CmoCh04G011860 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G011860
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	ELF4 protein
Location	Cmo_Chr04 : 6065953 .. 6066342 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGATATCAACCCCCGCCGCAAATCCAAAACCAAGCCTTCAGCCACCACCACCACCACAACCACAACCACCACCAGCGACGACGGCCGACACGACGGCTTCCCTGACGAATGCGACGCCCAGGTGTGGGCCTCCTTCGACCAGACCTTCCGCCAGGTCCAGTCAGTGCTGGACCGTAACAGAGTGCTGATTCAACAGGTGAACGAGAACCACCAGTCTCGAATTCCCAGCAACATGGTGGACAACGTGGCTCTCATCCAAGAACTCAATGGGAACATCTCTAAAGTTGTCTCCATGTACTCCGATTTCTCCTCTGACTTCTCCTCTGGGTTCAATAACAACAAATCCAGAAATGGCAAAAGAGGAAGCAGCAACCCAGATGCTTGA

mRNA sequence

ATGGCCGATATCAACCCCCGCCGCAAATCCAAAACCAAGCCTTCAGCCACCACCACCACCACAACCACAACCACCACCAGCGACGACGGCCGACACGACGGCTTCCCTGACGAATGCGACGCCCAGGTGTGGGCCTCCTTCGACCAGACCTTCCGCCAGGTCCAGTCAGTGCTGGACCGTAACAGAGTGCTGATTCAACAGGTGAACGAGAACCACCAGTCTCGAATTCCCAGCAACATGGTGGACAACGTGGCTCTCATCCAAGAACTCAATGGGAACATCTCTAAAGTTGTCTCCATGTACTCCGATTTCTCCTCTGACTTCTCCTCTGGGTTCAATAACAACAAATCCAGAAATGGCAAAAGAGGAAGCAGCAACCCAGATGCTTGA

Coding sequence (CDS)

ATGGCCGATATCAACCCCCGCCGCAAATCCAAAACCAAGCCTTCAGCCACCACCACCACCACAACCACAACCACCACCAGCGACGACGGCCGACACGACGGCTTCCCTGACGAATGCGACGCCCAGGTGTGGGCCTCCTTCGACCAGACCTTCCGCCAGGTCCAGTCAGTGCTGGACCGTAACAGAGTGCTGATTCAACAGGTGAACGAGAACCACCAGTCTCGAATTCCCAGCAACATGGTGGACAACGTGGCTCTCATCCAAGAACTCAATGGGAACATCTCTAAAGTTGTCTCCATGTACTCCGATTTCTCCTCTGACTTCTCCTCTGGGTTCAATAACAACAAATCCAGAAATGGCAAAAGAGGAAGCAGCAACCCAGATGCTTGA

Homology

[Close]

BLAST of CmoCh04G011860 vs. Swiss-Prot
Match: ELF4_ARATH (Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana GN=ELF4 PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.4e-22
Identity = 56/90 (62.22%), Postives = 69/90 (76.67%), Query Frame = 1


Query: 40  DAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS 99
           D  +W + D+ FRQVQSVLDRNR LIQQVN+NHQSR+  NM  NVALIQELNGNISKVV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 100 MYSDFSSDFSSGFNNNKSRNGKRGSSNPDA 130
           MYSD ++ FSSGF+  K+ +   G++   A
Sbjct: 82  MYSDLNTSFSSGFHGGKNGHDGGGAAGTRA 111

[Close]

BLAST of CmoCh04G011860 vs. Swiss-Prot
Match: EF4L1_ARATH (Protein ELF4-LIKE 1 OS=Arabidopsis thaliana GN=EFL1 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-13
Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 1


Query: 40  DAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS 99
           D +VW +    F++ Q  LD+NR LIQ+VNENH SRIP N+  NV LI E+NGNIS+V+ 
Sbjct: 34  DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query: 100 MYSDFSSDFSSGFNNNKSRNGKRGSS 126
           +YSD S +F+  F+  + R  K G +
Sbjct: 94  IYSDLSLNFAKKFDQRR-RTTKDGDT 118

