Carg00222 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00222
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ELF4-like 4
Location	Cucurbita_argyrosperma_scaffold_001 : 1157759 .. 1158148 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGATATCAACCCCCGCCGCAAATCCAAAACCAAGCCTTCAGCCACCACCACCACCACAACCACAACCACCACCAGCGACGACGGCCGACACGACGGCTTCCCTGACGAATGCGACGCCCAGGTGTGGGCCTCCTTCGACCAGACCTTCCGCCAGGTCCAGTCAGTGCTGGACCGTAACAGAGTGCTGATTCAACAGGTGAACGAGAACCACCAGTCTCGAATTCCCAGCAACATGGTGGACAACGTGGCTCTCATCCAAGAACTCAATGGGAACATCTCTAAAGTTGTCTCCATGTACTCCGATTTCTCCTCTGACTTCTCCTCTGGGTTCAATAACCACAAATCCAGAAATGGCAAAAGAGGAAGCAGCAACCCAGATGCTTGA

mRNA sequence

ATGGCCGATATCAACCCCCGCCGCAAATCCAAAACCAAGCCTTCAGCCACCACCACCACCACAACCACAACCACCACCAGCGACGACGGCCGACACGACGGCTTCCCTGACGAATGCGACGCCCAGGTGTGGGCCTCCTTCGACCAGACCTTCCGCCAGGTCCAGTCAGTGCTGGACCGTAACAGAGTGCTGATTCAACAGGTGAACGAGAACCACCAGTCTCGAATTCCCAGCAACATGGTGGACAACGTGGCTCTCATCCAAGAACTCAATGGGAACATCTCTAAAGTTGTCTCCATGTACTCCGATTTCTCCTCTGACTTCTCCTCTGGGTTCAATAACCACAAATCCAGAAATGGCAAAAGAGGAAGCAGCAACCCAGATGCTTGA

Coding sequence (CDS)

ATGGCCGATATCAACCCCCGCCGCAAATCCAAAACCAAGCCTTCAGCCACCACCACCACCACAACCACAACCACCACCAGCGACGACGGCCGACACGACGGCTTCCCTGACGAATGCGACGCCCAGGTGTGGGCCTCCTTCGACCAGACCTTCCGCCAGGTCCAGTCAGTGCTGGACCGTAACAGAGTGCTGATTCAACAGGTGAACGAGAACCACCAGTCTCGAATTCCCAGCAACATGGTGGACAACGTGGCTCTCATCCAAGAACTCAATGGGAACATCTCTAAAGTTGTCTCCATGTACTCCGATTTCTCCTCTGACTTCTCCTCTGGGTTCAATAACCACAAATCCAGAAATGGCAAAAGAGGAAGCAGCAACCCAGATGCTTGA

Protein sequence

MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNHKSRNGKRGSSNPDA

Homology

[Close]

BLAST of Carg00222 vs. NCBI nr
Match: XP_022976942.1 (protein EARLY FLOWERING 4-like [Cucurbita maxima])

HSP 1 Score: 172.2 bits (435), Expect = 1.2e-39
Identity = 124/129 (96.12%), Postives = 125/129 (96.90%), Query Frame = 0


Query: 1   MADINPRRKSXXXXXXXXXXXXXXXXXXXGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60
           MA+IN RR  XXXXXXXXXXXXXXXXXXXGRHDGFPDECD QVWASFDQTFRQVQSVLDR
Sbjct: 1   MAEINHRRXXXXXXXXXXXXXXXXXXXXXGRHDGFPDECDPQVWASFDQTFRQVQSVLDR 60

Query: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSXXXXXXXXXXXXXKSRNG 120
           NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSXXXXXXXXXXXXXKSRNG
Sbjct: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSXXXXXXXXXXXXXKSRNG 120

Query: 121 KRGSSNPDA 130
           KRGSSNPDA
Sbjct: 121 KRGSSNPDA 129

[Close]

