CmoCh04G009710 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G009710
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(3-deoxy-manno-octulosonate cytidylyltransferase) (2.7.7.38)
Location	Cmo_Chr04 : 4940463 .. 4941011 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTGGGAACCAACAGCCCAAGCAATCTTGGCATCAGTGCAATAACGAGCCACTCGTAGCGGGAGATCATGTCGGTTTGCTCTTCTTCTTCCTCTTCATCATCAGGCGGGTACCTCGGCAGTGCCAAAGCCTGGATCGTGCATGGGATTGTTGCCGGAATCACAATTGGCGCCGCCATCGGAGCTCGAGCTTATTTGGGTCGATCCAGAAAATTTCGGAGCCGCGTTGTCGGAATCATTCCCGCCCGATTCGCCTCTTCACGGTTCCAGGGGAAGCCTCTCGTTGAGATTCTCGGAAAGCCAATGATCCAGGTTAGTTCAATTGATTATCATTCTCAACTTTATTGTTGGTGCTGTGTCTGGATCTGTCCAGTTCGATTTATACCGCTGGAAATTTTCATTTGTTTCATATCTGATCTGGGTTTTGTTCGTTTCAATTTCATTGTTGATGTGAAAGCTATGCTTTATGCGATGGATCTACCATAAACTATAACTTATATTTTCTTAACTCTTTTAAGTAGGCTTCTGGAGATGAATTAGAGAGGAATTGA

mRNA sequence

GGTGGGAACCAACAGCCCAAGCAATCTTGGCATCAGTGCAATAACGAGCCACTCGTAGCGGGAGATCATGTCGGTTTGCTCTTCTTCTTCCTCTTCATCATCAGGCGGGTACCTCGGCAGTGCCAAAGCCTGGATCGTGCATGGGATTGTTGCCGGAATCACAATTGGCGCCGCCATCGGAGCTCGAGCTTATTTGGGTCGATCCAGAAAATTTCGGAGCCGCGTTGTCGGAATCATTCCCGCCCGATTCGCCTCTTCACGGTTCCAGGGGAAGCCTCTCGTTGAGATTCTCGGAAAGCCAATGATCCAGGCTTCTGGAGATGAATTAGAGAGGAATTGA

Coding sequence (CDS)

ATGTCGGTTTGCTCTTCTTCTTCCTCTTCATCATCAGGCGGGTACCTCGGCAGTGCCAAAGCCTGGATCGTGCATGGGATTGTTGCCGGAATCACAATTGGCGCCGCCATCGGAGCTCGAGCTTATTTGGGTCGATCCAGAAAATTTCGGAGCCGCGTTGTCGGAATCATTCCCGCCCGATTCGCCTCTTCACGGTTCCAGGGGAAGCCTCTCGTTGAGATTCTCGGAAAGCCAATGATCCAGGCTTCTGGAGATGAATTAGAGAGGAATTGA

Homology

[Close]

BLAST of CmoCh04G009710 vs. Swiss-Prot
Match: KDSB_ARATH (3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial OS=Arabidopsis thaliana GN=KDSB PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-24
Identity = 62/81 (76.54%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 1  MSVCSSSSSSSSGGYLGSAKAWIVHGIVAGITIGAAIGARAYLGRSRKFRSRVVGIIPAR 60
          MSVCSSSSSS         K WIV+GI+AG  I AAIGARAYLGRS+KFRSRVVGIIPAR
Sbjct: 1  MSVCSSSSSSQ--------KTWIVNGILAGTAIAAAIGARAYLGRSKKFRSRVVGIIPAR 60

Query: 61 FASSRFQGKPLVEILGKPMIQ 82
          +ASSRF+GKPLV+ILGKPMIQ
Sbjct: 61 YASSRFEGKPLVQILGKPMIQ 73

[Close]

BLAST of CmoCh04G009710 vs. Swiss-Prot
Match: KDSB_SYNFM (3-deoxy-manno-octulosonate cytidylyltransferase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=kdsB PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-06
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 1


Query: 52 RVVGIIPARFASSRFQGKPLVEILGKPMIQ 82
          R+VGIIPAR+ SSRF GKPLV+ILGKPMI+
Sbjct: 2  RIVGIIPARYQSSRFPGKPLVDILGKPMIR 31

[Close]

BLAST of CmoCh04G009710 vs. TrEMBL
Match: A0A0A0L2M7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104930 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.6e-30
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 1


Query: 1  MSVCSSSSSSSSGGYLGSAKAWIVHGIVAGITIGAAIGARAYLGRSRKFRSRVVGIIPAR 60
          MSVCSSSSSSSSG YLGSAKAWIVHGIVAGI IGAA GAR+YLGRS+KFRSRVVGIIPAR
Sbjct: 1  MSVCSSSSSSSSG-YLGSAKAWIVHGIVAGIAIGAAFGARSYLGRSKKFRSRVVGIIPAR 60

