CmoCh04G014060 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G014060
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein
Location	Cmo_Chr04 : 7175762 .. 7178283 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGATGACGACTTCTCTGACTACAAGCTCTGCGGTTTCTTGTGTGTGGTTCTTGCCGTTCCTTCGCGGCAGTCCGAACTGGTGAATGCTCTATGTCCAGGTACGCGTTGTTATGTCTCTGTTGAGAGTTCTGATGTTTGTTTTACTTCCGAATATGGCGTCGTGCTTACTCCGATTGAAGCAAACCCCAAACCGCTCTCCAAGGCCGGTGTTTCGCCTCAAGATTCTGAGCAATGTGGGGGGACGGTAGGTGGAGAGGGAACTAGTACGGTGGAGAATGGTGATTTAACTCTGAAGCTCAAGATGTCTGCGAGAGGACGTAGGACCTCGGGGAAAAAGAGGACGAATAGGATGGGGCTGGTTCATGGCAGCATGAGCGTTGTGCATCAAATTCACGCTCTGGTAGTGCACAAGTGCTTGAAGATTGACGCGCAGGTGATTTTCGTTGACATTGGCGTTGATGAGGAGGCCCGAGCTGTGTTGTTGGTTGATGTTCATCTTCCCGTTGAATTGTGGTCCGGTTGGCAGTTTCCTAGATCCAAGACGGTTGCTGGTGCGCTATTTAGGCATTTGAGGTGATGGATTACTTTAAGTTCATTCGATTTTTTTTTTCGGTTGAGTTTGAATATGGGTTCGTACTTTTCAGTGACTTTCATGAACATATTTCATGAGTCAATGTTGAAGAGGAACTCGAGTGGCTAGTGGTTATGTTTCTTTTTTGAATAATCAGATTGACGCTCAAAAAGGCTATCGTTTGTCCAACCAAAGAACTTGAGTATGTTAAAACTGTTGGATGATGAAAGTCCCACCTCGACTAATTTAAGAAATGATCATGAGTTTATAAACAAAGAATACTCTCTCCATTGGGATGAGGCCTTTTGGGAAAGCCCAAATCAAAGTCACGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCATCTAACATGGTATCAGAACCATGCCCTAAACTTAGTCGTGCCAATAGATTGGTAAATCCTCAAATGTCGAACAAAGGAGTCAAGCCTCCTCAAAGGTACGAAGGCAGTAAAAAATGACTAAGACTCCAAAGGAGTCGAGCCTTGATGAAGGGGAGGCGTGCTTTGTTCGAGGGGAGGTGTTGGATGATGAAAGTCCCAAATTGGCTAATTTAGGGAATGATCATGGGTTTATAAACAAAGAATACTCTCTCCATTGGGATGGGGTCTTTTGGGGAAAGTCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCATCTAACAAAACTACCAATCCAGGTGTATGACATTATTTATCTTCCAATTAAGGAACCTCCATACATTATGTAGCTTCTTGAAAATGTTTAGAGAACTGATATAAGTTGTAACTCCCTCCATAAAGCCATATAATCCCTTCATAAAATTTATAGACAGCTCATGTTGGTGAAAAAAGTAGAGTCTTCATTCCCTTCATCTAATCTATCTAATCCTGGATTCTTGCATCGTTATTGGTTATCTTGAGCATTCATCTCCATCGACTCCAGCTTCACAAACCTTGTTTGCTCAAAAACAATTTTCTTCTTCGAATTTGTGCATATGGACATTAATCTTCTTCATCAATGGCTCCTTTCTATGGACACCCGAAGTAACAATTCATTTCACTCTCTGATAATATTCTTAGTAGCCTTTATCTGGTTGAGAAATCAGACTTTTTTAATCCTTCCCAGAGGTACTTAAAAGGAGTGGTATTGTTGTGAAAAATTCTTAAATTTAAAGAAGATAGGACCTGTAGATATCGCCCTAGTTCGCATTCTTAAAAGGGAAGGAATGAAAGGATTTGGAGACAAACTTGAAAGCTCTTGATGTTTTGGTCCCTTATTCGTTTATTAATTTCTAATAATCGTTTTGGCAACTTATTTATTTAGAGACCAAGCAGTGAAAAAAAAATGTTTTTTTATTAGTTTTTGCAAGAATCAAGATTGGTATAAGTTGTAATCTATAGTCTATTCATTCTTATTTGTTTATTTTTTTTCCTCTGTTAAGTAGGATCTTCGACTCCTACTTCTGTTAGCTTTTTGTAATGGATTTTTGTTTCATACAAATGTTGTGAGTTTATTATTGTATGTATTTTCAGTTATAAATGGCCTTTTTAATGAATTTTTGTTTTAGATGAAATGTTTTAAGTTTATTATCCTATATACTTTCAGTTGTGAATGGCAAGAAAGAAGCTCTCTACTTGTTGGAAAAGATCATTCTCAAGTTGCAGATATGGTTAGGAAGAGCGTGTGGAATCCCGCAGAATGTCATGTCCACAATTGCAAATTGCACAATAGTCCTGGAGGTTCTTCAAATAGAAGGCTCTTTGAACTTCATGAAATATTTAGAAGCTTACCGAGTATTCTTAGGTCATGCAAACCTGAATATACGAGAATACAACCAGAGGATGATTATTCTCAATCAGGCATATGGGACATATCAGATGACGTTCTGA