BLAST of Carg00222 vs. NCBI nr
Match: XP_022956860.1 (protein EARLY FLOWERING 4-like [Cucurbita moschata] >XP_023534577.1 protein EARLY FLOWERING 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154.8 bits (390), Expect = 1.9e-34
Identity = 117/129 (90.70%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 1   MADINPRRKSXXXXXXXXXXXXXXXXXXXGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60
           MADINPRRKSXXXXXXXXXXXXXXXXXXXGRHDGFPDECDAQVWASFDQTFRQVQSVLDR
Sbjct: 1   MADINPRRKSXXXXXXXXXXXXXXXXXXXGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60

Query: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSXXXXXXXXXXXXXKSRNG 120
           NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVV    XXXXXXXXXXXXX     
Sbjct: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 KRGSSNPDA 130
              SSNPDA
Sbjct: 121 XXXSSNPDA 129

[Close]

BLAST of Carg00222 vs. NCBI nr
Match: XP_008463236.2 (PREDICTED: uncharacterized protein LOC103501440 [Cucumis melo])

HSP 1 Score: 151.0 bits (380), Expect = 2.8e-33
Identity = 77/98 (78.57%), Postives = 81/98 (82.65%), Query Frame = 0


Query: 32  HDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELN 91
           HD FPDE DA+VWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNVALIQELN
Sbjct: 101 HDAFPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELN 160

Query: 92  GNISKVVSMYSXXXXXXXXXXXXXKSRNGKRGSSNPDA 130
           GNISKVVSMYS             K R+GKRG++NPDA
Sbjct: 161 GNISKVVSMYSDFSSDFSTAFHNHKPRSGKRGTTNPDA 198

[Close]

BLAST of Carg00222 vs. NCBI nr
Match: XP_004149248.1 (PREDICTED: protein EARLY FLOWERING 4-like [Cucumis sativus] >KGN50653.1 hypothetical protein Csa_5G202370 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 5.8e-31
Identity = 74/95 (77.89%), Postives = 77/95 (81.05%), Query Frame = 0


Query: 35  FPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNI 94
           FPDE D +VWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNVALIQELNGNI
Sbjct: 35  FPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNI 94

Query: 95  SKVVSMYSXXXXXXXXXXXXXKSRNGKRGSSNPDA 130
           SKVVSMYS             K R GKRG++NPDA
Sbjct: 95  SKVVSMYSDFSSDFSTAFHNHKPRTGKRGTTNPDA 129

[Close]

BLAST of Carg00222 vs. NCBI nr
Match: XP_022156910.1 (protein EARLY FLOWERING 4-like [Momordica charantia])

HSP 1 Score: 124.4 bits (311), Expect = 2.8e-25
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 37  DECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISK 96
           DE DA+VWASFDQTFRQVQSVLDRNRVLIQQVNENHQSR+PSNMVDNVALIQELNGNISK
Sbjct: 32  DEGDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISK 91

Query: 97  VVSMY 102
           VVSMY
Sbjct: 92  VVSMY 96

[Close]

BLAST of Carg00222 vs. TAIR10
Match: AT2G29950.1 (ELF4-like 1)

HSP 1 Score: 74.7 bits (182), Expect = 4.6e-14
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 40  DAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS 99
           D +VW +    F++ Q  LD+NR LIQ+VNENH SRIP N+  NV LI E+NGNIS+V+ 
Sbjct: 34  DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query: 100 MYS 103
           +YS
Sbjct: 94  IYS 96

[Close]

BLAST of Carg00222 vs. TAIR10
Match: AT2G06255.1 (ELF4-like 3)

HSP 1 Score: 70.9 bits (172), Expect = 6.7e-13
Identity = 29/64 (45.31%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 38  ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKV 97
           + D ++  +F+++F QVQ++LD NR+LI ++N+NH+S+IP N+  NV LI+ELN N+ +V
Sbjct: 15  QMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRNVGLIRELNNNVRRV 74

