CmoCh04G015330 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G015330
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 7847937 .. 7848365 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTACAGTGGATCCTCTTACCTTGCCACGACTTTGCATGCTGCAGCGGTTCTGCTCGAGATTGACTGTGGCTGGGATTGGTTTATCACTTTGAGTGTGATGGATTATGCCAATTGGTTGAATCTCGATTGTTCTGCATACTTTTCTGGTTAATGTGCATCTATGTGTTTTAGATTGTTCTTTACTGGATCATAATATTGGGCTTTTGCAGTGAATTTATTGTCGTTTGTGATCTTCCAAATATCACCCGACGTTGGTGATCTATCGTGGCCTGATATGTGGATGAAGTTGTCCTGATTGATTTTTAGTATCTTGTCCTGATTGCATATGTCCAGTTGTAACTAAGATTTAAGCTCTGGTGCTAGAGGTTACTGTGTCTGTTTTCCAGGCTTGAATTATGACCCTGTGAAGGAGGGATTAGCTTAG

mRNA sequence

ATGACTTACAGTGGATCCTCTTACCTTGCCACGACTTTGCATGCTGCAGCGGTTCTGCTCGAGATTGACTGTGGCTGGGATTGGTTTATCACTTTGAGTGTGATGGATTATGCCAATTGGTTGAATCTCGATTGTTCTGCATACTTTTCTGATTTAAGCTCTGGTGCTAGAGGTTACTGTGTCTGTTTTCCAGGCTTGAATTATGACCCTGTGAAGGAGGGATTAGCTTAG

Coding sequence (CDS)

ATGACTTACAGTGGATCCTCTTACCTTGCCACGACTTTGCATGCTGCAGCGGTTCTGCTCGAGATTGACTGTGGCTGGGATTGGTTTATCACTTTGAGTGTGATGGATTATGCCAATTGGTTGAATCTCGATTGTTCTGCATACTTTTCTGATTTAAGCTCTGGTGCTAGAGGTTACTGTGTCTGTTTTCCAGGCTTGAATTATGACCCTGTGAAGGAGGGATTAGCTTAG

Homology

[Close]

BLAST of CmoCh04G015330 vs. TrEMBL
Match: A0A0A0KRB3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611740 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.0e-09
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 1


Query: 1   MTYSGSSYLATTLHAAAVLLEIDCGWDWFITLSVMDY 38
           MTYSGSSY+A TLHAAA+LL+ID GWDWFITLS  DY
Sbjct: 119 MTYSGSSYIAATLHAAAILLKIDSGWDWFITLSAKDY 155

[Close]

BLAST of CmoCh04G015330 vs. TrEMBL
Match: M5XRI5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006761mg PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-07
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 1


Query: 1   MTYSGSSYLATTLHAAAVLLEIDCGWDWFITLSVMDYANWLNLDCSAYFSDL 53
           +TY GSS +ATTL AAA+LL++D GWDWF+TLS MDY      D S  FS +
Sbjct: 119 ITYMGSSNIATTLRAAAILLKVDSGWDWFVTLSAMDYPLITQDDLSHVFSSV 170

[Close]

BLAST of CmoCh04G015330 vs. TrEMBL
Match: A0A0D2PTZ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G162900 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-07
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1


Query: 2   TYSGSSYLATTLHAAAVLLEIDCGWDWFITLSVMDYANWLNLDCSAYFSDL 53
           +Y GSSY+A+TLHAAA+L+++D GWDWFI LS +DY      D S  FS +
Sbjct: 120 SYMGSSYIASTLHAAAILMKVDPGWDWFIALSALDYPLLTQDDLSHVFSSV 170

[Close]

BLAST of CmoCh04G015330 vs. TrEMBL
Match: E5GCM4_CUCME (Acetylglucosaminyltransferase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.0e-07
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 1


Query: 1   MTYSGSSYLATTLHAAAVLLEIDCGWDWFITLSVMDYANWLNLDCSAYFSDLS 54
           ++Y GSS +AT LHAAA+LL+I+ GWDWFITLS  DY      D S  FS +S
Sbjct: 119 ISYMGSSNIATILHAAAILLKIESGWDWFITLSARDYPLISQDDLSHVFSSVS 171

[Close]

BLAST of CmoCh04G015330 vs. TrEMBL
Match: A0A059BES1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02200 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.0e-07
Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 1


Query: 2   TYSGSSYLATTLHAAAVLLEIDCGWDWFITLSVMDYANWLNLDCSAYFSDLS 54
           TY GSS +A TL AAA+LL++D GWDWFITLS  DY      D S  FS +S
Sbjct: 120 TYMGSSNIAATLRAAAILLKLDSGWDWFITLSAFDYPLITQDDLSHVFSSVS 171

[Close]

BLAST of CmoCh04G015330 vs. TAIR10
Match: AT3G15350.1 (AT3G15350.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 48.9 bits (115), Expect = 1.6e-06
Identity = 21/37 (56.76%), Postives = 26/37 (70.27%), Query Frame = 1