Query: 61 FASSRFQGKPLVEILGKPMIQ 82
          FASSRF+GKPLVEILGKPMIQ
Sbjct: 61 FASSRFEGKPLVEILGKPMIQ 80

[Close]

BLAST of CmoCh04G009710 vs. TrEMBL
Match: A0A059BN69_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01118 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-25
Identity = 68/85 (80.00%), Postives = 73/85 (85.88%), Query Frame = 1


Query: 1  MSVCSSSSSSSSGGYLGS----AKAWIVHGIVAGITIGAAIGARAYLGRSRKFRSRVVGI 60
          MS+C+SSSSSSSG    S    AKAWIVHGIVAG+ + AAIGARAYLGR+ KFRSRVVGI
Sbjct: 4  MSICTSSSSSSSGSSSSSSYSTAKAWIVHGIVAGVAVAAAIGARAYLGRAAKFRSRVVGI 63

Query: 61 IPARFASSRFQGKPLVEILGKPMIQ 82
          IPARFASSRFQGKPLV ILGKPMIQ
Sbjct: 64 IPARFASSRFQGKPLVPILGKPMIQ 88

[Close]

BLAST of CmoCh04G009710 vs. TrEMBL
Match: A0A061F6F5_THECC (Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_031454 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.6e-25
Identity = 65/81 (80.25%), Postives = 71/81 (87.65%), Query Frame = 1


Query: 1  MSVCSSSSSSSSGGYLGSAKAWIVHGIVAGITIGAAIGARAYLGRSRKFRSRVVGIIPAR 60
          MS+CSSSSSSSS     +AKAWIVH I+AG  I  AIGARAYLGR++KFRSRVVGIIPAR
Sbjct: 4  MSICSSSSSSSSSSSSSTAKAWIVHSILAGTAIAVAIGARAYLGRAKKFRSRVVGIIPAR 63

Query: 61 FASSRFQGKPLVEILGKPMIQ 82
          FASSRFQGKPLV+ILGKPMIQ
Sbjct: 64 FASSRFQGKPLVQILGKPMIQ 84

[Close]

BLAST of CmoCh04G009710 vs. TrEMBL
Match: M5WMV0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009246mg PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 7.8e-25
Identity = 66/81 (81.48%), Postives = 70/81 (86.42%), Query Frame = 1


Query: 1  MSVCSSSSSSSSGGYLGSAKAWIVHGIVAGITIGAAIGARAYLGRSRKFRSRVVGIIPAR 60
          MSVCSSSSSSSSG +  S KAWIVHGIVAG+ I  AIGAR YLG  +KFRSRVVGIIPAR
Sbjct: 4  MSVCSSSSSSSSGSW-SSTKAWIVHGIVAGVAIAVAIGARVYLGPPKKFRSRVVGIIPAR 63

Query: 61 FASSRFQGKPLVEILGKPMIQ 82
          F SSRFQGKPLV+ILGKPMIQ
Sbjct: 64 FDSSRFQGKPLVQILGKPMIQ 83

[Close]

BLAST of CmoCh04G009710 vs. TrEMBL
Match: D7KKC8_ARALL (Cytidylyltransferase family OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_474420 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.9e-24
Identity = 66/81 (81.48%), Postives = 70/81 (86.42%), Query Frame = 1


Query: 1  MSVCSSSSSSSSGGYLGSAKAWIVHGIVAGITIGAAIGARAYLGRSRKFRSRVVGIIPAR 60
          MSVCSSSSSSSS     S K WIVHGI+AG  I AAIGA AYLGRSRKFRSRVVGIIPAR
Sbjct: 1  MSVCSSSSSSSS-----SQKTWIVHGILAGAAIAAAIGASAYLGRSRKFRSRVVGIIPAR 60

Query: 61 FASSRFQGKPLVEILGKPMIQ 82
          +ASSRF+GKPLV+ILGKPMIQ
Sbjct: 61 YASSRFEGKPLVQILGKPMIQ 76

[Close]

BLAST of CmoCh04G009710 vs. TAIR10
Match: AT1G53000.1 (AT1G53000.1 Nucleotide-diphospho-sugar transferases superfamily protein)

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-25
Identity = 62/81 (76.54%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 1  MSVCSSSSSSSSGGYLGSAKAWIVHGIVAGITIGAAIGARAYLGRSRKFRSRVVGIIPAR 60
          MSVCSSSSSS         K WIV+GI+AG  I AAIGARAYLGRS+KFRSRVVGIIPAR
Sbjct: 1  MSVCSSSSSSQ--------KTWIVNGILAGTAIAAAIGARAYLGRSKKFRSRVVGIIPAR 60

