVRDKLGSLDII 98
             FI DV + + V Q A  VR+K+G + I+
Sbjct: 92  -YFICDVGNREEVYQTAKAVREKVGDITIL 120

BLAST of CmoCh04G020390 vs. Swiss-Prot
Match: DNRU_STRS5 (Putative daunorubicin C-13 ketoreductase DnrU OS=Streptomyces sp. (strain C5) PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.2e-06
Identity = 28/82 (34.15%), Postives = 46/82 (56.10%), Query Frame = 1

Query: 16 KTVLITGVTRGIGRALALEFAKHGHLIIGCGRDKTNLDSLQLQLSNASPQSHLLFIADVK 75
          +TVLITG T GIGRA AL  A+ G  ++  GRD   L ++  +++  +  +   F AD  
Sbjct: 18 RTVLITGATSGIGRAAALAIARQGARVVLVGRDPERLRTVTNEVARTAGPAPDAFRADFA 77

Query: 76 SDDSVRQMAHTVRDKLGSLDII 98
              VR++   +RD+   +D++
Sbjct: 78 ELRQVRELGERLRDRYPRIDVM 99

BLAST of CmoCh04G020390 vs. TrEMBL
Match: A0A0A0KIN8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G011650 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-25
Identity = 59/88 (67.05%), Postives = 75/88 (85.23%), Query Frame = 1

Query: 10  LQQETKKTVLITGVTRGIGRALALEFAKHGHLIIGCGRDKTNLDSLQLQLSNASPQSHLL 69
           ++ ET K ++I+GV+RG+GRALALE AK GH IIGC RDK  LDSLQLQLSNASP++HLL
Sbjct: 32  MEAETTKVIVISGVSRGLGRALALELAKLGHTIIGCSRDKIKLDSLQLQLSNASPRNHLL 91

Query: 70  FIADVKSDDSVRQMAHTVRDKLGSLDII 98
           F  DVKS++S+R+MA TV++K GS+DII
Sbjct: 92  FNFDVKSNESIREMAQTVKEKFGSVDII 119

BLAST of CmoCh04G020390 vs. TrEMBL
Match: A0A0D3DNW4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-18
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 1

Query: 16   KTVLITGVTRGIGRALALEFAKHGHLIIGCGRDKTNLDSLQLQLSNASPQSHLLFIADVK 75
            KTVLITGV++G+GRAL+LE AK GH +IGC R +  L +LQ +LS  SP++HLL  ADVK
Sbjct: 1236 KTVLITGVSKGLGRALSLEMAKRGHTVIGCARTQEKLTALQSELS--SPENHLLLTADVK 1295

Query: 76   SDDSVRQMAHTVRDKLGSLDII 98
            SD SV++MAHT+ +K G  DII
Sbjct: 1296 SDSSVKEMAHTIMEKKGVPDII 1315

BLAST of CmoCh04G020390 vs. TrEMBL
Match: A0A078G6P9_BRANA (BnaC08g14160D protein OS=Brassica napus GN=BnaC08g14160D PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.9e-18
Identity = 49/82 (59.76%), Postives = 63/82 (76.83%), Query Frame = 1

Query: 16   KTVLITGVTRGIGRALALEFAKHGHLIIGCGRDKTNLDSLQLQLSNASPQSHLLFIADVK 75
            KTVLITGV++G+GRAL+LE AK GH +IGC R +    +LQ +LS  SP++HLL  ADVK
Sbjct: 1203 KTVLITGVSKGLGRALSLEMAKRGHTVIGCARTQEKFTALQSELS--SPENHLLLTADVK 1262

Query: 76   SDDSVRQMAHTVRDKLGSLDII 98
            SD SV++MAHT+ +K G  DII
Sbjct: 1263 SDSSVKEMAHTIMEKKGVPDII 1282

BLAST of CmoCh04G020390 vs. TrEMBL
Match: M4DPK6_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.0e-18
Identity = 49/82 (59.76%), Postives = 63/82 (76.83%), Query Frame = 1

Query: 16 KTVLITGVTRGIGRALALEFAKHGHLIIGCGRDKTNLDSLQLQLSNASPQSHLLFIADVK 75
          K VLITGV++G+GRAL+LE AK GH +IGC R +  L +LQ +LS  SP++HLL  ADVK
Sbjct: 18 KVVLITGVSKGLGRALSLEMAKRGHTVIGCARTQEKLTALQSELS--SPENHLLLTADVK 77

Query: 76 SDDSVRQMAHTVRDKLGSLDII 98
          SD SV++MAHT+ +K G  DII
Sbjct: 78 SDSSVKEMAHTIMEKKGVPDII 97

BLAST of CmoCh04G020390 vs. TrEMBL
Match: A0A078G653_BRANA (BnaA08g25840D protein OS=Brassica napus GN=BnaA08g25840D PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.0e-18
Identity = 49/82 (59.76%), Postives = 63/82 (76.83%), Query Frame = 1