mRNA sequence

ATGGACGATGACGACTTCTCTGACTACAAGCTCTGCGGTTTCTTGTGTGTGGTTCTTGCCGTTCCTTCGCGGCAGTCCGAACTGGTGAATGCTCTATGTCCAGGTACGCGTTGTTATGTCTCTGTTGAGAGTTCTGATGTTTGTTTTACTTCCGAATATGGCGTCGTGCTTACTCCGATTGAAGCAAACCCCAAACCGCTCTCCAAGGCCGGTGTTTCGCCTCAAGATTCTGAGCAATGTGGGGGGACGGTAGGTGGAGAGGGAACTAGTACGGTGGAGAATGGTGATTTAACTCTGAAGCTCAAGATGTCTGCGAGAGGACGTAGGACCTCGGGGAAAAAGAGGACGAATAGGATGGGGCTGGTTCATGGCAGCATGAGCGTTGTGCATCAAATTCACGCTCTGGTAGTGCACAAGTGCTTGAAGATTGACGCGCAGGTGATTTTCGTTGACATTGGCGTTGATGAGGAGGCCCGAGCTGTGTTGTTGGTTGATGTTCATCTTCCCGTTGAATTGTGGTCCGGTTGGCAGTTTCCTAGATCCAAGACGGTTGCTGTTGTGAATGGCAAGAAAGAAGCTCTCTACTTGTTGGAAAAGATCATTCTCAAGTTGCAGATATGGTTAGGAAGAGCGTGTGGAATCCCGCAGAATGTCATGTCCACAATTGCAAATTGCACAATAGTCCTGGAGGTTCTTCAAATAGAAGGCTCTTTGAACTTCATGAAATATTTAGAAGCTTACCGAGTATTCTTAGGTCATGCAAACCTGAATATACGAGAATACAACCAGAGGATGATTATTCTCAATCAGGCATATGGGACATATCAGATGACGTTCTGA

Coding sequence (CDS)

ATGGACGATGACGACTTCTCTGACTACAAGCTCTGCGGTTTCTTGTGTGTGGTTCTTGCCGTTCCTTCGCGGCAGTCCGAACTGGTGAATGCTCTATGTCCAGGTACGCGTTGTTATGTCTCTGTTGAGAGTTCTGATGTTTGTTTTACTTCCGAATATGGCGTCGTGCTTACTCCGATTGAAGCAAACCCCAAACCGCTCTCCAAGGCCGGTGTTTCGCCTCAAGATTCTGAGCAATGTGGGGGGACGGTAGGTGGAGAGGGAACTAGTACGGTGGAGAATGGTGATTTAACTCTGAAGCTCAAGATGTCTGCGAGAGGACGTAGGACCTCGGGGAAAAAGAGGACGAATAGGATGGGGCTGGTTCATGGCAGCATGAGCGTTGTGCATCAAATTCACGCTCTGGTAGTGCACAAGTGCTTGAAGATTGACGCGCAGGTGATTTTCGTTGACATTGGCGTTGATGAGGAGGCCCGAGCTGTGTTGTTGGTTGATGTTCATCTTCCCGTTGAATTGTGGTCCGGTTGGCAGTTTCCTAGATCCAAGACGGTTGCTGTTGTGAATGGCAAGAAAGAAGCTCTCTACTTGTTGGAAAAGATCATTCTCAAGTTGCAGATATGGTTAGGAAGAGCGTGTGGAATCCCGCAGAATGTCATGTCCACAATTGCAAATTGCACAATAGTCCTGGAGGTTCTTCAAATAGAAGGCTCTTTGAACTTCATGAAATATTTAGAAGCTTACCGAGTATTCTTAGGTCATGCAAACCTGAATATACGAGAATACAACCAGAGGATGATTATTCTCAATCAGGCATATGGGACATATCAGATGACGTTCTGA