Query: 1   MTYSGSSYLATTLHAAAVLLEIDCGWDWFITLSVMDY 38
           +TY G + +A TLHA AVLL+ +  WDWFI LS  DY
Sbjct: 150 VTYKGPTMVANTLHACAVLLKRNANWDWFINLSASDY 186

[Close]

BLAST of CmoCh04G015330 vs. TAIR10
Match: AT3G03690.1 (AT3G03690.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 48.9 bits (115), Expect = 1.6e-06
Identity = 27/52 (51.92%), Postives = 31/52 (59.62%), Query Frame = 1


Query: 1   MTYSGSSYLATTLHAAAVLLEIDCGWDWFITLSVMDYANWLNLDCSAYFSDL 53
           +TY G + LATTLHA A+LL   C WDWFI LS  DY      D    FS+L
Sbjct: 123 VTYRGPTMLATTLHAMALLLRC-CRWDWFINLSASDYPLVTQDDLIYAFSEL 173

[Close]

BLAST of CmoCh04G015330 vs. TAIR10
Match: AT5G39990.1 (AT5G39990.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 47.8 bits (112), Expect = 3.6e-06
Identity = 25/52 (48.08%), Postives = 29/52 (55.77%), Query Frame = 1


Query: 1   MTYSGSSYLATTLHAAAVLLEIDCGWDWFITLSVMDYANWLNLDCSAYFSDL 53
           +TY G + +A TLHAAA+LL     WDWFI LS  DY      D    FS L
Sbjct: 170 VTYRGPTMVANTLHAAAILLREGADWDWFINLSSSDYPLVTQDDLLHIFSHL 221

[Close]

BLAST of CmoCh04G015330 vs. TAIR10
Match: AT1G71070.1 (AT1G71070.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 47.4 bits (111), Expect = 4.7e-06
Identity = 21/53 (39.62%), Postives = 36/53 (67.92%), Query Frame = 1


Query: 1   MTYSGSSYLATTLHAAAVLLEIDCGWDWFITLSVMDYANWLNLDCSAYFSDLS 54
           ++ +G+S +A+TLHA ++LL++D  W+WFI LS +DY      D S  F+ ++
Sbjct: 118 LSENGASKIASTLHAVSILLKLDPTWNWFIELSALDYPLITQDDLSHVFASVN 170

[Close]

BLAST of CmoCh04G015330 vs. TAIR10
Match: AT5G15050.1 (AT5G15050.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 47.0 bits (110), Expect = 6.1e-06
Identity = 21/37 (56.76%), Postives = 25/37 (67.57%), Query Frame = 1


Query: 1   MTYSGSSYLATTLHAAAVLLEIDCGWDWFITLSVMDY 38
           +TY G + +A TLHAAA+LL     WDWFI LS  DY
Sbjct: 157 VTYRGPTMVANTLHAAAILLREGGDWDWFINLSASDY 193

[Close]

BLAST of CmoCh04G015330 vs. NCBI nr
Match: gi|659091731|ref|XP_008446701.1| (PREDICTED: xylosyltransferase 1 [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 7.2e-09
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 1


Query: 1   MTYSGSSYLATTLHAAAVLLEIDCGWDWFITLSVMDY 38
           MTYSGSSY+A TLHAAA+LL+ID GWDWFITLS  DY
Sbjct: 119 MTYSGSSYIAATLHAAAILLKIDSGWDWFITLSAKDY 155

[Close]

BLAST of CmoCh04G015330 vs. NCBI nr
Match: gi|449434548|ref|XP_004135058.1| (PREDICTED: xylosyltransferase 1 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 7.2e-09
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 1


Query: 1   MTYSGSSYLATTLHAAAVLLEIDCGWDWFITLSVMDY 38
           MTYSGSSY+A TLHAAA+LL+ID GWDWFITLS  DY
Sbjct: 119 MTYSGSSYIAATLHAAAILLKIDSGWDWFITLSAKDY 155

[Close]

BLAST of CmoCh04G015330 vs. NCBI nr
Match: gi|657993864|ref|XP_008389227.1| (PREDICTED: xylosyltransferase 1 [Malus domestica])

HSP 1 Score: 64.7 bits (156), Expect = 8.0e-08
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 1


Query: 2   TYSGSSYLATTLHAAAVLLEIDCGWDWFITLSVMDYANWLNLDCSAYFSDL 53
           TY GSS +ATTLHAAA+ L++D GWDWF+TLS MDY      D S  FS +
Sbjct: 120 TYMGSSNIATTLHAAAIFLKVDSGWDWFVTLSAMDYPLITQDDLSHVFSSV 170

[Close]

BLAST of CmoCh04G015330 vs. NCBI nr
Match: gi|596163985|ref|XP_007222964.1| (hypothetical protein PRUPE_ppa006761mg [Prunus persica])

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-07
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 1


