CmoCh04G009840 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G009840
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cotton fiber expressed protein 2
Location	Cmo_Chr04 : 4978344 .. 4980170 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGAACACTCTCCCGCTCCCCAAACGAAAGGAAGCTCTGGCGCACCCACCGCCAAGAATCTCAGGTGAAAGCAAACCAATCGCTAAGCTAAGTTTCTAAACCTCTCACCACAACATCGCCATGCCGATTCTCTCCTCTAACTCCAATTACCAATGGATCCTCTCCCTCAAGATCTTCCTGATCTCCACTGGAGTTTTGTCCATGGCCGTCTTTCTCAAGTTCTCTGTTCCACTGGTGGCTGATTTCCTCGTCTCTGAAATCCCTTCCATCTGGACATGCTTCATCTCCTGGTTAAGACCTCCTTATCTCTACTTGGTTATTAATTGCATAATCATCAGTATTGTTGCCTCTTCTAAGCTCCAGCAGAAGCTGGAGGATGGGGAATCCGTGCTATCCGTTCCGGAGACGCTTTCTCCTCCGCCCCTCGCTAAGATTTCCTCTGAGTCTGACTATGTTGTTTGTGGCGGTACCGATATTTTGAATGGATACTGTTACAACAATGCGAATCAGAACGCCGTCACTAAGATTGCGGACCTTCACATTGACGAATCGAATGGCGTGTACGGACGGATGATGGTAGAACCTGGGGTTTCGGAGATGGAGAAGAAAGGGGAGAATGATTCTTTGATTCTGACAACAGCTGCTGATGAGACTGCTATGTCTAGTCCGATGACGAACGCTCTGCATAGGAAAGATTCCGTCGGACTTTTGTTTTCAAACGAGAAGGAGAAACCGCCGGTTTCTTCAAGAATCGGCCAACGGAAACTCGTGAAAGCCAGTCCTGAAGGTTCGAGCTCTATTTCTTTCTGTCTATCTCTGTTCTTGTGAATTTATGAACACGGATTCTGGTAGCTAGTCATGTGAATCAACTTTAGAGAATGTATAAATTCTAAGATGAGTTTCAGAGTATCGTGCCGGTAAAGATCGCCGGAGCCTATCGTTACACACAGCACAAAATCAGATGGAATTTTTTTTTTTTTTTGGGATAAATTTTTTTGTAAAAGCTGCCAAAAACAGCAAGCCTTTCGGTGGTAGGTCACAGAGCCGACTTTATTTCCCATGCCGTTAAAAGGCTCCAACGGAACTAAGTTTCCATCCCAAATACCGAAACTACCCTTGAAAGGGATTTTATTCTAAAATGGCAAAAGAAGTAATTATAATGAAGGTCATGGGGTTTTGTTTGGCGCGCAGGGAAGCCGTTGGGGGTTTCAAAACCGAAGAGGCAGGACACGCTGGAGAGCACGTGGAGGACAATAACGGAGGGGAGGTCAATGCCGTTAACGAGGCACTTGAGGAAGTCGGACACGTGGGAGTCACAGGGGCGAAGGGCCAACATGGCGGTGGATCCAGCGACGCCGCCTTCGAAGGTGATGACGAAGTCAGAGACGTTCAAGGACCGGAGCAACGTGGGGTCACCGAGTCCGTCGCCGGGGGGGTCGGGGAGGCTGAAGAGAGAACCGTCGCTGACCCAGGAGGAGTTGAACCGGCGAGTTGAGGCGTTCATAAAAAAGTTCAACGATGAGATGAGGTTGCAGAGGCAGGAATCGCTGAAGCAGTACCAGGAGATGGTGGGCAGTAGAGCCAACTAACTAGCTGTGTGTATATATTTTTTTTTTTACTCCAAATTGACCCATTTCCCTTTTTCCCAAATTTTAAATAGGCATATCAGATAAGGAATCAAGGATTAGGGTTTTTATTTTTTATTTTTTCAGTTTAGATTTCTTTTTGACACACCATATGAACTTGGTGTTCCTTCGGGGTGATGTTTATATTAAATATTTATATCTTCTTTTTTTTTCTTTTCCTTTCATTAAAAGTCTTGTGTTG