Homology

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BLAST of CmoCh04G014060 vs. Swiss-Prot
Match: FB304_ARATH (F-box protein At3g54460 OS=Arabidopsis thaliana GN=At3g54460 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.0e-27
Identity = 76/196 (38.78%), Postives = 111/196 (56.63%), Query Frame = 1


Query: 8   DYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLT---PIEANP 67
           D+KLCGFLC VL+V S      + L  G+ C++  + S   F SE G++L+   PI    
Sbjct: 4   DHKLCGFLCTVLSVDSP-----DLLQSGSSCFIFNDGSVTGFKSENGLILSLTNPISNLQ 63

Query: 68  KPLSKAG---------------VSPQDSEQCGGTVGGEGTSTVENGDLTLKLKMSARGRR 127
             +S  G                +PQ   +C   V GE +   +      ++   ++ + 
Sbjct: 64  SLISSKGDHDVENSGTIEDGRLETPQKRRKC---VEGESSGKRKTPKSKRRVLSGSKEKT 123

Query: 128 TSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLP 186
             G+KR   +G+V+GS+SVV Q+HALV +KCLKI  +V+ VD G + E RAV+LVDV+LP
Sbjct: 124 VQGRKRVKSIGMVNGSISVVQQLHALVANKCLKIICRVVKVDKGENGEERAVVLVDVYLP 183

[Close]

BLAST of CmoCh04G014060 vs. TrEMBL
Match: A0A0A0KTQ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623770 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 4.6e-68
Identity = 136/180 (75.56%), Postives = 151/180 (83.89%), Query Frame = 1


Query: 6   FSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPK 65
           FSDYKLCGFLCVVLAVPS Q +L+N L PGTRCYVS ESSDVCFTS+ GV+L+PIE +PK
Sbjct: 7   FSDYKLCGFLCVVLAVPSPQFDLLNLLRPGTRCYVSTESSDVCFTSQNGVLLSPIEESPK 66

Query: 66  PLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLKLKMSARGRRTSGKKRTNRMGLVHGS 125
            L K GV PQDSEQC GTV GEG    E GD T K   SA G R+S KKRTNRMGLVHG+
Sbjct: 67  SLFKPGVLPQDSEQCRGTVNGEGIGAAEIGDFTPKRGASAGGSRSSRKKRTNRMGLVHGN 126

Query: 126 MSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA 185
           MSVV+QIHALVVHKC+KIDAQVIF+DI   +EARAVLLVDV+LPVELWSGWQFP+SKT+A
Sbjct: 127 MSVVYQIHALVVHKCMKIDAQVIFLDI---QEARAVLLVDVYLPVELWSGWQFPKSKTIA 183

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BLAST of CmoCh04G014060 vs. TrEMBL
Match: E5GCJ6_CUCME (Chromatin remodeling complex subunit (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.1e-66
Identity = 136/181 (75.14%), Postives = 149/181 (82.32%), Query Frame = 1


Query: 5   DFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANP 64
           DFSD+KLCGFL VVLAV S QSE +N L PGTRCYVS ESSDVCFTS+ GVVL+P+E NP
Sbjct: 6   DFSDFKLCGFLSVVLAVSSPQSEFLNLLRPGTRCYVSAESSDVCFTSQNGVVLSPLEENP 65