Query: 98  VSMY 102
             +Y
Sbjct: 75  AHLY 78

[Close]

BLAST of Carg00222 vs. TAIR10
Match: AT1G17455.1 (ELF4-like 4)

HSP 1 Score: 68.2 bits (165), Expect = 4.3e-12
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 34  GFPD--ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELN 93
           GF D    D ++  SF ++F  VQ +LD+NR+LI ++N+NH+S+ P N+  NV LI+ELN
Sbjct: 8   GFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELN 67

Query: 94  GNISKVVSMY 102
            NI +V S+Y
Sbjct: 68  NNIRRVASLY 77

[Close]

BLAST of Carg00222 vs. TAIR10
Match: AT2G40080.1 (Protein of unknown function (DUF1313))

HSP 1 Score: 67.8 bits (164), Expect = 5.7e-12
Identity = 36/63 (57.14%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 40  DAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS 99
           D  +W + D+ FRQVQSVLD             QSR+  NM  NVALIQELNGNISKVV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDXXXXXXXXXXXXXQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 100 MYS 103
           MYS
Sbjct: 82  MYS 84

[Close]

BLAST of Carg00222 vs. TAIR10
Match: AT1G72630.1 (ELF4-like 2)

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-10
Identity = 30/72 (41.67%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 32  HDGFPD--ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQE 91
           + GF +  + D ++  +F ++F QVQ +LD+NR+LI ++N+NH+S+   ++  NV LI+E
Sbjct: 10  YSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNVGLIRE 69

Query: 92  LNGNISKVVSMY 102
           LN NI  V S+Y
Sbjct: 70  LNNNIRTVASLY 81

[Close]

BLAST of Carg00222 vs. Swiss-Prot
Match: sp|O80877|EF4L1_ARATH (Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.3e-13
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 40  DAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS 99
           D +VW +    F++ Q  LD+NR LIQ+VNENH SRIP N+  NV LI E+NGNIS+V+ 
Sbjct: 34  DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query: 100 MYS 103
           +YS
Sbjct: 94  IYS 96

[Close]

BLAST of Carg00222 vs. Swiss-Prot
Match: sp|Q8S8F5|EF4L3_ARATH (Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-11
Identity = 29/64 (45.31%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 38  ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKV 97
           + D ++  +F+++F QVQ++LD NR+LI ++N+NH+S+IP N+  NV LI+ELN N+ +V
Sbjct: 15  QMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRNVGLIRELNNNVRRV 74

Query: 98  VSMY 102
             +Y
Sbjct: 75  AHLY 78

[Close]

BLAST of Carg00222 vs. Swiss-Prot
Match: sp|Q570U6|EF4L4_ARATH (Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.8e-11
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 34  GFPD--ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELN 93
           GF D    D ++  SF ++F  VQ +LD+NR+LI ++N+NH+S+ P N+  NV LI+ELN
Sbjct: 8   GFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELN 67

Query: 94  GNISKVVSMY 102
            NI +V S+Y
Sbjct: 68  NNIRRVASLY 77

[Close]

BLAST of Carg00222 vs. Swiss-Prot
Match: sp|O04211|ELF4_ARATH (Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-10
Identity = 36/63 (57.14%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 40  DAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS 99
           D  +W + D+ FRQVQSVLD             QSR+  NM  NVALIQELNGNISKVV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDXXXXXXXXXXXXXQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 100 MYS 103
           MYS
Sbjct: 82  MYS 84

[Close]

BLAST of Carg00222 vs. Swiss-Prot
Match: sp|Q94BS8|EF4L2_ARATH (Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.3e-09
Identity = 30/72 (41.67%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 32  HDGFPD--ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQE 91
           + GF +  + D ++  +F ++F QVQ +LD+NR+LI ++N+NH+S+   ++  NV LI+E
Sbjct: 10  YSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNVGLIRE 69

Query: 92  LNGNISKVVSMY 102
           LN NI  V S+Y
Sbjct: 70  LNNNIRTVASLY 81

[Close]