mRNA sequence

ACGAACACTCTCCCGCTCCCCAAACGAAAGGAAGCTCTGGCGCACCCACCGCCAAGAATCTCAGGTGAAAGCAAACCAATCGCTAAGCTAAGTTTCTAAACCTCTCACCACAACATCGCCATGCCGATTCTCTCCTCTAACTCCAATTACCAATGGATCCTCTCCCTCAAGATCTTCCTGATCTCCACTGGAGTTTTGTCCATGGCCGTCTTTCTCAAGTTCTCTGTTCCACTGGTGGCTGATTTCCTCGTCTCTGAAATCCCTTCCATCTGGACATGCTTCATCTCCTGGTTAAGACCTCCTTATCTCTACTTGGTTATTAATTGCATAATCATCAGTATTGTTGCCTCTTCTAAGCTCCAGCAGAAGCTGGAGGATGGGGAATCCGTGCTATCCGTTCCGGAGACGCTTTCTCCTCCGCCCCTCGCTAAGATTTCCTCTGAGTCTGACTATGTTGTTTGTGGCGGTACCGATATTTTGAATGGATACTGTTACAACAATGCGAATCAGAACGCCGTCACTAAGATTGCGGACCTTCACATTGACGAATCGAATGGCGTGTACGGACGGATGATGGTAGAACCTGGGGTTTCGGAGATGGAGAAGAAAGGGGAGAATGATTCTTTGATTCTGACAACAGCTGCTGATGAGACTGCTATGTCTAGTCCGATGACGAACGCTCTGCATAGGAAAGATTCCGTCGGACTTTTGTTTTCAAACGAGAAGGAGAAACCGCCGGTTTCTTCAAGAATCGGCCAACGGAAACTCGTGAAAGCCAGTCCTGAAGATGAGTTTCAGAGTATCGTGCCGGTCACAGAGCCGACTTTATTTCCCATGCCGTTAAAAGGCTCCAACGGAACTAAGGAAGCCGTTGGGGGTTTCAAAACCGAAGAGGCAGGACACGCTGGAGAGCACGTGGAGGACAATAACGGAGGGGAGGTCAATGCCGTTAACGAGGCACTTGAGGAAGTCGGACACGTGGGAGTCACAGGGGCGAAGGGCCAACATGGCGGTGGATCCAGCGACGCCGCCTTCGAAGGTGATGACGAAGTCAGAGACGTTCAAGGACCGGAGCAACGTGGGGTCACCGAGTCCGTCGCCGGGGGGGTCGGGGAGGCTGAAGAGAGAACCGTCGCTGACCCAGGAGGAGTTGAACCGGCGAGTTGAGGCGTTCATAAAAAAGTTCAACGATGAGATGAGGTTGCAGAGGCAGGAATCGCTGAAGCAGTACCAGGAGATGGTGGGCAGTAGAGCCAACTAACTAGCTGTGTGTATATATTTTTTTTTTTACTCCAAATTGACCCATTTCCCTTTTTCCCAAATTTTAAATAGGCATATCAGATAAGGAATCAAGGATTAGGGTTTTTATTTTTTATTTTTTCAGTTTAGATTTCTTTTTGACACACCATATGAACTTGGTGTTCCTTCGGGGTGATGTTTATATTAAATATTTATATCTTCTTTTTTTTTCTTTTCCTTTCATTAAAAGTCTTGTGTTG

Coding sequence (CDS)

ATGCCGATTCTCTCCTCTAACTCCAATTACCAATGGATCCTCTCCCTCAAGATCTTCCTGATCTCCACTGGAGTTTTGTCCATGGCCGTCTTTCTCAAGTTCTCTGTTCCACTGGTGGCTGATTTCCTCGTCTCTGAAATCCCTTCCATCTGGACATGCTTCATCTCCTGGTTAAGACCTCCTTATCTCTACTTGGTTATTAATTGCATAATCATCAGTATTGTTGCCTCTTCTAAGCTCCAGCAGAAGCTGGAGGATGGGGAATCCGTGCTATCCGTTCCGGAGACGCTTTCTCCTCCGCCCCTCGCTAAGATTTCCTCTGAGTCTGACTATGTTGTTTGTGGCGGTACCGATATTTTGAATGGATACTGTTACAACAATGCGAATCAGAACGCCGTCACTAAGATTGCGGACCTTCACATTGACGAATCGAATGGCGTGTACGGACGGATGATGGTAGAACCTGGGGTTTCGGAGATGGAGAAGAAAGGGGAGAATGATTCTTTGATTCTGACAACAGCTGCTGATGAGACTGCTATGTCTAGTCCGATGACGAACGCTCTGCATAGGAAAGATTCCGTCGGACTTTTGTTTTCAAACGAGAAGGAGAAACCGCCGGTTTCTTCAAGAATCGGCCAACGGAAACTCGTGAAAGCCAGTCCTGAAGATGAGTTTCAGAGTATCGTGCCGGTCACAGAGCCGACTTTATTTCCCATGCCGTTAAAAGGCTCCAACGGAACTAAGGAAGCCGTTGGGGGTTTCAAAACCGAAGAGGCAGGACACGCTGGAGAGCACGTGGAGGACAATAACGGAGGGGAGGTCAATGCCGTTAACGAGGCACTTGAGGAAGTCGGACACGTGGGAGTCACAGGGGCGAAGGGCCAACATGGCGGTGGATCCAGCGACGCCGCCTTCGAAGGTGATGACGAAGTCAGAGACGTTCAAGGACCGGAGCAACGTGGGGTCACCGAGTCCGTCGCCGGGGGGGTCGGGGAGGCTGAAGAGAGAACCGTCGCTGACCCAGGAGGAGTTGAACCGGCGAGTTGA

Homology

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BLAST of CmoCh04G009840 vs. TrEMBL
Match: A0A0A0L2K5_CUCSA (Fiber expressed protein OS=Cucumis sativus GN=Csa_3G099710 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 2.7e-73
Identity = 154/222 (69.37%), Postives = 179/222 (80.63%), Query Frame = 1


Query: 1   MPILSSNSNYQWILSLKIFLISTGVLSMAVFLKFSVPLVADFLVSEIPSIWTCFISWLRP 60
           MPILSSN  Y WILSLKI LISTG+LSMA+FLK SVPL+ADF+ SEIPSIWT F+SWL P
Sbjct: 1   MPILSSN--YHWILSLKILLISTGLLSMALFLKLSVPLLADFVFSEIPSIWTSFLSWLTP 60