Query: 61 FASSRFQGKPLVEILGKPMIQ 82
          +ASSRF+GKPLV+ILGKPMIQ
Sbjct: 61 YASSRFEGKPLVQILGKPMIQ 73

[Close]

BLAST of CmoCh04G009710 vs. NCBI nr
Match: gi|449431840|ref|XP_004133708.1| (PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 5.2e-30
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 1


Query: 1  MSVCSSSSSSSSGGYLGSAKAWIVHGIVAGITIGAAIGARAYLGRSRKFRSRVVGIIPAR 60
          MSVCSSSSSSSSG YLGSAKAWIVHGIVAGI IGAA GAR+YLGRS+KFRSRVVGIIPAR
Sbjct: 1  MSVCSSSSSSSSG-YLGSAKAWIVHGIVAGIAIGAAFGARSYLGRSKKFRSRVVGIIPAR 60

Query: 61 FASSRFQGKPLVEILGKPMIQ 82
          FASSRF+GKPLVEILGKPMIQ
Sbjct: 61 FASSRFEGKPLVEILGKPMIQ 80

[Close]

BLAST of CmoCh04G009710 vs. NCBI nr
Match: gi|700201107|gb|KGN56240.1| (hypothetical protein Csa_3G104930 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 5.2e-30
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 1


Query: 1  MSVCSSSSSSSSGGYLGSAKAWIVHGIVAGITIGAAIGARAYLGRSRKFRSRVVGIIPAR 60
          MSVCSSSSSSSSG YLGSAKAWIVHGIVAGI IGAA GAR+YLGRS+KFRSRVVGIIPAR
Sbjct: 1  MSVCSSSSSSSSG-YLGSAKAWIVHGIVAGIAIGAAFGARSYLGRSKKFRSRVVGIIPAR 60

Query: 61 FASSRFQGKPLVEILGKPMIQ 82
          FASSRF+GKPLVEILGKPMIQ
Sbjct: 61 FASSRFEGKPLVEILGKPMIQ 80

[Close]

BLAST of CmoCh04G009710 vs. NCBI nr
Match: gi|659102683|ref|XP_008452260.1| (PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 5.7e-29
Identity = 73/81 (90.12%), Postives = 77/81 (95.06%), Query Frame = 1


Query: 1  MSVCSSSSSSSSGGYLGSAKAWIVHGIVAGITIGAAIGARAYLGRSRKFRSRVVGIIPAR 60
          MSVCSSSSSSSSG YLGSAKAWIVH IVAGI IGAA GAR+YLGRS++FRSRVVGIIPAR
Sbjct: 1  MSVCSSSSSSSSG-YLGSAKAWIVHSIVAGIAIGAAFGARSYLGRSKRFRSRVVGIIPAR 60

Query: 61 FASSRFQGKPLVEILGKPMIQ 82
          FASSRF+GKPLVEILGKPMIQ
Sbjct: 61 FASSRFEGKPLVEILGKPMIQ 80

[Close]

BLAST of CmoCh04G009710 vs. NCBI nr
Match: gi|702364850|ref|XP_010060550.1| (PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial [Eucalyptus grandis])

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-25
Identity = 68/85 (80.00%), Postives = 73/85 (85.88%), Query Frame = 1


Query: 1  MSVCSSSSSSSSGGYLGS----AKAWIVHGIVAGITIGAAIGARAYLGRSRKFRSRVVGI 60
          MS+C+SSSSSSSG    S    AKAWIVHGIVAG+ + AAIGARAYLGR+ KFRSRVVGI
Sbjct: 4  MSICTSSSSSSSGSSSSSSYSTAKAWIVHGIVAGVAVAAAIGARAYLGRAAKFRSRVVGI 63

Query: 61 IPARFASSRFQGKPLVEILGKPMIQ 82
          IPARFASSRFQGKPLV ILGKPMIQ
Sbjct: 64 IPARFASSRFQGKPLVPILGKPMIQ 88

[Close]

BLAST of CmoCh04G009710 vs. NCBI nr
Match: gi|590609014|ref|XP_007021424.1| (Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 123.2 bits (308), Expect = 2.2e-25
Identity = 65/81 (80.25%), Postives = 71/81 (87.65%), Query Frame = 1


Query: 1  MSVCSSSSSSSSGGYLGSAKAWIVHGIVAGITIGAAIGARAYLGRSRKFRSRVVGIIPAR 60
          MS+CSSSSSSSS     +AKAWIVH I+AG  I  AIGARAYLGR++KFRSRVVGIIPAR
Sbjct: 4  MSICSSSSSSSSSSSSSTAKAWIVHSILAGTAIAVAIGARAYLGRAKKFRSRVVGIIPAR 63