BLAST of Carg00222 vs. TrEMBL
Match: tr|A0A1S3CIT1|A0A1S3CIT1_CUCME (uncharacterized protein LOC103501440 OS=Cucumis melo OX=3656 GN=LOC103501440 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.9e-33
Identity = 77/98 (78.57%), Postives = 81/98 (82.65%), Query Frame = 0


Query: 32  HDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELN 91
           HD FPDE DA+VWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNVALIQELN
Sbjct: 101 HDAFPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELN 160

Query: 92  GNISKVVSMYSXXXXXXXXXXXXXKSRNGKRGSSNPDA 130
           GNISKVVSMYS             K R+GKRG++NPDA
Sbjct: 161 GNISKVVSMYSDFSSDFSTAFHNHKPRSGKRGTTNPDA 198

[Close]

BLAST of Carg00222 vs. TrEMBL
Match: tr|A0A0A0KM35|A0A0A0KM35_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G202370 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.9e-31
Identity = 74/95 (77.89%), Postives = 77/95 (81.05%), Query Frame = 0


Query: 35  FPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNI 94
           FPDE D +VWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNVALIQELNGNI
Sbjct: 35  FPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNI 94

Query: 95  SKVVSMYSXXXXXXXXXXXXXKSRNGKRGSSNPDA 130
           SKVVSMYS             K R GKRG++NPDA
Sbjct: 95  SKVVSMYSDFSSDFSTAFHNHKPRTGKRGTTNPDA 129

[Close]

BLAST of Carg00222 vs. TrEMBL
Match: tr|A0A1U8IYU5|A0A1U8IYU5_GOSHI (protein EARLY FLOWERING 4-like OS=Gossypium hirsutum OX=3635 GN=LOC107900443 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-21
Identity = 53/63 (84.13%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 40  DAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS 99
           D ++WASFDQ+F+QVQSVLDRNRVLIQQVN+NHQS+IP NMV+NVALIQELNGNISKVVS
Sbjct: 29  DPEIWASFDQSFKQVQSVLDRNRVLIQQVNDNHQSKIPHNMVENVALIQELNGNISKVVS 88

Query: 100 MYS 103
           +YS
Sbjct: 89  LYS 91

[Close]

BLAST of Carg00222 vs. TrEMBL
Match: tr|A0A0D2RAV1|A0A0D2RAV1_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G198100 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-21
Identity = 53/63 (84.13%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 40  DAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS 99
           D ++WASFDQ+F+QVQSVLDRNRVLIQQVN+NHQS+IP NMV+NVALIQELNGNISKVVS
Sbjct: 29  DPEIWASFDQSFKQVQSVLDRNRVLIQQVNDNHQSKIPHNMVENVALIQELNGNISKVVS 88

Query: 100 MYS 103
           +YS
Sbjct: 89  LYS 91

[Close]

BLAST of Carg00222 vs. TrEMBL
Match: tr|B9HHP4|B9HHP4_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G068200v3 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.1e-21
Identity = 54/66 (81.82%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 37  DECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISK 96
           DE DA+VWA+F+ +FRQVQSVLDRNRVLIQQVNENHQSR P NMV NV+LIQELNGNISK
Sbjct: 33  DEVDAEVWATFNNSFRQVQSVLDRNRVLIQQVNENHQSRTPDNMVKNVSLIQELNGNISK 92

Query: 97  VVSMYS 103
           VV +YS
Sbjct: 93  VVGLYS 98

The following BLAST results are available for this feature:

BLAST of Carg00222 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022976942.1	1.2e-39	96.12	protein EARLY FLOWERING 4-like [Cucurbita maxima]	[more]
XP_022956860.1	1.9e-34	90.70	protein EARLY FLOWERING 4-like [Cucurbita moschata] >XP_023534577.1 protein EARL...	[more]
XP_008463236.2	2.8e-33	78.57	PREDICTED: uncharacterized protein LOC103501440 [Cucumis melo]	[more]
XP_004149248.1	5.8e-31	77.89	PREDICTED: protein EARLY FLOWERING 4-like [Cucumis sativus] >KGN50653.1 hypothet...	[more]
XP_022156910.1	2.8e-25	95.38	protein EARLY FLOWERING 4-like [Momordica charantia]	[more]