[Close]

BLAST of CmoCh04G011860 vs. Swiss-Prot
Match: EF4L3_ARATH (Protein ELF4-LIKE 3 OS=Arabidopsis thaliana GN=EFL3 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.2e-13
Identity = 35/89 (39.33%), Postives = 59/89 (66.29%), Query Frame = 1


Query: 38  ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKV 97
           + D ++  +F+++F QVQ++LD NR+LI ++N+NH+S+IP N+  NV LI+ELN N+ +V
Sbjct: 15  QMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRNVGLIRELNNNVRRV 74

Query: 98  VSMYSDFSSDFSSGFNNNKSRNGKRGSSN 127
             +Y D S++FS     +   +   G  N
Sbjct: 75  AHLYVDLSNNFSKSMEASSEGDSSEGRGN 103

[Close]

BLAST of CmoCh04G011860 vs. Swiss-Prot
Match: EF4L4_ARATH (Protein ELF4-LIKE 4 OS=Arabidopsis thaliana GN=EFL4 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.1e-12
Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 1


Query: 34  GFPDE--CDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELN 93
           GF D    D ++  SF ++F  VQ +LD+NR+LI ++N+NH+S+ P N+  NV LI+ELN
Sbjct: 8   GFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELN 67

Query: 94  GNISKVVSMYSDFSSDFS 110
            NI +V S+Y D S  F+
Sbjct: 68  NNIRRVASLYGDLSHSFA 85

[Close]

BLAST of CmoCh04G011860 vs. Swiss-Prot
Match: EF4L2_ARATH (Protein ELF4-LIKE 2 OS=Arabidopsis thaliana GN=EFL2 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-10
Identity = 33/80 (41.25%), Postives = 54/80 (67.50%), Query Frame = 1


Query: 32  HDGFPD--ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQE 91
           + GF +  + D ++  +F ++F QVQ +LD+NR+LI ++N+NH+S+   ++  NV LI+E
Sbjct: 10  YSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNVGLIRE 69

Query: 92  LNGNISKVVSMYSDFSSDFS 110
           LN NI  V S+Y D S  F+
Sbjct: 70  LNNNIRTVASLYGDLSHSFA 89

[Close]

BLAST of CmoCh04G011860 vs. TrEMBL
Match: A0A0A0KM35_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G202370 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 5.3e-51
Identity = 111/129 (86.05%), Postives = 117/129 (90.70%), Query Frame = 1


Query: 1   MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60
           MAD NPRRKSK KPSATTTTTTTTTTSDD  H  FPDE D +VWASFDQTFRQVQSVLDR
Sbjct: 1   MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDR 60

Query: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNNKSRNG 120
           NR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS+ F+N+K R G
Sbjct: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRTG 120

Query: 121 KRGSSNPDA 130
           KRG++NPDA
Sbjct: 121 KRGTTNPDA 129

[Close]

BLAST of CmoCh04G011860 vs. TrEMBL
Match: W9RTW6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002382 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.2e-24
Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = 1


Query: 37  DECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISK 96
           +E D ++W  FDQ+FRQVQ+VLDRNR LIQQVNENHQSRIP NM  NVALIQELNGNISK
Sbjct: 22  EEGDTELWKGFDQSFRQVQTVLDRNRSLIQQVNENHQSRIPDNMAKNVALIQELNGNISK 81

Query: 97  VVSMYSDFSSDFSSGFNNNK--SRNGK 122
           VVS+YSD +S+FS+ FNN++  S NGK
Sbjct: 82  VVSLYSDLNSNFSTLFNNHRSPSTNGK 108

[Close]

BLAST of CmoCh04G011860 vs. TrEMBL
Match: A0A0D2RAV1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G198100 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 7.2e-24
Identity = 62/99 (62.63%), Postives = 78/99 (78.79%), Query Frame = 1