Query: 65  KPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLKLKMSARGRRTSGKKRTNRMGLVHG 124
           K LSK G  PQDSEQC G V GEG    E G LT K  +SA G R+S KKRTNRMGLVHG
Sbjct: 66  KSLSKPGALPQDSEQCRGAVNGEGIGAAEIGILTPKRGVSAGGSRSSRKKRTNRMGLVHG 125

Query: 125 SMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTV 184
           +MSVV+QIHALVVHKC+KIDAQV FVDI   +EARAVLLVDV+LPVELWSGWQFP+SKTV
Sbjct: 126 NMSVVYQIHALVVHKCMKIDAQVTFVDI---QEARAVLLVDVYLPVELWSGWQFPKSKTV 183

Query: 185 A 186
           A
Sbjct: 186 A 183

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BLAST of CmoCh04G014060 vs. TrEMBL
Match: A5BGE7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032626 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.7e-28
Identity = 83/184 (45.11%), Postives = 105/184 (57.07%), Query Frame = 1


Query: 2   DDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIE 61
           DDD   D+K CGFL  VLA+   Q+     L  GTRC++  + S+V F SE  V+L+P++
Sbjct: 4   DDDSIPDHKHCGFLSAVLAINPPQT-----LDSGTRCHIFGDGSEVGFRSENDVILSPVD 63

Query: 62  ANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLKLKMSARGRRTSGKKRTNRMGL 121
                 SKA  S  DS +C                              S +KR   +GL
Sbjct: 64  ------SKAKTSTGDSGEC------------------------------SRRKRKRGIGL 123

Query: 122 VHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRS 181
           VHGS+SVV QIHALVVHKC+KI A+V    + V  EARAV+LVDV+LP+ELWSGWQFPRS
Sbjct: 124 VHGSISVVRQIHALVVHKCVKIVARV----VRVCGEARAVVLVDVYLPIELWSGWQFPRS 142

Query: 182 KTVA 186
            + A
Sbjct: 184 ASTA 142

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BLAST of CmoCh04G014060 vs. TrEMBL
Match: M5XQS9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015535mg PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.0e-27
Identity = 85/185 (45.95%), Postives = 112/185 (60.54%), Query Frame = 1


Query: 2   DDDDFSDYKLCGFLCVVLAVPSRQSELVNALCP-GTRCYVSVESSDVCFTSEYGVVLTPI 61
           D   FSD+K CGFLC VL V S     +  + P GTR   S   + V FTS   VVL+PI
Sbjct: 6   DTVSFSDHKRCGFLCAVLTVTSPDHPDLRQILPFGTRFQFS--PTGVSFTSRNDVVLSPI 65

Query: 62  EANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLKLKMSARGRRTSGKKRTNRMG 121
           + NP           DSEQC      E +S+ E G    K K     ++   +KR+  +G
Sbjct: 66  DENPNADDSTN---NDSEQC------EASSSSELGK---KRKAPEVSKKIGMRKRS--IG 125

Query: 122 LVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPR 181
           LV+GS+SVVHQ+H+LV++KCL IDA+++ V+ G + E RAVLLVDV+L + L SGWQFPR
Sbjct: 126 LVNGSISVVHQLHSLVMNKCLMIDARLVRVEAGANGEVRAVLLVDVYLTIALLSGWQFPR 174

Query: 182 SKTVA 186
           S +VA
Sbjct: 186 SGSVA 174

[Close]

BLAST of CmoCh04G014060 vs. TrEMBL
Match: F6I5R7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g03330 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.0e-26
Identity = 81/184 (44.02%), Postives = 103/184 (55.98%), Query Frame = 1


Query: 2   DDDDFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIE 61
           DD     +K CGFL  VLA+   Q+     L  GTRC++  + S+V F SE  V+L+P++
Sbjct: 4   DDHSIPHHKHCGFLSAVLAINPPQT-----LDSGTRCHIFGDGSEVGFRSENDVILSPVD 63

Query: 62  ANPKPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLKLKMSARGRRTSGKKRTNRMGL 121
                 SKA  S  DS +C                              S +KR   +GL
Sbjct: 64  ------SKAKTSTGDSGEC------------------------------SRRKRKRGIGL 123

Query: 122 VHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRS 181
           VHGS+SVV QIHALVVHKC+KI A+V    + V  EARAV+LVDV+LP+ELWSGWQFPRS
Sbjct: 124 VHGSISVVRQIHALVVHKCVKIVARV----VRVCGEARAVVLVDVYLPIELWSGWQFPRS 142