Query: 61  PYLYLVINCIIISIVASSKLQQKLEDGESVLSVPETLSPPPLAKISSESDYVVCGGTDIL 120
           PYLYL+INCIIISIVASSKLQ  LE+      +PET +PPP+ KIS  SDY VCG +DIL
Sbjct: 61  PYLYLLINCIIISIVASSKLQSNLEND----PIPETPAPPPVTKIS--SDYAVCGSSDIL 120

Query: 121 NGYCYNNANQNAVTKIADLHIDESNGVYGRMMVEPGVSEMEKKGENDSLILTTAADETAM 180
           NGY   NANQN VTK++DL ID+SN VYGR + E  VSEMEKKGENDS+I     DE+++
Sbjct: 121 NGYSSYNANQNVVTKVSDLEIDDSNEVYGR-IEESRVSEMEKKGENDSMIAMKGGDESSV 180

Query: 181 SSPMTNALHRKDSVGLLFSNEKEKPPVSSRIGQRKLVKASPE 223
            S +TN L RKDS+G+LFSN++EKPPVSSR GQRK VK+SPE
Sbjct: 181 LSSITNTLPRKDSIGVLFSNKEEKPPVSSRFGQRKFVKSSPE 213

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BLAST of CmoCh04G009840 vs. TrEMBL
Match: M5X0W3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007900mg PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.7e-35
Identity = 102/227 (44.93%), Postives = 144/227 (63.44%), Query Frame = 1


Query: 1   MPILSSNSNYQWILSLKIFLISTGVLSMAVFLKFSVPLVADFLVSEIPSIWTCFISWLRP 60
           MP+ SSN+   W+LSLK+ LISTG++SMAV LK S P+V+D + S++PS+W+  +SWLRP
Sbjct: 1   MPMSSSNT---WLLSLKVVLISTGLVSMAVALKLSAPVVSDIVASQVPSLWSSALSWLRP 60

Query: 61  PYLYLVINCIIISIVASSKLQQKLEDGE-SVLSVPETLSPPPLAKISSESDYVVCGGTDI 120
           PYLY++INCIIISIVASSKL  + ED    +++VP  ++P  ++     +DY       +
Sbjct: 61  PYLYILINCIIISIVASSKLHPRPEDSSPEIIAVPAPVTPVKISGEVVRTDYAAYDAV-V 120

Query: 121 LNGYCYNNANQNAVTKIADLHIDESNGVYGRMMVEPGVSEM---EKKGENDSLILTTAAD 180
           LN Y Y   + N + K+ D + + + GV    +VE  +SE    EKK ++D        D
Sbjct: 121 LNEYGY---DANVLPKVPDSY-ESAGGV----VVEARISEAAENEKKEKSDDREAVDGGD 180

Query: 181 ETA-MSSPMTNALHRKDSVGLLFSNEKEKPPVSSRIGQRKLVKASPE 223
           E   +S+P+   L RKDS+   + NE EKPPVSSR G RK  +ASPE
Sbjct: 181 EAVRVSTPVRTRLQRKDSME-FWLNENEKPPVSSRFGHRKSARASPE 214

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BLAST of CmoCh04G009840 vs. TrEMBL
Match: W9RGE1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018748 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.9e-35
Identity = 104/224 (46.43%), Postives = 134/224 (59.82%), Query Frame = 1


Query: 1   MPILSSNSNYQWILSLKIFLISTGVLSMAVFLKFSVPLVADFLVSEIPSIWTCFISWLRP 60
           M + S+N +  WIL LK+ LISTGVLSMAV LK SVP+V DF+ SE+PS W+  +SWL+P
Sbjct: 1   MAMYSANPSNNWILPLKVVLISTGVLSMAVALKLSVPVVVDFVASEVPSFWSFVLSWLKP 60

Query: 61  PYLYLVINCIIISIVASSKLQQKLED-GESVLSVPETLSPPPLAKISSESDYVVCGGTDI 120
           PYLY++IN IIISIVASSKL QKLED   S   V  T     ++     +DY V  G  +
Sbjct: 61  PYLYVLINGIIISIVASSKLHQKLEDPSTSPSHVAITAGEVKISGGEVRTDYAVYSGV-V 120

Query: 121 LNGYCYNNANQNAVTKIADLHIDESNGVYGRMMVEPGVSEMEKKGENDSLILTTAADETA 180
           L GY Y   +   V K++ +  +         +VE  VS  EK+   ++++   AA E  
Sbjct: 121 LTGYGY---DPGEVAKVSAMTAESVVYAPAARVVEASVSAAEKEEREEAIV---AASE-- 180

Query: 181 MSSPMTNALHRKD-SVGLLFSNEKEKPPVSSRIGQRKLVKASPE 223
                 N L RKD S+   F +E EKPPVS+R G RK VKASPE
Sbjct: 181 -----RNGLQRKDSSLEYFFPSENEKPPVSARFGHRKAVKASPE 210

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BLAST of CmoCh04G009840 vs. TrEMBL
Match: K4CH39_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.1e-25
Identity = 94/239 (39.33%), Postives = 131/239 (54.81%), Query Frame = 1