Query: 17  TTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRI 76
           T +++         + D      D ++WASFDQ+F+QVQSVLDRNRVLIQQVN+NHQS+I
Sbjct: 6   TNSSSNKKKLKQQAKQDSEDVNGDPEIWASFDQSFKQVQSVLDRNRVLIQQVNDNHQSKI 65

Query: 77  PSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNN 116
           P NMV+NVALIQELNGNISKVVS+YSD SS+FS+ F+N+
Sbjct: 66  PHNMVENVALIQELNGNISKVVSLYSDLSSNFSTAFHND 104

[Close]

BLAST of CmoCh04G011860 vs. TrEMBL
Match: B9T5X8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0339610 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-23
Identity = 67/111 (60.36%), Postives = 82/111 (73.87%), Query Frame = 1


Query: 20  TTTTTTTSDDGRHDGFPDE----CDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSR 79
           T+ +     + RH    D+     D QVW++F+ TFRQVQSVLDRNR LIQQVNENHQSR
Sbjct: 22  TSNSKRRHKNNRHHNEDDDEEEAGDPQVWSTFNTTFRQVQSVLDRNRSLIQQVNENHQSR 81

Query: 80  IPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNNKSRNGKRGSSN 127
           IP NMV NVALIQELNGNISKVVS+YSD +S+FSS ++ +++ NG    SN
Sbjct: 82  IPDNMVKNVALIQELNGNISKVVSLYSDLNSNFSSSYHQHRNGNGSGNGSN 132

[Close]

BLAST of CmoCh04G011860 vs. TrEMBL
Match: B9HHP4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s06820g PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-23
Identity = 68/116 (58.62%), Postives = 86/116 (74.14%), Query Frame = 1


Query: 10  SKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVN 69
           S  + S   T+  + TT+ +   +   DE DA+VWA+F+ +FRQVQSVLDRNRVLIQQVN
Sbjct: 9   SAAESSMEDTSNPSITTNQNANKE---DEVDAEVWATFNNSFRQVQSVLDRNRVLIQQVN 68

Query: 70  ENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGF---NNNKSRNGKR 123
           ENHQSR P NMV NV+LIQELNGNISKVV +YSD +S+FS+ +   N+N   NGK+
Sbjct: 69  ENHQSRTPDNMVKNVSLIQELNGNISKVVGLYSDLNSNFSTAYHQRNHNGKNNGKK 121

[Close]

BLAST of CmoCh04G011860 vs. TAIR10
Match: AT2G40080.1 (AT2G40080.1 Protein of unknown function (DUF1313))

HSP 1 Score: 104.8 bits (260), Expect = 4.2e-23
Identity = 56/90 (62.22%), Postives = 69/90 (76.67%), Query Frame = 1


Query: 40  DAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS 99
           D  +W + D+ FRQVQSVLDRNR LIQQVN+NHQSR+  NM  NVALIQELNGNISKVV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 100 MYSDFSSDFSSGFNNNKSRNGKRGSSNPDA 130
           MYSD ++ FSSGF+  K+ +   G++   A
Sbjct: 82  MYSDLNTSFSSGFHGGKNGHDGGGAAGTRA 111

[Close]

BLAST of CmoCh04G011860 vs. TAIR10
Match: AT2G29950.1 (AT2G29950.1 ELF4-like 1)

HSP 1 Score: 77.4 bits (189), Expect = 7.1e-15
Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 1


Query: 40  DAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS 99
           D +VW +    F++ Q  LD+NR LIQ+VNENH SRIP N+  NV LI E+NGNIS+V+ 
Sbjct: 34  DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query: 100 MYSDFSSDFSSGFNNNKSRNGKRGSS 126
           +YSD S +F+  F+  + R  K G +
Sbjct: 94  IYSDLSLNFAKKFDQRR-RTTKDGDT 118

[Close]

BLAST of CmoCh04G011860 vs. TAIR10
Match: AT2G06255.1 (AT2G06255.1 ELF4-like 3)