Query: 182 KTVA 186
            + A
Sbjct: 184 ASTA 142

[Close]

BLAST of CmoCh04G014060 vs. TAIR10
Match: AT3G54460.1 (AT3G54460.1 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein)

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-28
Identity = 76/196 (38.78%), Postives = 111/196 (56.63%), Query Frame = 1


Query: 8   DYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLT---PIEANP 67
           D+KLCGFLC VL+V S      + L  G+ C++  + S   F SE G++L+   PI    
Sbjct: 4   DHKLCGFLCTVLSVDSP-----DLLQSGSSCFIFNDGSVTGFKSENGLILSLTNPISNLQ 63

Query: 68  KPLSKAG---------------VSPQDSEQCGGTVGGEGTSTVENGDLTLKLKMSARGRR 127
             +S  G                +PQ   +C   V GE +   +      ++   ++ + 
Sbjct: 64  SLISSKGDHDVENSGTIEDGRLETPQKRRKC---VEGESSGKRKTPKSKRRVLSGSKEKT 123

Query: 128 TSGKKRTNRMGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLP 186
             G+KR   +G+V+GS+SVV Q+HALV +KCLKI  +V+ VD G + E RAV+LVDV+LP
Sbjct: 124 VQGRKRVKSIGMVNGSISVVQQLHALVANKCLKIICRVVKVDKGENGEERAVVLVDVYLP 183

[Close]

BLAST of CmoCh04G014060 vs. NCBI nr
Match: gi|449449272|ref|XP_004142389.1| (PREDICTED: F-box protein At3g54460 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 6.6e-68
Identity = 136/180 (75.56%), Postives = 151/180 (83.89%), Query Frame = 1


Query: 6   FSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPK 65
           FSDYKLCGFLCVVLAVPS Q +L+N L PGTRCYVS ESSDVCFTS+ GV+L+PIE +PK
Sbjct: 7   FSDYKLCGFLCVVLAVPSPQFDLLNLLRPGTRCYVSTESSDVCFTSQNGVLLSPIEESPK 66

Query: 66  PLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLKLKMSARGRRTSGKKRTNRMGLVHGS 125
            L K GV PQDSEQC GTV GEG    E GD T K   SA G R+S KKRTNRMGLVHG+
Sbjct: 67  SLFKPGVLPQDSEQCRGTVNGEGIGAAEIGDFTPKRGASAGGSRSSRKKRTNRMGLVHGN 126

Query: 126 MSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTVA 185
           MSVV+QIHALVVHKC+KIDAQVIF+DI   +EARAVLLVDV+LPVELWSGWQFP+SKT+A
Sbjct: 127 MSVVYQIHALVVHKCMKIDAQVIFLDI---QEARAVLLVDVYLPVELWSGWQFPKSKTIA 183

[Close]

BLAST of CmoCh04G014060 vs. NCBI nr
Match: gi|307136385|gb|ADN34195.1| (chromatin remodeling complex subunit [Cucumis melo subsp. melo])

HSP 1 Score: 261.5 bits (667), Expect = 1.6e-66
Identity = 136/181 (75.14%), Postives = 149/181 (82.32%), Query Frame = 1


Query: 5   DFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANP 64
           DFSD+KLCGFL VVLAV S QSE +N L PGTRCYVS ESSDVCFTS+ GVVL+P+E NP
Sbjct: 6   DFSDFKLCGFLSVVLAVSSPQSEFLNLLRPGTRCYVSAESSDVCFTSQNGVVLSPLEENP 65

Query: 65  KPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLKLKMSARGRRTSGKKRTNRMGLVHG 124
           K LSK G  PQDSEQC G V GEG    E G LT K  +SA G R+S KKRTNRMGLVHG
Sbjct: 66  KSLSKPGALPQDSEQCRGAVNGEGIGAAEIGILTPKRGVSAGGSRSSRKKRTNRMGLVHG 125

Query: 125 SMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTV 184
           +MSVV+QIHALVVHKC+KIDAQV FVDI   +EARAVLLVDV+LPVELWSGWQFP+SKTV
Sbjct: 126 NMSVVYQIHALVVHKCMKIDAQVTFVDI---QEARAVLLVDVYLPVELWSGWQFPKSKTV 183