Query: 1   MPILSSNSNYQWILSLKIFLISTGVLSMAVFLKFSVPLVADFLVSEIPSIWTCFISWLRP 60
           M IL  +S+   +LS+K+FLIST VLS A+ LK S P+V +F VSE+PSIW   +SWL+P
Sbjct: 1   MAILFQSSSSS-MLSIKVFLISTTVLSAAIMLKVSAPVVTEFAVSEVPSIWNGVVSWLKP 60

Query: 61  PYLYLVINCIIISIVASSKLQQKLEDGESVLSVPETLSPP------PLAKISSESDYVVC 120
           PYLYLVINCIII+IVASSKLQ KL++  S   VP  +SP       P+  +   +DY   
Sbjct: 61  PYLYLVINCIIITIVASSKLQNKLDENSS--PVPAVVSPENSSQFHPIKDVRPVTDYYTP 120

Query: 121 GGTDILNGYCYNNANQNAVTKIADLHIDESNGVYGRM-----MVEPGVSEMEKKGENDSL 180
              D+      N A +     I  ++   + GVY        +V P +SE   KG + + 
Sbjct: 121 VLHDLNGSVLKNQAVEAEARPI--VYEYPTAGVYDAKVEKLPVVNPYISE---KGTSFNT 180

Query: 181 I-----LTTAADETAMSSPMTNALHRKDSVGLLFS-NEKEKPPVSSRIGQRKLVKASPE 223
                 +    D+  +S      + R+DS+    S N  EKPP S+R   R+ VK++PE
Sbjct: 181 YPEPNDVVAEKDDFVISKSSWAPVMRQDSIDYSISGNSAEKPPASARFAHRRNVKSTPE 231

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BLAST of CmoCh04G009840 vs. TrEMBL
Match: M1BP37_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019285 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.0e-24
Identity = 92/226 (40.71%), Postives = 123/226 (54.42%), Query Frame = 1


Query: 13  ILSLKIFLISTGVLSMAVFLKFSVPLVADFLVSEIPSIWTCFISWLRPPYLYLVINCIII 72
           +LS+KIFLIST VLS A+ LK S P+V DF VSE+PSIW   +SWL+PPYLYLVINCIII
Sbjct: 12  MLSIKIFLISTTVLSAAIMLKVSAPVVTDFAVSEVPSIWNGVVSWLKPPYLYLVINCIII 71

Query: 73  SIVASSKLQQKLEDGES---VLSVPETLSP-PPLAKISSESDYVVCGGTDILNGYCYNNA 132
           +IVASSKLQ KL++  S    +  PE LS   P+  +   +DY      D LNG    N 
Sbjct: 72  TIVASSKLQNKLDENSSPVPAIVSPENLSQFHPIKDVRPVTDYYSPALHD-LNGSVLKN- 131

Query: 133 NQNAVTKIADLHIDESNGVYGRM-----MVEPGVSEMEKKGENDSLI------LTTAADE 192
              AV     ++   + GVY        +V P   E +     ++        +    D+
Sbjct: 132 --QAVEARPIVYEYPTAGVYDAKVEKVPVVNPYTPEKDISFNVNAFTYPEPNEVVAEKDD 191

Query: 193 TAMSSPMTNALHRKDSVGLLFS-NEKEKPPVSSRIGQRKLVKASPE 223
             +S      + R+DS+    S N  EKPP S+R   R+ VK++PE
Sbjct: 192 FVISKSSWAPVMRQDSIDYSISGNSAEKPPASARFAHRRNVKSTPE 233

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BLAST of CmoCh04G009840 vs. TAIR10
Match: AT1G61260.1 (AT1G61260.1 Protein of unknown function (DUF761))

HSP 1 Score: 85.9 bits (211), Expect = 5.4e-17
Identity = 76/239 (31.80%), Postives = 112/239 (46.86%), Query Frame = 1


Query: 12  WILSLKIFLISTGVLSMAVFLKFSVPLVADFLVSEIPSIWTCFISWLRPPYLYLVINCII 71
           W+++ K  LIS+GV ++A+ LK SVP+  DF VS  P +W+  +SWL+PPYLY+V N II
Sbjct: 4   WMMTTKAVLISSGVATVALLLKLSVPVAVDFSVSRAPILWSSLLSWLKPPYLYVVTNGII 63

Query: 72  ISIVASSKLQQKLEDGESVLSVPETLSPPPLAKISSESDYVVCGGTDILNGYCYNN---- 131
           I+IVASSK  +   D +                   E + VV GG     GY        
Sbjct: 64  ITIVASSKYYRSHHDRD------------------EEDEIVVYGG----GGYKIQTEEPI 123

Query: 132 ANQN-AVTKIADLHIDESNGVYGRMMVEPGVSEMEKKG---------ENDSLIL---TTA 191
            NQ+ A  +I ++   ++   +G ++      E+E +          E +  I+    TA
Sbjct: 124 VNQHQASPRILEVKDLDTGAHFGFVVANLEAEELESEAVTAVVFDDEEEEKKIIDSAATA 183

Query: 192 ADETAMSSPMTNALHRKDSV-------GLLFSNEK----EKPPVSSRIGQRKLVKASPE 223
            DE          +   D V        ++  +E     EKP V+SR G RKL+KAS E
Sbjct: 184 EDEIEEELKSVIMVENSDLVESDVIPPPMMIESENLPPIEKPLVTSRFGHRKLMKASQE 220