Query: 1   MTYSGSSYLATTLHAAAVLLEIDCGWDWFITLSVMDYANWLNLDCSAYFSDL 53
           +TY GSS +ATTL AAA+LL++D GWDWF+TLS MDY      D S  FS +
Sbjct: 119 ITYMGSSNIATTLRAAAILLKVDSGWDWFVTLSAMDYPLITQDDLSHVFSSV 170

[Close]

BLAST of CmoCh04G015330 vs. NCBI nr
Match: gi|1009155127|ref|XP_015895544.1| (PREDICTED: beta-glucuronosyltransferase GlcAT14A [Ziziphus jujuba])

HSP 1 Score: 62.8 bits (151), Expect = 3.0e-07
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 1


Query: 1   MTYSGSSYLATTLHAAAVLLEIDCGWDWFITLSVMDYANWLNLDCSAYFSDL 53
           +TY GS+ +ATTL AAA+LL +D GWDWFITLS MDY      D S  FS +
Sbjct: 119 LTYMGSTNIATTLRAAAILLRLDSGWDWFITLSAMDYPLITQDDLSHVFSSI 170

The following BLAST results are available for this feature:

BLAST of CmoCh04G015330 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G015330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRB3_CUCSA	5.0e-09	81.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611740 PE=4 SV=1	[more]
M5XRI5_PRUPE	1.2e-07	57.69	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006761mg PE=4 SV=1	[more]
A0A0D2PTZ0_GOSRA	2.1e-07	54.90	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G162900 PE=4 SV=1	[more]
E5GCM4_CUCME	8.0e-07	56.60	Acetylglucosaminyltransferase OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A059BES1_EUCGR	8.0e-07	57.69	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02200 PE=4 SV=1	[more]

BLAST of CmoCh04G015330 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15350.1	1.6e-06	56.76	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family p...	[more]
AT3G03690.1	1.6e-06	51.92	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family p...	[more]
AT5G39990.1	3.6e-06	48.08	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family p...	[more]
AT1G71070.1	4.7e-06	39.62	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family p...	[more]
AT5G15050.1	6.1e-06	56.76	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family p...	[more]

BLAST of CmoCh04G015330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091731\|ref\|XP_008446701.1\|	7.2e-09	81.08	PREDICTED: xylosyltransferase 1 [Cucumis melo]	[more]
gi\|449434548\|ref\|XP_004135058.1\|	7.2e-09	81.08	PREDICTED: xylosyltransferase 1 [Cucumis sativus]	[more]
gi\|657993864\|ref\|XP_008389227.1\|	8.0e-08	58.82	PREDICTED: xylosyltransferase 1 [Malus domestica]	[more]
gi\|596163985\|ref\|XP_007222964.1\|	1.8e-07	57.69	hypothetical protein PRUPE_ppa006761mg [Prunus persica]	[more]
gi\|1009155127\|ref\|XP_015895544.1\|	3.0e-07	57.69	PREDICTED: beta-glucuronosyltransferase GlcAT14A [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003406	Glyco_trans_14

Vocabulary: **Molecular Function**
Term	Definition
GO:0008375	acetylglucosaminyltransferase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016020	membrane
molecular_function	GO:0008375	acetylglucosaminyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G015330.1	CmoCh04G015330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003406	Glycosyl transferase, family 14	PFAM	PF02485	Branch	coord: 2..52 score: 2.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G015330	CsaV3_5G034950	Cucumber (Chinese Long) v3	cmocucB0874
CmoCh04G015330	Carg01879	Silver-seed gourd	carcmoB1138

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G015330	Silver-seed gourd	carcmoB1412
CmoCh04G015330	Watermelon (97103) v2	cmowmbB729
CmoCh04G015330	Wax gourd	cmowgoB0897
CmoCh04G015330	Cucurbita moschata (Rifu)	cmocmoB336
CmoCh04G015330	Cucumber (Gy14) v1	cgycmoB0793
CmoCh04G015330	Cucurbita maxima (Rimu)	cmacmoB312
CmoCh04G015330	Cucurbita maxima (Rimu)	cmacmoB420
CmoCh04G015330	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G015330	Wild cucumber (PI 183967)	cmocpiB745
CmoCh04G015330	Cucumber (Chinese Long) v2	cmocuB738
CmoCh04G015330	Melon (DHL92) v3.5.1	cmomeB631
CmoCh04G015330	Watermelon (Charleston Gray)	cmowcgB654
CmoCh04G015330	Watermelon (97103) v1	cmowmB693
CmoCh04G015330	Cucurbita pepo (Zucchini)	cmocpeB651
CmoCh04G015330	Cucurbita pepo (Zucchini)	cmocpeB659
CmoCh04G015330	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G015330	Bottle gourd (USVL1VR-Ls)	cmolsiB660
CmoCh04G015330	Cucumber (Gy14) v2	cgybcmoB650
CmoCh04G015330	Melon (DHL92) v3.6.1	cmomedB720