Query: 16 KTVLITGVTRGIGRALALEFAKHGHLIIGCGRDKTNLDSLQLQLSNASPQSHLLFIADVK 75
          K VLITGV++G+GRAL+LE AK GH +IGC R +  L +LQ +LS  SP++HLL  ADVK
Sbjct: 18 KVVLITGVSKGLGRALSLEMAKRGHTVIGCARTQEKLTALQSELS--SPENHLLLTADVK 77

Query: 76 SDDSVRQMAHTVRDKLGSLDII 98
          SD SV++MAHT+ +K G  DII
Sbjct: 78 SDSSVKEMAHTIMEKKGVPDII 97

BLAST of CmoCh04G020390 vs. TAIR10
Match: AT1G10310.1 (AT1G10310.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 93.6 bits (231), Expect = 8.2e-20
Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = 1

Query: 16 KTVLITGVTRGIGRALALEFAKHGHLIIGCGRDKTNLDSLQLQLSNASPQSHLLFIADVK 75
          +TVLITGV++G+GRALALE AK GH +IGC R +  L +LQ +LS+++  +HLL  ADVK
Sbjct: 18 RTVLITGVSKGLGRALALELAKRGHTVIGCARSQEKLTALQSELSSST--NHLLLTADVK 77

Query: 76 SDDSVRQMAHTVRDKLGSLDII 98
          S+ SV +MAHT+ +K G  DII
Sbjct: 78 SNSSVEEMAHTIVEKKGVPDII 97

BLAST of CmoCh04G020390 vs. NCBI nr
Match: gi|778697976|ref|XP_004149629.2| (PREDICTED: NADPH-dependent pterin aldehyde reductase-like isoform X1 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 1.6e-25
Identity = 59/88 (67.05%), Postives = 75/88 (85.23%), Query Frame = 1

Query: 10  LQQETKKTVLITGVTRGIGRALALEFAKHGHLIIGCGRDKTNLDSLQLQLSNASPQSHLL 69
           ++ ET K ++I+GV+RG+GRALALE AK GH IIGC RDK  LDSLQLQLSNASP++HLL
Sbjct: 32  MEAETTKVIVISGVSRGLGRALALELAKLGHTIIGCSRDKIKLDSLQLQLSNASPRNHLL 91

Query: 70  FIADVKSDDSVRQMAHTVRDKLGSLDII 98
           F  DVKS++S+R+MA TV++K GS+DII
Sbjct: 92  FNFDVKSNESIREMAQTVKEKFGSVDII 119

BLAST of CmoCh04G020390 vs. NCBI nr
Match: gi|700194398|gb|KGN49575.1| (hypothetical protein Csa_5G011650 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 1.6e-25
Identity = 59/88 (67.05%), Postives = 75/88 (85.23%), Query Frame = 1

Query: 10  LQQETKKTVLITGVTRGIGRALALEFAKHGHLIIGCGRDKTNLDSLQLQLSNASPQSHLL 69
           ++ ET K ++I+GV+RG+GRALALE AK GH IIGC RDK  LDSLQLQLSNASP++HLL
Sbjct: 32  MEAETTKVIVISGVSRGLGRALALELAKLGHTIIGCSRDKIKLDSLQLQLSNASPRNHLL 91

Query: 70  FIADVKSDDSVRQMAHTVRDKLGSLDII 98
           F  DVKS++S+R+MA TV++K GS+DII
Sbjct: 92  FNFDVKSNESIREMAQTVKEKFGSVDII 119

BLAST of CmoCh04G020390 vs. NCBI nr
Match: gi|778697979|ref|XP_011654452.1| (PREDICTED: NADPH-dependent pterin aldehyde reductase-like isoform X2 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-23
Identity = 58/88 (65.91%), Postives = 74/88 (84.09%), Query Frame = 1

Query: 10  LQQETKKTVLITGVTRGIGRALALEFAKHGHLIIGCGRDKTNLDSLQLQLSNASPQSHLL 69
           ++ ET K ++I+GV+RG+GRALALE AK GH IIGC RDK  LDSLQLQLSNASP++HLL
Sbjct: 32  MEAETTKVIVISGVSRGLGRALALELAKLGHTIIGCSRDKIKLDSLQLQLSNASPRNHLL 91

Query: 70  FIADVKSDDSVRQMAHTVRDKLGSLDII 98
           F  D KS++S+R+MA TV++K GS+DII
Sbjct: 92  FNFD-KSNESIREMAQTVKEKFGSVDII 118

BLAST of CmoCh04G020390 vs. NCBI nr
Match: gi|922553675|ref|XP_013604856.1| (PREDICTED: NADPH-dependent pterin aldehyde reductase [Brassica oleracea var. oleracea])

HSP 1 Score: 100.5 bits (249), Expect = 1.9e-18
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 1

Query: 16 KTVLITGVTRGIGRALALEFAKHGHLIIGCGRDKTNLDSLQLQLSNASPQSHLLFIADVK 75
          KTVLITGV++G+GRAL+LE AK GH +IGC R +  L +LQ +LS  SP++HLL  ADVK
Sbjct: 18 KTVLITGVSKGLGRALSLEMAKRGHTVIGCARTQEKLTALQSELS--SPENHLLLTADVK 77