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BLAST of CmoCh04G009840 vs. TAIR10
Match: AT1G11220.1 (AT1G11220.1 Protein of unknown function (DUF761))

HSP 1 Score: 76.3 bits (186), Expect = 4.3e-14
Identity = 88/323 (27.24%), Postives = 134/323 (41.49%), Query Frame = 1


Query: 13  ILSLKIFLISTGVLSMAVFLKFSVPLVADFLVSEIPSIWTCFISWLRPPYLYLVINCIII 72
           ++S+K  LI+ G++++++FLK SVP+  DF VS  P  W+ F+SWL+PPYL++ IN II 
Sbjct: 5   MISIKAALITAGIVAVSLFLKSSVPIAVDFSVSRFPIFWSSFLSWLKPPYLFVAINVIIT 64

Query: 73  SIVASSKLQQKL-----EDGESVL----SVPETLSPPP---LAKISSESDYVVCGGTDIL 132
            I+ASSK  Q +     ED E +L    ++P  ++  P   L  + ++ D+V    + IL
Sbjct: 65  IIMASSKFYQSVGEQDGEDDEILLGGEYTIPNVITQAPPRRLVDLDADFDFVATVQSPIL 124

Query: 133 NGYCYNNANQNAVTKIADLHIDESNGVYGRMMVEPGVSEMEKKGENDSLILTTAADETAM 192
                      A  +I ++  +E               EM   G+      T   DE A+
Sbjct: 125 ----------VAEVEILEVVFEE--------------KEMAISGQ------TNGGDEFAV 184

Query: 193 SSPMTNALHRKDSVGLLFSNEKEKPPVSSRIGQRKLVKASPEDEFQSIVPVTEPTLFPMP 252
                N    ++S  L      EKP VS+R G RK +KAS                    
Sbjct: 185 MRSELNQPIMEESENL---PPAEKPLVSARSGHRKPIKASS------------------- 244

Query: 253 LKGSNGTKEAVGGFKTEEAGHAGEHVEDNNGGEVNAVNEALEEVGHVGVTGAKGQHGGGS 312
            KG N  K+A+   K            +N    +    ++     H   T   G + GG 
Sbjct: 245 -KGVNRKKKALKVVKPNR-----HETLENTWNMITEEGKSTPLTCHYRKTSMSGLNAGGD 269

Query: 313 SDAAFEGDDEVRDVQGPEQRGVT 324
                   +  RDV    Q   T
Sbjct: 305 VKPVLRKAETFRDVTNYRQSSPT 269

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BLAST of CmoCh04G009840 vs. TAIR10
Match: AT5G54300.1 (AT5G54300.1 Protein of unknown function (DUF761))

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-09
Identity = 72/242 (29.75%), Postives = 114/242 (47.11%), Query Frame = 1


Query: 1   MPILSSNSNYQWILSLKIFLISTGVLSMAVFLKFSVPLVADFLVSEIPSIWTCFISWLRP 60
           MP+L   S+++   ++ I     GV S+A  +  +VP V+ F+VS  P I+   +  L+P
Sbjct: 1   MPLLLPTSSFKTTATVVI----AGVSSIATAMILTVPSVSHFVVSCFPIIYDNTVFLLKP 60

Query: 61  PYLYLVINCIIISIVASSKLQQK---LEDGESVLSVPETLSPPPL---AKISSESDYVVC 120
           PYLYLVIN II+ I+A+SKL  K   ++D E    + E ++P P+     + S+ D    
Sbjct: 61  PYLYLVINSIIVCIIATSKLTHKSSSVDDSE----ISEVVTPIPIPVPVHLPSDIDSGYL 120

Query: 121 GGTDILNGYCYNNANQNAVTKIADLHIDESNGVYGRMMVEPGVSEMEK-KGENDSLILTT 180
               +++ Y         V KI D+ I   N     +   P V E EK K  +DS    T
Sbjct: 121 NVVHVVSDY------TGFVEKIDDVSI---NPTVEAIRKFPEVQEAEKSKESSDSPEPET 180

Query: 181 AADETAMSSPMTNALHRKDSVGLLFSNEKEKPPVSSRIGQRKLVKASPE-DEFQSIVPVT 235
              +    SP  + L           +   KPP   R  Q+K +K++ E    ++ + VT
Sbjct: 181 EKPKLKNDSPEISIL----------KHSTRKPP---RFNQQKSLKSNSEGGNKKTALGVT 212

[Close]

BLAST of CmoCh04G009840 vs. TAIR10
Match: AT1G11210.1 (AT1G11210.1 Protein of unknown function (DUF761))

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-07
Identity = 30/65 (46.15%), Postives = 45/65 (69.23%), Query Frame = 1


Query: 16 LKIFLISTGVLSMAVFLKFSVPLVADFLVSEIPSIWTCFISWLRPPYLYLVINCIIISIV 75
          +K  LISTGV++ A+ LK  VP+  DF  S+ P I + F++WL+PPYLY++ N III + 
Sbjct: 5  MKAVLISTGVVATAMHLKVIVPVAMDF--SQNPIILSSFLTWLKPPYLYVITNVIIIVVG 64