Query: 61 FASSRFQGKPLVEILGKPMIQ 82
          FASSRFQGKPLV+ILGKPMIQ
Sbjct: 64 FASSRFQGKPLVQILGKPMIQ 84

The following BLAST results are available for this feature:

BLAST of CmoCh04G009710 vs. Swiss-Prot


Match Name	E-value	Identity	Description
KDSB_ARATH	1.9e-24	76.54	3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial OS=Arabidopsis th...	[more]
KDSB_SYNFM	1.4e-06	80.00	3-deoxy-manno-octulosonate cytidylyltransferase OS=Syntrophobacter fumaroxidans ...	[more]

BLAST of CmoCh04G009710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2M7_CUCSA	3.6e-30	92.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104930 PE=4 SV=1	[more]
A0A059BN69_EUCGR	1.2e-25	80.00	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01118 PE=3 SV=1	[more]
A0A061F6F5_THECC	1.6e-25	80.25	Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 OS=Theobro...	[more]
M5WMV0_PRUPE	7.8e-25	81.48	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009246mg PE=3 SV=1	[more]
D7KKC8_ARALL	2.9e-24	81.48	Cytidylyltransferase family OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_47...	[more]

BLAST of CmoCh04G009710 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G53000.1	1.1e-25	76.54	Nucleotide-diphospho-sugar transferases superfamily protein	[more]

BLAST of CmoCh04G009710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449431840\|ref\|XP_004133708.1\|	5.2e-30	92.59	PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial [Cucum...	[more]
gi\|700201107\|gb\|KGN56240.1\|	5.2e-30	92.59	hypothetical protein Csa_3G104930 [Cucumis sativus]	[more]
gi\|659102683\|ref\|XP_008452260.1\|	5.7e-29	90.12	PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial [Cucum...	[more]
gi\|702364850\|ref\|XP_010060550.1\|	1.7e-25	80.00	PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial [Eucal...	[more]
gi\|590609014\|ref\|XP_007021424.1\|	2.2e-25	80.25	Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003329	Cytidylyl_trans

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033468	CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process
biological_process	GO:0009103	lipopolysaccharide biosynthetic process
biological_process	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process	GO:0009555	pollen development
biological_process	GO:0009860	pollen tube growth
biological_process	GO:0008150	biological_process
cellular_component	GO:0031307	integral component of mitochondrial outer membrane
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008690	3-deoxy-manno-octulosonate cytidylyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G009710.1	CmoCh04G009710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003329	Acylneuraminate cytidylyltransferase	PFAM	PF02348	CTP_transf_3	coord: 54..81 score: 1.
None	No IPR available	PANTHER	PTHR21485	CMP-N-ACETYLNEURAMINIC ACID SYNTHASE	coord: 8..81 score: 9.7
None	No IPR available	PANTHER	PTHR21485:SF19	SUBFAMILY NOT NAMED	coord: 8..81 score: 9.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G009710	Cucsa.074750	Cucumber (Gy14) v1	cgycmoB0118
CmoCh04G009710	CmaCh16G007810	Cucurbita maxima (Rimu)	cmacmoB337
CmoCh04G009710	CmaCh04G009050	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G009710	Cla011787	Watermelon (97103) v1	cmowmB674
CmoCh04G009710	Csa3G104930	Cucumber (Chinese Long) v2	cmocuB693
CmoCh04G009710	MELO3C016515	Melon (DHL92) v3.5.1	cmomeB680
CmoCh04G009710	ClCG10G006920	Watermelon (Charleston Gray)	cmowcgB615
CmoCh04G009710	CSPI03G06160	Wild cucumber (PI 183967)	cmocpiB703
CmoCh04G009710	Lsi05G007160	Bottle gourd (USVL1VR-Ls)	cmolsiB684
CmoCh04G009710	Cp4.1LG14g00330	Cucurbita pepo (Zucchini)	cmocpeB667
CmoCh04G009710	Cp4.1LG01g08600	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G009710	MELO3C016515.2	Melon (DHL92) v3.6.1	cmomedB775
CmoCh04G009710	CsaV3_3G006290	Cucumber (Chinese Long) v3	cmocucB0822
CmoCh04G009710	Cla97C10G190780	Watermelon (97103) v2	cmowmbB689
CmoCh04G009710	Bhi11G000610	Wax gourd	cmowgoB0814
CmoCh04G009710	CsGy3G006260	Cucumber (Gy14) v2	cgybcmoB393
CmoCh04G009710	Carg00023	Silver-seed gourd	carcmoB0923
CmoCh04G009710	Carg21079	Silver-seed gourd	carcmoB0645

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G009710	CmoCh16G008440	Cucurbita moschata (Rifu)	cmocmoB285

The following block(s) are covering this gene:

None