HSP 1 Score: 74.7 bits (182), Expect = 4.6e-14
Identity = 35/89 (39.33%), Postives = 59/89 (66.29%), Query Frame = 1


Query: 38  ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKV 97
           + D ++  +F+++F QVQ++LD NR+LI ++N+NH+S+IP N+  NV LI+ELN N+ +V
Sbjct: 15  QMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRNVGLIRELNNNVRRV 74

Query: 98  VSMYSDFSSDFSSGFNNNKSRNGKRGSSN 127
             +Y D S++FS     +   +   G  N
Sbjct: 75  AHLYVDLSNNFSKSMEASSEGDSSEGRGN 103

[Close]

BLAST of CmoCh04G011860 vs. TAIR10
Match: AT1G17455.1 (AT1G17455.1 ELF4-like 4)

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-13
Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 1


Query: 34  GFPDE--CDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELN 93
           GF D    D ++  SF ++F  VQ +LD+NR+LI ++N+NH+S+ P N+  NV LI+ELN
Sbjct: 8   GFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELN 67

Query: 94  GNISKVVSMYSDFSSDFS 110
            NI +V S+Y D S  F+
Sbjct: 68  NNIRRVASLYGDLSHSFA 85

[Close]

BLAST of CmoCh04G011860 vs. TAIR10
Match: AT1G72630.1 (AT1G72630.1 ELF4-like 2)

HSP 1 Score: 67.0 bits (162), Expect = 9.6e-12
Identity = 33/80 (41.25%), Postives = 54/80 (67.50%), Query Frame = 1


Query: 32  HDGFPD--ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQE 91
           + GF +  + D ++  +F ++F QVQ +LD+NR+LI ++N+NH+S+   ++  NV LI+E
Sbjct: 10  YSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNVGLIRE 69

Query: 92  LNGNISKVVSMYSDFSSDFS 110
           LN NI  V S+Y D S  F+
Sbjct: 70  LNNNIRTVASLYGDLSHSFA 89

[Close]

BLAST of CmoCh04G011860 vs. NCBI nr
Match: gi|659126543|ref|XP_008463236.1| (PREDICTED: protein EARLY FLOWERING 4-like [Cucumis melo])

HSP 1 Score: 212.6 bits (540), Expect = 4.0e-52
Identity = 113/129 (87.60%), Postives = 120/129 (93.02%), Query Frame = 1


Query: 1   MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60
           MAD NPRRKSK KPSATTTTTTTTTTSDD  HD FPDE DA+VWASFDQTFRQVQSVLDR
Sbjct: 1   MADNNPRRKSKMKPSATTTTTTTTTTSDDPPHDAFPDEYDAEVWASFDQTFRQVQSVLDR 60

Query: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNNKSRNG 120
           NR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS+ F+N+K R+G
Sbjct: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRSG 120

Query: 121 KRGSSNPDA 130
           KRG++NPDA
Sbjct: 121 KRGTTNPDA 129

[Close]

BLAST of CmoCh04G011860 vs. NCBI nr
Match: gi|449463052|ref|XP_004149248.1| (PREDICTED: protein EARLY FLOWERING 4-like [Cucumis sativus])

HSP 1 Score: 208.4 bits (529), Expect = 7.6e-51
Identity = 111/129 (86.05%), Postives = 117/129 (90.70%), Query Frame = 1


Query: 1   MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60
           MAD NPRRKSK KPSATTTTTTTTTTSDD  H  FPDE D +VWASFDQTFRQVQSVLDR
Sbjct: 1   MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDR 60

Query: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNNKSRNG 120
           NR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS+ F+N+K R G
Sbjct: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRTG 120

Query: 121 KRGSSNPDA 130
           KRG++NPDA
Sbjct: 121 KRGTTNPDA 129

[Close]

BLAST of CmoCh04G011860 vs. NCBI nr
Match: gi|703136838|ref|XP_010106262.1| (hypothetical protein L484_002382 [Morus notabilis])