BLAST of Carg00222 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G29950.1	4.6e-14	55.56	ELF4-like 1	[more]
AT2G06255.1	6.7e-13	45.31	ELF4-like 3	[more]
AT1G17455.1	4.3e-12	47.14	ELF4-like 4	[more]
AT2G40080.1	5.7e-12	57.14	Protein of unknown function (DUF1313)	[more]
AT1G72630.1	1.8e-10	41.67	ELF4-like 2	[more]

BLAST of Carg00222 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O80877\|EF4L1_ARATH	8.3e-13	55.56	Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1	[more]
sp\|Q8S8F5\|EF4L3_ARATH	1.2e-11	45.31	Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1	[more]
sp\|Q570U6\|EF4L4_ARATH	7.8e-11	47.14	Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1	[more]
sp\|O04211\|ELF4_ARATH	1.0e-10	57.14	Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1	[more]
sp\|Q94BS8\|EF4L2_ARATH	3.3e-09	41.67	Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1	[more]

BLAST of Carg00222 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CIT1\|A0A1S3CIT1_CUCME	1.9e-33	78.57	uncharacterized protein LOC103501440 OS=Cucumis melo OX=3656 GN=LOC103501440 PE=...	[more]
tr\|A0A0A0KM35\|A0A0A0KM35_CUCSA	3.9e-31	77.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G202370 PE=4 SV=1	[more]
tr\|A0A1U8IYU5\|A0A1U8IYU5_GOSHI	1.2e-21	84.13	protein EARLY FLOWERING 4-like OS=Gossypium hirsutum OX=3635 GN=LOC107900443 PE=...	[more]
tr\|A0A0D2RAV1\|A0A0D2RAV1_GOSRA	1.2e-21	84.13	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G198100 PE=4 ...	[more]
tr\|B9HHP4\|B9HHP4_POPTR	2.1e-21	81.82	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G068200v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0042753	positive regulation of circadian rhythm

Vocabulary: **INTERPRO**
Term	Definition
IPR009741	EARLY_FLOWERING_4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042753	positive regulation of circadian rhythm
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00222-RA	Carg00222-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009741	Protein EARLY FLOWERING 4	PFAM	PF07011	DUF1313	coord: 38..118 e-value: 8.4E-37 score: 124.9
IPR009741	Protein EARLY FLOWERING 4	PANTHER	PTHR33469	FAMILY NOT NAMED	coord: 8..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..129
None	No IPR available	PANTHER	PTHR33469:SF5	PROTEIN EARLY FLOWERING 4	coord: 8..121

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00222	Cla004345	Watermelon (97103) v1	carwmB0667
Carg00222	Csa5G202370	Cucumber (Chinese Long) v2	carcuB0694
Carg00222	MELO3C025191	Melon (DHL92) v3.5.1	carmeB0661
Carg00222	ClCG07G004150	Watermelon (Charleston Gray)	carwcgB0651
Carg00222	CSPI05G10620	Wild cucumber (PI 183967)	carcpiB0706
Carg00222	Cucsa.368590	Cucumber (Gy14) v1	carcgyB0755
Carg00222	CmaCh04G011180	Cucurbita maxima (Rimu)	carcmaB0948
Carg00222	CmoCh04G011860	Cucurbita moschata (Rifu)	carcmoB0923
Carg00222	Lsi04G009760	Bottle gourd (USVL1VR-Ls)	carlsiB608
Carg00222	Cp4.1LG01g11280	Cucurbita pepo (Zucchini)	carcpeB0938
Carg00222	CsGy5G007930	Cucumber (Gy14) v2	carcgybB0670
Carg00222	CsaV3_5G010120	Cucumber (Chinese Long) v3	carcucB0708
Carg00222	Cla97C07G132630	Watermelon (97103) v2	carwmbB0700
Carg00222	Bhi07G000512	Wax gourd	carwgoB0785