Query: 76 SDDSVRQMAHTVRDKLGSLDII 98
          SD SV++MAHT+ +K G  DII
Sbjct: 78 SDSSVKEMAHTIMEKKGVPDII 97

BLAST of CmoCh04G020390 vs. NCBI nr
Match: gi|674912508|emb|CDY20642.1| (BnaC08g14160D [Brassica napus])

HSP 1 Score: 99.0 bits (245), Expect = 5.5e-18
Identity = 49/82 (59.76%), Postives = 63/82 (76.83%), Query Frame = 1

Query: 16   KTVLITGVTRGIGRALALEFAKHGHLIIGCGRDKTNLDSLQLQLSNASPQSHLLFIADVK 75
            KTVLITGV++G+GRAL+LE AK GH +IGC R +    +LQ +LS  SP++HLL  ADVK
Sbjct: 1203 KTVLITGVSKGLGRALSLEMAKRGHTVIGCARTQEKFTALQSELS--SPENHLLLTADVK 1262

Query: 76   SDDSVRQMAHTVRDKLGSLDII 98
            SD SV++MAHT+ +K G  DII
Sbjct: 1263 SDSSVKEMAHTIMEKKGVPDII 1282

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PTALR_ARATH1.5e-1857.32NADPH-dependent pterin aldehyde reductase OS=Arabidopsis thaliana GN=At1g10310 P... [more]
DHRS3_MOUSE2.6e-0738.89Short-chain dehydrogenase/reductase 3 OS=Mus musculus GN=Dhrs3 PE=1 SV=2[more]
DHRS3_HUMAN1.3e-0637.78Short-chain dehydrogenase/reductase 3 OS=Homo sapiens GN=DHRS3 PE=1 SV=2[more]
DHRS3_BOVIN1.3e-0637.78Short-chain dehydrogenase/reductase 3 OS=Bos taurus GN=DHRS3 PE=2 SV=1[more]
DNRU_STRS52.2e-0634.15Putative daunorubicin C-13 ketoreductase DnrU OS=Streptomyces sp. (strain C5) PE... [more]
Match NameE-valueIdentityDescription
A0A0A0KIN8_CUCSA1.1e-2567.05Uncharacterized protein OS=Cucumis sativus GN=Csa_5G011650 PE=3 SV=1[more]
A0A0D3DNW4_BRAOL1.3e-1860.98Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A0A078G6P9_BRANA3.9e-1859.76BnaC08g14160D protein OS=Brassica napus GN=BnaC08g14160D PE=4 SV=1[more]
M4DPK6_BRARP5.0e-1859.76Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1[more]
A0A078G653_BRANA5.0e-1859.76BnaA08g25840D protein OS=Brassica napus GN=BnaA08g25840D PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT1G10310.18.2e-2057.32 NAD(P)-binding Rossmann-fold superfamily protein[more]
Match NameE-valueIdentityDescription
gi|778697976|ref|XP_004149629.2|1.6e-2567.05PREDICTED: NADPH-dependent pterin aldehyde reductase-like isoform X1 [Cucumis sa... [more]
gi|700194398|gb|KGN49575.1|1.6e-2567.05hypothetical protein Csa_5G011650 [Cucumis sativus][more]
gi|778697979|ref|XP_011654452.1|1.2e-2365.91PREDICTED: NADPH-dependent pterin aldehyde reductase-like isoform X2 [Cucumis sa... [more]
gi|922553675|ref|XP_013604856.1|1.9e-1860.98PREDICTED: NADPH-dependent pterin aldehyde reductase [Brassica oleracea var. ole... [more]
gi|674912508|emb|CDY20642.1|5.5e-1859.76BnaC08g14160D [Brassica napus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR016040NAD(P)-bd_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0044424 intracellular part
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016491 oxidoreductase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G020390.1CmoCh04G020390.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002347Short-chain dehydrogenase/reductase SDRPANTHERPTHR24322FAMILY NOT NAMEDcoord: 20..97
score: 3.6
IPR002347Short-chain dehydrogenase/reductase SDRPFAMPF00106adh_shortcoord: 16..97
score: 4.9
IPR016040NAD(P)-binding domainGENE3DG3DSA:3.40.50.720coord: 9..97
score: 8.6
IPR016040NAD(P)-binding domainunknownSSF51735NAD(P)-binding Rossmann-fold domainscoord: 14..97
score: 2.7
NoneNo IPR availablePANTHERPTHR24322:SF500SUBFAMILY NOT NAMEDcoord: 20..97
score: 3.6

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G020390Cp4.1LG01g16880Cucurbita pepo (Zucchini)cmocpeB680
CmoCh04G020390MELO3C026450.2Melon (DHL92) v3.6.1cmomedB746
CmoCh04G020390CsaV3_5G013920Cucumber (Chinese Long) v3cmocucB0865
CmoCh04G020390Cla97C11G206530Watermelon (97103) v2cmowmbB712
The following gene(s) are paralogous to this gene:

None