Query: 76 ASSKL 81
           S ++
Sbjct: 65 VSYRI 67

[Close]

BLAST of CmoCh04G009840 vs. TAIR10
Match: AT1G11230.2 (AT1G11230.2 Protein of unknown function (DUF761))

HSP 1 Score: 54.3 bits (129), Expect = 1.7e-07
Identity = 28/72 (38.89%), Postives = 50/72 (69.44%), Query Frame = 1


Query: 16 LKIFLISTGVLS-MAVFLKFSVPLVADFLVSEIPSIWTCFISWLRPPYLYLVINCIIISI 75
          +K  LISTG+++ M++FLK  +P+   F +S   ++W+ F+ WL+PPYL++ +N +I  I
Sbjct: 7  IKAVLISTGIITAMSMFLKVFLPVTLYFSLS-FSTLWSSFLPWLKPPYLFVFVNVMITII 66

Query: 76 VASSKLQQKLED 87
          +ASS+  + + D
Sbjct: 67 IASSRYYRSIGD 77

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BLAST of CmoCh04G009840 vs. NCBI nr
Match: gi|659102740|ref|XP_008452289.1| (PREDICTED: uncharacterized protein LOC103493359 [Cucumis melo])

HSP 1 Score: 285.8 bits (730), Expect = 1.0e-73
Identity = 154/222 (69.37%), Postives = 181/222 (81.53%), Query Frame = 1


Query: 1   MPILSSNSNYQWILSLKIFLISTGVLSMAVFLKFSVPLVADFLVSEIPSIWTCFISWLRP 60
           MPILSSN  Y WILSLKI  ISTGVLSMA+FLK SVP+VADF++SEIPSIWT F+SWL P
Sbjct: 1   MPILSSN--YHWILSLKILFISTGVLSMALFLKLSVPVVADFVLSEIPSIWTSFLSWLTP 60

Query: 61  PYLYLVINCIIISIVASSKLQQKLEDGESVLSVPETLSPPPLAKISSESDYVVCGGTDIL 120
           PYLYL+INCIIISIVASSKLQ KLE+      +PET +PPP++KI   SDY VCGG+DIL
Sbjct: 61  PYLYLLINCIIISIVASSKLQSKLEND----PIPETPAPPPVSKI--PSDYAVCGGSDIL 120

Query: 121 NGYCYNNANQNAVTKIADLHIDESNGVYGRMMVEPGVSEMEKKGENDSLILTTAADETAM 180
           NGY   NANQN VTK++DL ID+SN +YG+ + E  V EMEKKGENDS+I    +DE+++
Sbjct: 121 NGYSSYNANQNVVTKVSDLEIDDSNELYGQ-IEESRVFEMEKKGENDSVIAMKGSDESSV 180

Query: 181 SSPMTNALHRKDSVGLLFSNEKEKPPVSSRIGQRKLVKASPE 223
            SP+TN L R DS+G+LFSN+KEKPPVSSR GQRK VKASPE
Sbjct: 181 LSPITNTLPRNDSIGVLFSNKKEKPPVSSRFGQRKFVKASPE 213

[Close]

BLAST of CmoCh04G009840 vs. NCBI nr
Match: gi|778676267|ref|XP_004149308.2| (PREDICTED: uncharacterized protein LOC101210213 [Cucumis sativus])

HSP 1 Score: 283.9 bits (725), Expect = 3.8e-73
Identity = 154/222 (69.37%), Postives = 179/222 (80.63%), Query Frame = 1


Query: 1   MPILSSNSNYQWILSLKIFLISTGVLSMAVFLKFSVPLVADFLVSEIPSIWTCFISWLRP 60
           MPILSSN  Y WILSLKI LISTG+LSMA+FLK SVPL+ADF+ SEIPSIWT F+SWL P
Sbjct: 1   MPILSSN--YHWILSLKILLISTGLLSMALFLKLSVPLLADFVFSEIPSIWTSFLSWLTP 60

Query: 61  PYLYLVINCIIISIVASSKLQQKLEDGESVLSVPETLSPPPLAKISSESDYVVCGGTDIL 120
           PYLYL+INCIIISIVASSKLQ  LE+      +PET +PPP+ KIS  SDY VCG +DIL
Sbjct: 61  PYLYLLINCIIISIVASSKLQSNLEND----PIPETPAPPPVTKIS--SDYAVCGSSDIL 120

Query: 121 NGYCYNNANQNAVTKIADLHIDESNGVYGRMMVEPGVSEMEKKGENDSLILTTAADETAM 180
           NGY   NANQN VTK++DL ID+SN VYGR + E  VSEMEKKGENDS+I     DE+++
Sbjct: 121 NGYSSYNANQNVVTKVSDLEIDDSNEVYGR-IEESRVSEMEKKGENDSMIAMKGGDESSV 180

Query: 181 SSPMTNALHRKDSVGLLFSNEKEKPPVSSRIGQRKLVKASPE 223
            S +TN L RKDS+G+LFSN++EKPPVSSR GQRK VK+SPE
Sbjct: 181 LSSITNTLPRKDSIGVLFSNKEEKPPVSSRFGQRKFVKSSPE 213

[Close]

BLAST of CmoCh04G009840 vs. NCBI nr
Match: gi|1009110661|ref|XP_015896755.1| (PREDICTED: uncharacterized protein LOC107430433 [Ziziphus jujuba])