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00222	Cucurbita maxima (Rimu)	carcmaB0939
Carg00222	Cucurbita maxima (Rimu)	carcmaB0940
Carg00222	Cucurbita maxima (Rimu)	carcmaB0949
Carg00222	Cucurbita maxima (Rimu)	carcmaB0950
Carg00222	Cucurbita moschata (Rifu)	carcmoB0913
Carg00222	Cucurbita moschata (Rifu)	carcmoB0914
Carg00222	Cucurbita moschata (Rifu)	carcmoB0924
Carg00222	Cucurbita moschata (Rifu)	carcmoB0925
Carg00222	Cucurbita pepo (Zucchini)	carcpeB0939
Carg00222	Cucurbita pepo (Zucchini)	carcpeB0940
Carg00222	Cucurbita pepo (Zucchini)	carcpeB0942
Carg00222	Cucurbita pepo (Zucchini)	carcpeB0944
Carg00222	Wild cucumber (PI 183967)	carcpiB0691
Carg00222	Wild cucumber (PI 183967)	carcpiB0695
Carg00222	Wild cucumber (PI 183967)	carcpiB0709
Carg00222	Cucumber (Chinese Long) v2	carcuB0680
Carg00222	Cucumber (Chinese Long) v2	carcuB0683
Carg00222	Cucumber (Chinese Long) v2	carcuB0697
Carg00222	Cucumber (Chinese Long) v3	carcucB0693
Carg00222	Cucumber (Chinese Long) v3	carcucB0697
Carg00222	Cucumber (Chinese Long) v3	carcucB0711
Carg00222	Bottle gourd (USVL1VR-Ls)	carlsiB602
Carg00222	Bottle gourd (USVL1VR-Ls)	carlsiB603
Carg00222	Bottle gourd (USVL1VR-Ls)	carlsiB604
Carg00222	Melon (DHL92) v3.5.1	carmeB0663
Carg00222	Melon (DHL92) v3.5.1	carmeB0665
Carg00222	Melon (DHL92) v3.5.1	carmeB0669
Carg00222	Melon (DHL92) v3.6.1	carmedB0672
Carg00222	Melon (DHL92) v3.6.1	carmedB0674
Carg00222	Melon (DHL92) v3.6.1	carmedB0677
Carg00222	Melon (DHL92) v3.6.1	carmedB0681
Carg00222	Watermelon (Charleston Gray)	carwcgB0642
Carg00222	Watermelon (Charleston Gray)	carwcgB0644
Carg00222	Watermelon (Charleston Gray)	carwcgB0648
Carg00222	Watermelon (97103) v1	carwmB0660
Carg00222	Watermelon (97103) v1	carwmB0662
Carg00222	Watermelon (97103) v1	carwmB0673
Carg00222	Watermelon (97103) v2	carwmbB0687
Carg00222	Watermelon (97103) v2	carwmbB0689
Carg00222	Watermelon (97103) v2	carwmbB0694
Carg00222	Wax gourd	carwgoB0781
Carg00222	Wax gourd	carwgoB0782
Carg00222	Wax gourd	carwgoB0783
Carg00222	Silver-seed gourd	carcarB025
Carg00222	Silver-seed gourd	carcarB099
Carg00222	Silver-seed gourd	carcarB360
Carg00222	Silver-seed gourd	carcarB573
Carg00222	Cucumber (Gy14) v2	carcgybB0655
Carg00222	Cucumber (Gy14) v2	carcgybB0658
Carg00222	Cucumber (Gy14) v2	carcgybB0673
Carg00222	Cucumber (Gy14) v1	carcgyB0744
Carg00222	Cucumber (Gy14) v1	carcgyB0748