Query: 185 A 186
           A
Sbjct: 186 A 183

[Close]

BLAST of CmoCh04G014060 vs. NCBI nr
Match: gi|659092199|ref|XP_008446949.1| (PREDICTED: F-box protein At3g54460 [Cucumis melo])

HSP 1 Score: 261.5 bits (667), Expect = 1.6e-66
Identity = 136/181 (75.14%), Postives = 149/181 (82.32%), Query Frame = 1


Query: 5   DFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANP 64
           DFSD+KLCGFL VVLAV S QSE +N L PGTRCYVS ESSDVCFTS+ GVVL+P+E NP
Sbjct: 6   DFSDFKLCGFLSVVLAVSSPQSEFLNLLRPGTRCYVSAESSDVCFTSQNGVVLSPLEENP 65

Query: 65  KPLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLKLKMSARGRRTSGKKRTNRMGLVHG 124
           K LSK G  PQDSEQC G V GEG    E G LT K  +SA G R+S KKRTNRMGLVHG
Sbjct: 66  KSLSKPGALPQDSEQCRGAVNGEGIGAAEIGILTPKRGVSAGGSRSSRKKRTNRMGLVHG 125

Query: 125 SMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTV 184
           +MSVV+QIHALVVHKC+KIDAQV FVDI   +EARAVLLVDV+LPVELWSGWQFP+SKTV
Sbjct: 126 NMSVVYQIHALVVHKCMKIDAQVTFVDI---QEARAVLLVDVYLPVELWSGWQFPKSKTV 183

Query: 185 A 186
           A
Sbjct: 186 A 183

[Close]

BLAST of CmoCh04G014060 vs. NCBI nr
Match: gi|658057884|ref|XP_008364734.1| (PREDICTED: F-box protein At3g54460-like [Malus domestica])

HSP 1 Score: 143.3 bits (360), Expect = 6.5e-31
Identity = 93/189 (49.21%), Postives = 119/189 (62.96%), Query Frame = 1


Query: 1   MDDD--DFSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLT 60
           MDDD   FSD+KLCGFLC VL V S           GTR  +S   SDV FTS  GVVL+
Sbjct: 1   MDDDTSSFSDHKLCGFLCAVLTVTSSPDPRQTPPF-GTRFQIS--QSDVNFTSPNGVVLS 60

Query: 61  PIEANPKPLSKAGVSP-QDSEQCGGTVGGEGTSTVENGDLTLKLKMSARGRRTSGKKRTN 120
           P+++ P     A V P QDS+QC   V           +L  K +    G +  G +R+ 
Sbjct: 61  PVDSIPS----ADVIPVQDSKQCEVLVR----------ELGRKRRNPEAGLKNVGMRRSR 120

Query: 121 R-MGLVHGSMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGW 180
           R +GLVHGS+SVVHQ+HALVV+KCL IDA+++ V+ GV  E RAV+LVDV+LP+ L +GW
Sbjct: 121 RSIGLVHGSISVVHQLHALVVNKCLMIDARLVRVEAGVSGEVRAVVLVDVYLPIALLAGW 172

Query: 181 QFPRSKTVA 186
           QFPRS ++A
Sbjct: 181 QFPRSGSIA 172

[Close]

BLAST of CmoCh04G014060 vs. NCBI nr
Match: gi|694327267|ref|XP_009354510.1| (PREDICTED: F-box protein At3g54460-like, partial [Pyrus x bretschneideri])

HSP 1 Score: 141.4 bits (355), Expect = 2.5e-30
Identity = 84/181 (46.41%), Postives = 113/181 (62.43%), Query Frame = 1


Query: 6   FSDYKLCGFLCVVLAVPSRQSELVNALCPGTRCYVSVESSDVCFTSEYGVVLTPIEANPK 65
           FSD+KLCGFLC VL V S     V    P       +  SDV FTS+ G VL+PI+    
Sbjct: 8   FSDHKLCGFLCAVLTVTSSP---VRRQTPSFGTRFRISQSDVNFTSQNGFVLSPID---- 67