HSP 1 Score: 172.6 bits (436), Expect = 1.2e-39
Identity = 110/233 (47.21%), Postives = 143/233 (61.37%), Query Frame = 1


Query: 1   MPILSSNSNYQWILSLKIFLISTGVLSMAVFLKFSVPLVADFLVSEIPSIWTCFISWLRP 60
           M I SS S   W  SLK+ LISTGVLSMA  +K SVP+V DF+ +E+PSIW+  +SWLRP
Sbjct: 1   MAIYSSTSTTNWTFSLKLLLISTGVLSMAFVMKLSVPVVTDFVATEVPSIWSVVLSWLRP 60

Query: 61  PYLYLVINCIIISIVASSKLQQKLEDGESVLSVPETLSPPPL----AKISS---ESDYVV 120
           PYLY++INCIIISIVASSKLQQK+E   +    PE + P P+     K+S     +DY  
Sbjct: 61  PYLYILINCIIISIVASSKLQQKVEYYPA--HPPEMVVPQPVVAEAVKVSGSDVRTDYAE 120

Query: 121 CGGTDILNGYCYNNANQNAVTKIAD----LHIDESNGVYGRMMVEPGVSEMEKKGENDSL 180
             G  +L GY Y   + NA+ K+ D       D+     G  +VE  VS++++   ND  
Sbjct: 121 AYGGAVLTGYGY---DANAMAKVYDGSSVAVADDVQRWAG--VVEKTVSDVKEMVINDQT 180

Query: 181 ILTTAADETAMSSPMTNALHRKDSVGLLFSNEKEKPPVSSRIGQRKLVKASPE 223
           +     D   +S+ +   L RKDS+ +LFSN  EKPPVS+R G RK VKASPE
Sbjct: 181 VAKGGDDVAVVSASVGKGLQRKDSLEVLFSNGNEKPPVSARFGHRKAVKASPE 226

[Close]

BLAST of CmoCh04G009840 vs. NCBI nr
Match: gi|694412555|ref|XP_009334589.1| (PREDICTED: uncharacterized protein LOC103927396 [Pyrus x bretschneideri])

HSP 1 Score: 160.6 bits (405), Expect = 4.9e-36
Identity = 107/226 (47.35%), Postives = 148/226 (65.49%), Query Frame = 1


Query: 4   LSSNSNYQWILSLKIFLISTGVLSMAVFLKFSVPLVADFLVSEIPSIWTCFISWLRPPYL 63
           +S++S+  W+L+LK+ LISTGV+SMAV LK S PLVAD ++S++PS+W+  ISWLRPPYL
Sbjct: 1   MSTSSSNTWLLTLKVALISTGVVSMAVGLKLSSPLVADAVISQVPSLWSSAISWLRPPYL 60

Query: 64  YLVINCIIISIVASSKLQQKLEDGESVLSVPETLSPPPLA--KISS--ESDYVVCGGTDI 123
           Y++INCIIISIVASSKL  K ED     + PE +  PPL   KIS+  +SDY    G  I
Sbjct: 61  YILINCIIISIVASSKLHPKPEDSHPE-TEPELVMVPPLTTEKISTQIQSDYAAYDGV-I 120

Query: 124 LNGYCYNNANQNAVTKIADLHIDESNGVY--GRMMVEPGVSEMEKKGENDSLILTTAADE 183
           L+ Y Y   + N + KI+D +   + GV    ++ V   V + EK+ +   +      DE
Sbjct: 121 LSEYGY---DANVLPKISDSYGGGTGGVVLEEKVWVPEAVKKKEKREDRAGI---DGGDE 180

Query: 184 TAM-SSPMTNALHRKDSVGLLFSNEKEKPPVSSRIGQRKLVKASPE 223
            A+ S+P+  +L RK S+   + NE +KPPVS+RIG RK VK+SPE
Sbjct: 181 NALVSTPVKTSLQRKGSME-FWLNENQKPPVSARIGHRKSVKSSPE 217

[Close]

BLAST of CmoCh04G009840 vs. NCBI nr
Match: gi|657954187|ref|XP_008366538.1| (PREDICTED: uncharacterized protein LOC103430179 [Malus domestica])

HSP 1 Score: 159.5 bits (402), Expect = 1.1e-35
Identity = 108/225 (48.00%), Postives = 144/225 (64.00%), Query Frame = 1


Query: 4   LSSNSNYQWILSLKIFLISTGVLSMAVFLKFSVPLVADFLVSEIPSIWTCFISWLRPPYL 63
           +S++S+  W+L+LK+ LISTGV+SMAV LK S PLVAD + S++PS+W+  ISWLRPPYL
Sbjct: 1   MSTSSSNNWLLTLKVALISTGVVSMAVGLKLSSPLVADAVTSQVPSLWSSAISWLRPPYL 60

Query: 64  YLVINCIIISIVASSKLQQKLEDGESVLSVPETLSPPPLA--KISS--ESDYVVCGGTDI 123
           Y++INCIIISIVASSKL  K ED     + PE +  PPL   KIS+  +SDY    G  I
Sbjct: 61  YILINCIIISIVASSKLHPKPEDSHPE-TEPELVMVPPLTTEKISTQIQSDYAAYDGV-I 120