HSP 1 Score: 119.4 bits (298), Expect = 4.6e-24
Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = 1


Query: 37  DECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISK 96
           +E D ++W  FDQ+FRQVQ+VLDRNR LIQQVNENHQSRIP NM  NVALIQELNGNISK
Sbjct: 22  EEGDTELWKGFDQSFRQVQTVLDRNRSLIQQVNENHQSRIPDNMAKNVALIQELNGNISK 81

Query: 97  VVSMYSDFSSDFSSGFNNNK--SRNGK 122
           VVS+YSD +S+FS+ FNN++  S NGK
Sbjct: 82  VVSLYSDLNSNFSTLFNNHRSPSTNGK 108

[Close]

BLAST of CmoCh04G011860 vs. NCBI nr
Match: gi|823239955|ref|XP_012452619.1| (PREDICTED: protein EARLY FLOWERING 4 [Gossypium raimondii])

HSP 1 Score: 118.2 bits (295), Expect = 1.0e-23
Identity = 62/99 (62.63%), Postives = 78/99 (78.79%), Query Frame = 1


Query: 17  TTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRI 76
           T +++         + D      D ++WASFDQ+F+QVQSVLDRNRVLIQQVN+NHQS+I
Sbjct: 6   TNSSSNKKKLKQQAKQDSEDVNGDPEIWASFDQSFKQVQSVLDRNRVLIQQVNDNHQSKI 65

Query: 77  PSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNN 116
           P NMV+NVALIQELNGNISKVVS+YSD SS+FS+ F+N+
Sbjct: 66  PHNMVENVALIQELNGNISKVVSLYSDLSSNFSTAFHND 104

[Close]

BLAST of CmoCh04G011860 vs. NCBI nr
Match: gi|1012253849|ref|XP_015944333.1| (PREDICTED: protein EARLY FLOWERING 4 [Arachis duranensis])

HSP 1 Score: 118.2 bits (295), Expect = 1.0e-23
Identity = 69/114 (60.53%), Postives = 86/114 (75.44%), Query Frame = 1


Query: 7   RRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQ 66
           R KS     +TTTTT +TTT +        +E D +VWA+ +++FRQVQSVLDRNR LIQ
Sbjct: 23  RHKSHRHRPSTTTTTVSTTTGESDCEVEEGEEGDPEVWANMNRSFRQVQSVLDRNRALIQ 82

Query: 67  QVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNNKSRNG 121
           QVNENHQSRIP  MV NV+LIQELNGNISKVVSMYSD +S+F++    ++S+NG
Sbjct: 83  QVNENHQSRIPDKMVKNVSLIQELNGNISKVVSMYSDLNSNFTNAC-QHRSKNG 135

The following BLAST results are available for this feature:

BLAST of CmoCh04G011860 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ELF4_ARATH	7.4e-22	62.22	Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana GN=ELF4 PE=1 SV=1	[more]
EF4L1_ARATH	1.3e-13	48.84	Protein ELF4-LIKE 1 OS=Arabidopsis thaliana GN=EFL1 PE=2 SV=1	[more]
EF4L3_ARATH	8.2e-13	39.33	Protein ELF4-LIKE 3 OS=Arabidopsis thaliana GN=EFL3 PE=3 SV=1	[more]
EF4L4_ARATH	3.1e-12	46.15	Protein ELF4-LIKE 4 OS=Arabidopsis thaliana GN=EFL4 PE=2 SV=1	[more]
EF4L2_ARATH	1.7e-10	41.25	Protein ELF4-LIKE 2 OS=Arabidopsis thaliana GN=EFL2 PE=2 SV=1	[more]

BLAST of CmoCh04G011860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KM35_CUCSA	5.3e-51	86.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G202370 PE=4 SV=1	[more]
W9RTW6_9ROSA	3.2e-24	72.41	Uncharacterized protein OS=Morus notabilis GN=L484_002382 PE=4 SV=1	[more]
A0A0D2RAV1_GOSRA	7.2e-24	62.63	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G198100 PE=4 SV=1	[more]
B9T5X8_RICCO	1.2e-23	60.36	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0339610 PE=4 SV=1	[more]
B9HHP4_POPTR	1.2e-23	58.62	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s06820g PE=4 SV=1	[more]