Query: 66  PLSKAGVSPQDSEQCGGTVGGEGTSTVENGDLTLKLKMSARGRRTSGKKRTNR-MGLVHG 125
           P+ +A VS ++ +QC           V   +L  K K+     R  G +R+ R +GLVHG
Sbjct: 68  PVPRADVSAEEPKQC----------EVPVRELGRKRKVPVVAERKIGMRRSGRSIGLVHG 127

Query: 126 SMSVVHQIHALVVHKCLKIDAQVIFVDIGVDEEARAVLLVDVHLPVELWSGWQFPRSKTV 185
           S+SVVHQ+HALVV+KCL+IDA+++ V+ G   E RAV+LVDV+LP+ + +GWQFPRS +V
Sbjct: 128 SISVVHQLHALVVNKCLRIDARLVRVEAGDSGEVRAVVLVDVYLPIAMLAGWQFPRSGSV 171

The following BLAST results are available for this feature:

BLAST of CmoCh04G014060 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FB304_ARATH	2.0e-27	38.78	F-box protein At3g54460 OS=Arabidopsis thaliana GN=At3g54460 PE=2 SV=1	[more]

BLAST of CmoCh04G014060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTQ6_CUCSA	4.6e-68	75.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623770 PE=4 SV=1	[more]
E5GCJ6_CUCME	1.1e-66	75.14	Chromatin remodeling complex subunit (Fragment) OS=Cucumis melo subsp. melo PE=4...	[more]
A5BGE7_VITVI	4.7e-28	45.11	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032626 PE=4 SV=1	[more]
M5XQS9_PRUPE	4.0e-27	45.95	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015535mg PE=4 SV=1	[more]
F6I5R7_VITVI	2.0e-26	44.02	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g03330 PE=4 SV=...	[more]

BLAST of CmoCh04G014060 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G54460.1	1.1e-28	38.78	SNF2 domain-containing protein / helicase domain-containing protein ...	[more]

BLAST of CmoCh04G014060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449272\|ref\|XP_004142389.1\|	6.6e-68	75.56	PREDICTED: F-box protein At3g54460 [Cucumis sativus]	[more]
gi\|307136385\|gb\|ADN34195.1\|	1.6e-66	75.14	chromatin remodeling complex subunit [Cucumis melo subsp. melo]	[more]
gi\|659092199\|ref\|XP_008446949.1\|	1.6e-66	75.14	PREDICTED: F-box protein At3g54460 [Cucumis melo]	[more]
gi\|658057884\|ref\|XP_008364734.1\|	6.5e-31	49.21	PREDICTED: F-box protein At3g54460-like [Malus domestica]	[more]
gi\|694327267\|ref\|XP_009354510.1\|	2.5e-30	46.41	PREDICTED: F-box protein At3g54460-like, partial [Pyrus x bretschneideri]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G014060.1	CmoCh04G014060.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G014060	Cp4.1LG01g14940	Cucurbita pepo (Zucchini)	cmocpeB673

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G014060	Watermelon (97103) v1	cmowmB701
CmoCh04G014060	Cucurbita pepo (Zucchini)	cmocpeB651
CmoCh04G014060	Bottle gourd (USVL1VR-Ls)	cmolsiB660
CmoCh04G014060	Cucumber (Gy14) v2	cgybcmoB650
CmoCh04G014060	Melon (DHL92) v3.6.1	cmomedB720
CmoCh04G014060	Silver-seed gourd	carcmoB0987
CmoCh04G014060	Silver-seed gourd	carcmoB1138
CmoCh04G014060	Cucumber (Chinese Long) v3	cmocucB0874
CmoCh04G014060	Watermelon (97103) v2	cmowmbB737
CmoCh04G014060	Cucurbita moschata (Rifu)	cmocmoB336
CmoCh04G014060	Cucumber (Gy14) v1	cgycmoB0848
CmoCh04G014060	Cucurbita maxima (Rimu)	cmacmoB420
CmoCh04G014060	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G014060	Wild cucumber (PI 183967)	cmocpiB745
CmoCh04G014060	Cucumber (Chinese Long) v2	cmocuB738
CmoCh04G014060	Melon (DHL92) v3.5.1	cmomeB631
CmoCh04G014060	Watermelon (Charleston Gray)	cmowcgB662