Query: 124 LNGYCYNNANQNAVTKIADLHIDESNGVYGRMMVEPGVSEMEKKGEN--DSLILTTAADE 183
           L+ Y Y   + N + KI   +   + GV   +  +  VSE  KK EN  D   +    + 
Sbjct: 121 LSEYGY---DANVLPKIXXSYGGGTGGVV--LEEKVWVSEAVKKKENREDRAAIDGGDEN 180

Query: 184 TAMSSPMTNALHRKDSVGLLFSNEKEKPPVSSRIGQRKLVKASPE 223
             +S+P+  +L RK S+   + NE +KPPVS+RIG RK VKASPE
Sbjct: 181 ALVSTPVKTSLQRKGSME-FWLNENQKPPVSARIGHRKSVKASPE 217

The following BLAST results are available for this feature:

BLAST of CmoCh04G009840 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G009840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2K5_CUCSA	2.7e-73	69.37	Fiber expressed protein OS=Cucumis sativus GN=Csa_3G099710 PE=4 SV=1	[more]
M5X0W3_PRUPE	1.7e-35	44.93	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007900mg PE=4 SV=1	[more]
W9RGE1_9ROSA	4.9e-35	46.43	Uncharacterized protein OS=Morus notabilis GN=L484_018748 PE=4 SV=1	[more]
K4CH39_SOLLC	2.1e-25	39.33	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
M1BP37_SOLTU	1.0e-24	40.71	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019285 PE=4 SV=1	[more]

BLAST of CmoCh04G009840 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G61260.1	5.4e-17	31.80	Protein of unknown function (DUF761)	[more]
AT1G11220.1	4.3e-14	27.24	Protein of unknown function (DUF761)	[more]
AT5G54300.1	1.1e-09	29.75	Protein of unknown function (DUF761)	[more]
AT1G11210.1	1.0e-07	46.15	Protein of unknown function (DUF761)	[more]
AT1G11230.2	1.7e-07	38.89	Protein of unknown function (DUF761)	[more]

BLAST of CmoCh04G009840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102740\|ref\|XP_008452289.1\|	1.0e-73	69.37	PREDICTED: uncharacterized protein LOC103493359 [Cucumis melo]	[more]
gi\|778676267\|ref\|XP_004149308.2\|	3.8e-73	69.37	PREDICTED: uncharacterized protein LOC101210213 [Cucumis sativus]	[more]
gi\|1009110661\|ref\|XP_015896755.1\|	1.2e-39	47.21	PREDICTED: uncharacterized protein LOC107430433 [Ziziphus jujuba]	[more]
gi\|694412555\|ref\|XP_009334589.1\|	4.9e-36	47.35	PREDICTED: uncharacterized protein LOC103927396 [Pyrus x bretschneideri]	[more]
gi\|657954187\|ref\|XP_008366538.1\|	1.1e-35	48.00	PREDICTED: uncharacterized protein LOC103430179 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025520	DUF4408

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G009840.1	CmoCh04G009840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025520	Domain of unknown function DUF4408	PFAM	PF14364	DUF4408	coord: 48..80 score: 1.2
None	No IPR available	PANTHER	PTHR33098	FAMILY NOT NAMED	coord: 143..227 score: 3.1E-41coord: 12..127 score: 3.1
None	No IPR available	PANTHER	PTHR33098:SF10	T28P6.11 PROTEIN	coord: 12..127 score: 3.1E-41coord: 143..227 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G009840	Cucsa.074500	Cucumber (Gy14) v1	cgycmoB0118
CmoCh04G009840	CmaCh04G009160	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G009840	CmaCh16G008050	Cucurbita maxima (Rimu)	cmacmoB337
CmoCh04G009840	Cla011750	Watermelon (97103) v1	cmowmB674
CmoCh04G009840	Csa3G099710	Cucumber (Chinese Long) v2	cmocuB693
CmoCh04G009840	MELO3C016552	Melon (DHL92) v3.5.1	cmomeB680
CmoCh04G009840	ClCG10G006530	Watermelon (Charleston Gray)	cmowcgB615
CmoCh04G009840	CSPI03G05880	Wild cucumber (PI 183967)	cmocpiB703
CmoCh04G009840	Lsi05G006890	Bottle gourd (USVL1VR-Ls)	cmolsiB684
CmoCh04G009840	Lsi04G012810	Bottle gourd (USVL1VR-Ls)	cmolsiB678
CmoCh04G009840	Cp4.1LG14g00190	Cucurbita pepo (Zucchini)	cmocpeB667
CmoCh04G009840	Cp4.1LG01g08440	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G009840	MELO3C016552.2	Melon (DHL92) v3.6.1	cmomedB775
CmoCh04G009840	CsaV3_3G005980	Cucumber (Chinese Long) v3	cmocucB0822
CmoCh04G009840	Cla97C10G190470	Watermelon (97103) v2	cmowmbB689
CmoCh04G009840	CsGy3G006000	Cucumber (Gy14) v2	cgybcmoB393
CmoCh04G009840	Carg24073	Silver-seed gourd	carcmoB0305
CmoCh04G009840	Carg00034	Silver-seed gourd	carcmoB0923

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G009840	CmoCh16G008620	Cucurbita moschata (Rifu)	cmocmoB285

The following block(s) are covering this gene:

None