BLAST of CmoCh04G011860 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G40080.1	4.2e-23	62.22	Protein of unknown function (DUF1313)	[more]
AT2G29950.1	7.1e-15	48.84	ELF4-like 1	[more]
AT2G06255.1	4.6e-14	39.33	ELF4-like 3	[more]
AT1G17455.1	1.8e-13	46.15	ELF4-like 4	[more]
AT1G72630.1	9.6e-12	41.25	ELF4-like 2	[more]

BLAST of CmoCh04G011860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126543\|ref\|XP_008463236.1\|	4.0e-52	87.60	PREDICTED: protein EARLY FLOWERING 4-like [Cucumis melo]	[more]
gi\|449463052\|ref\|XP_004149248.1\|	7.6e-51	86.05	PREDICTED: protein EARLY FLOWERING 4-like [Cucumis sativus]	[more]
gi\|703136838\|ref\|XP_010106262.1\|	4.6e-24	72.41	hypothetical protein L484_002382 [Morus notabilis]	[more]
gi\|823239955\|ref\|XP_012452619.1\|	1.0e-23	62.63	PREDICTED: protein EARLY FLOWERING 4 [Gossypium raimondii]	[more]
gi\|1012253849\|ref\|XP_015944333.1\|	1.0e-23	60.53	PREDICTED: protein EARLY FLOWERING 4 [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009741	EARLY_FLOWERING_4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009649	entrainment of circadian clock
biological_process	GO:0048573	photoperiodism, flowering
biological_process	GO:0042753	positive regulation of circadian rhythm
biological_process	GO:0010017	red or far-red light signaling pathway
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0010114	response to red light
biological_process	GO:0080167	response to karrikin
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0042803	protein homodimerization activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G011860.1	CmoCh04G011860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009741	Protein of unknown function DUF1313	PFAM	PF07011	DUF1313	coord: 38..118 score: 1.6
None	No IPR available	PANTHER	PTHR33469	FAMILY NOT NAMED	coord: 16..116 score: 3.1
None	No IPR available	PANTHER	PTHR33469:SF5	PROTEIN EARLY FLOWERING 4	coord: 16..116 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G011860	Cucsa.368590	Cucumber (Gy14) v1	cgycmoB1023
CmoCh04G011860	CmaCh04G011180	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G011860	Cla004345	Watermelon (97103) v1	cmowmB684
CmoCh04G011860	Csa5G202370	Cucumber (Chinese Long) v2	cmocuB736
CmoCh04G011860	MELO3C025191	Melon (DHL92) v3.5.1	cmomeB648
CmoCh04G011860	ClCG07G004150	Watermelon (Charleston Gray)	cmowcgB675
CmoCh04G011860	CSPI05G10620	Wild cucumber (PI 183967)	cmocpiB746
CmoCh04G011860	Lsi04G009760	Bottle gourd (USVL1VR-Ls)	cmolsiB669
CmoCh04G011860	Cp4.1LG01g11280	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G011860	CsaV3_5G010120	Cucumber (Chinese Long) v3	cmocucB0872
CmoCh04G011860	Cla97C07G132630	Watermelon (97103) v2	cmowmbB754
CmoCh04G011860	Bhi07G000512	Wax gourd	cmowgoB0888
CmoCh04G011860	CsGy5G007930	Cucumber (Gy14) v2	cgybcmoB651
CmoCh04G011860	Carg00222	Silver-seed gourd	carcmoB0923

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G011860	Wild cucumber (PI 183967)	cmocpiB691
CmoCh04G011860	Wild cucumber (PI 183967)	cmocpiB699
CmoCh04G011860	Wild cucumber (PI 183967)	cmocpiB773
CmoCh04G011860	Cucumber (Chinese Long) v2	cmocuB677
CmoCh04G011860	Cucumber (Chinese Long) v2	cmocuB688
CmoCh04G011860	Cucumber (Chinese Long) v2	cmocuB764
CmoCh04G011860	Melon (DHL92) v3.5.1	cmomeB658
CmoCh04G011860	Melon (DHL92) v3.5.1	cmomeB675
CmoCh04G011860	Melon (DHL92) v3.5.1	cmomeB678
CmoCh04G011860	Watermelon (Charleston Gray)	cmowcgB617
CmoCh04G011860	Watermelon (Charleston Gray)	cmowcgB625
CmoCh04G011860	Watermelon (Charleston Gray)	cmowcgB648
CmoCh04G011860	Watermelon (97103) v1	cmowmB656
CmoCh04G011860	Watermelon (97103) v1	cmowmB668
CmoCh04G011860	Watermelon (97103) v1	cmowmB734
CmoCh04G011860	Cucurbita pepo (Zucchini)	cmocpeB675
CmoCh04G011860	Cucurbita pepo (Zucchini)	cmocpeB694
CmoCh04G011860	Cucurbita pepo (Zucchini)	cmocpeB699
CmoCh04G011860	Cucurbita pepo (Zucchini)	cmocpeB711
CmoCh04G011860	Bottle gourd (USVL1VR-Ls)	cmolsiB638
CmoCh04G011860	Bottle gourd (USVL1VR-Ls)	cmolsiB648
CmoCh04G011860	Bottle gourd (USVL1VR-Ls)	cmolsiB656
CmoCh04G011860	Cucumber (Gy14) v2	cgybcmoB124
CmoCh04G011860	Cucumber (Gy14) v2	cgybcmoB390
CmoCh04G011860	Cucumber (Gy14) v2	cgybcmoB820
CmoCh04G011860	Melon (DHL92) v3.6.1	cmomedB736
CmoCh04G011860	Melon (DHL92) v3.6.1	cmomedB748
CmoCh04G011860	Melon (DHL92) v3.6.1	cmomedB764
CmoCh04G011860	Melon (DHL92) v3.6.1	cmomedB769
CmoCh04G011860	Silver-seed gourd	carcmoB0124
CmoCh04G011860	Silver-seed gourd	carcmoB1341
CmoCh04G011860	Cucumber (Chinese Long) v3	cmocucB0804
CmoCh04G011860	Cucumber (Chinese Long) v3	cmocucB0818
CmoCh04G011860	Cucumber (Chinese Long) v3	cmocucB0903
CmoCh04G011860	Watermelon (97103) v2	cmowmbB691
CmoCh04G011860	Watermelon (97103) v2	cmowmbB700
CmoCh04G011860	Watermelon (97103) v2	cmowmbB720
CmoCh04G011860	Wax gourd	cmowgoB0860
CmoCh04G011860	Wax gourd	cmowgoB0882
CmoCh04G011860	Cucurbita moschata (Rifu)	cmocmoB186
CmoCh04G011860	Cucurbita moschata (Rifu)	cmocmoB219
CmoCh04G011860	Cucurbita moschata (Rifu)	cmocmoB464
CmoCh04G011860	Cucurbita moschata (Rifu)	cmocmoB466
CmoCh04G011860	Cucurbita moschata (Rifu)	cmocmoB473
CmoCh04G011860	Cucumber (Gy14) v1	cgycmoB0372
CmoCh04G011860	Cucumber (Gy14) v1	cgycmoB0505
CmoCh04G011860	Cucurbita maxima (Rimu)	cmacmoB238
CmoCh04G011860	Cucurbita maxima (Rimu)	cmacmoB264
CmoCh04G011860	Cucurbita maxima (Rimu)	cmacmoB730
CmoCh04G011860	Cucurbita maxima (Rimu)	cmacmoB735
CmoCh04G011860	Cucurbita maxima (Rimu)	cmacmoB828