CmoCh04G008370 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G008370
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionChromodomain-helicase-DNA-binding protein 3
LocationCmo_Chr04 : 4166756 .. 4169460 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCTGATGTTGAGCTAATGCTCCCCCGGAAAAAAGAAATCATAATTTATGCAAACATGACTGAGTATCAGAAGAACTTTCAGGAACATTTAATTAACAAGACATTGGAAAATCATCTCTCAGAGAAGGGATCAGGTGGTATAGCATTGGGTTTTAGTATATGTATGCCATGTGCTTGCCGTTGTAACTACCAATTTTCTCTATTCTTATCATTTTCTTTATGACGTTTATCATTTTTATTTCATTTTGAATTTCTTTATGAACGTCATTTTTATTCATTACAGACTCCAGTCCATTTATGTTCTGCTAATTGTGGTAATTCTTTTCTGAAAATGCAGGACATGCTTTTAAAGGAAAGCTGAATAATTTGATGGTCCAGCTTCGGAAAAATTGCAACCATCCCGACCTCTTGGAATCAGTTTTTGATAAATCTTGTATCATCCTCTTATTTTTCAATCCTTCATGGTAAAATTGTACTATACAATGTCACTTAATCCCTTGTTTTTTTCCTGACAGCTGCATATCCTCCTGTAGAGCAGATAGTTGAGCAGTGTGGAAAATTTTGCTTACTAGATAGATTGTTGACATGGTTATTTGCACGCAAGCATAAAGTAAATTGATCTGTAACTCTTGTTCTGTCATTCTTCTCAGTTTTCCTAGTTAACCTAATTGCCTACTTTGCATTTCTATTAGGTCCTTGTATTCTCTCAATGGACTAAGATTTTGGATCTCATGGAGTACTATTTTAGTGAGAAGGGATTTGAAGTTTGCAGAATCGATGGTGGTGTTAAACTAGATGAAAGAAAAAGACAGGTATGAGTTTGCACATGAAATAACCAAACAGTTTGAAGCCAGTCGTGTTGTTTGTTGTTGGTCTGTTTTTCTTTCATCCACTGCTTTTCTTATTTGCATGAAGGCCTATATGTGCCAAAACGTTGCAGTATAATGTCACTTTCAGAAATTGTTGCACTAAGGAACTATATTCCGTTATCTGTTACCATGGAGAGAATGAGCCAATTGTTGCAGAGGAAGGGGGTGTAAGATATTGATTGTTGGGCTCGTGGAGCAAGGAAGAGAGAAAGTAGGAAACTATAAAAGTAGGAACCCATATTTGGGCTCACACGATGGGAATGCATGTAGTGGGGTGGTGGTGTTAATGATTGACTTCAGTGCCCCCACAACTTTATTTCCCTTGGGCTAGTTGGCGAACTCTATGTTCTGTTGGTCCCTAATGTTCGGATGGGCACATTTGGAACAGTTGCTTTTCCTAAGGTGCTCATGAGTGTGTCCTGTTCCAGGTGCATGCCTAGCCATTCCACCTTGCTTCATATTAGTATGAGATGTCCAAAAACCTCAGTACTGCCTTGCATCTTTGTACTTTGTGCTCCTACTTTATTAGGCTCTGTTTGGGATCTTGAGAAACGTCGAGTTGAGACAGAATCAATTACTTAAATGTTACAAAATGGTAGTCTATTCAGTTATATTTAAATAATTAATTGAATCTTTTTACAAGCCGTGGTGATCTATTACCTTAATTGATTTCTTATCTTGGGTTTATTTCCTTAGCTAGACTCAAAATTTTGTGAATATTATTCCATCATGGAAGTGTTGGTGATGGGGTATCAAGGATTGCATAATTGACCAATTTAGTTTCTGTACATGTAGATCCAGGAGTTCAATGATGGTAGCAGCAAGTACAGGATATTTATTTTTAAGCACGCGGGCTGGTGGTCTGGGTATCAACCTTACTGCTGCAGATACTTGTATACTCTAATGATAGCGATTGGGTATTTTTCTTGATACTGTACTATGCATAAATACATATGTGTGTATATGTACGTATGTGCATATGTATGTATCATGTATGTAACTCACCATATTCCTTATGTACACCAGAACCCACAAATGGATTTGCAGGCCATGGATAGGTGTCACAGGATAGGTCAAACGAAACCTGTACATGTTTACAGATTTGCAACCGCTCAGTCTATAGAGGTAGCTTGCTGATGGTCTTAATCTCTCCGTGTATATTTCATGAAGTTATTCATCAGTACTCTATAATCTTTTGACGAATTGTGTTACCAGGGCCGCATTCTGAAAAGGGCCTTTAGTAAGTTGAAGCTTGAGCACGTGGTCATTGAGAAGGGGCAATTTCACCATGAACGGACAAAAGCCGACTCTGGAGCTGCTGTAGAGGTTAGTTTAAGCGTTTCAATCCATTTTATGCACTCTGATTCTTCATTGCCTACATTTGATTTTGGAAATGTCGGGACAACTAATAGAATAGTTGGGATGTGTGCAAGCCGGCTTGGACACTAGAATATAAAAATAAAATATCTTTTCGTGAGAAGTTTGTTTATGTTACTTGGTGACCAAGATTTGTTGTGCAAGCTCATTACCTGGTTGTGGTAAAAAAAAATTCATGAAGCGGATCTATTAGCACTACTAACAGAGGAAGATTCTGCTAAAGACAAGATGGTACAGGCAGACATAAGCGACGATGATTTGGAGCGCATTTTAGACCGCTCTGATCTGGTTGTCCATCTGGTTCAGAGGATGAGAAAGCTAAAGTTAATGGTGAGTTATATCCTCTGAAAGGGCCTGGCTGGAAGGTGGTGATACCAACTTCAACAGGAGGGGTACTCTCCTTAACTCTAACTGTTAACGCCAGGTTTGTGGGTGGGATCATGCATGTAGTTGA

mRNA sequence

ATGAAATCTGATGTTGAGCTAATGCTCCCCCGGAAAAAAGAAATCATAATTTATGCAAACATGACTGAGTATCAGAAGAACTTTCAGGAACATTTAATTAACAAGACATTGGAAAATCATCTCTCAGAGAAGGGATCAGGACATGCTTTTAAAGGAAAGCTGAATAATTTGATGGTCCAGCTTCGGAAAAATTGCAACCATCCCGACCTCTTGGAATCAGTTTTTGATAAATCTTCTGCATATCCTCCTGTAGAGCAGATAGTTGAGCAGTGTGGAAAATTTTGCTTACTAGATAGATTGTTGACATGGTTATTTGCACGCAAGCATAAAGTCCTTGTATTCTCTCAATGGACTAAGATTTTGGATCTCATGGAGTACTATTTTAGTGAGAAGGGATTTGAAGTTTGCAGAATCGATGGTGGTGTTAAACTAGATGAAAGAAAAAGACAGATCCAGGAGTTCAATGATGGTAGCAGCAAGTACAGGATATTTATTTTTAAGCACGCGGGCTGGTGGTCTGGATTTGCAACCGCTCAGTCTATAGAGGGCCGCATTCTGAAAAGGGCCTTTAGTAAGTTGAAGCTTGAGCACGTGGTCATTGAGAAGGGGCAATTTCACCATGAACGGACAAAAGCCGACTCTGGAGCTGCTGTAGAGGCAGACATAAGCGACGATGATTTGGAGCGCATTTTAGACCGCTCTGATCTGGTTGTCCATCTGGTTCAGAGGATGAGAAAGCTAAAGTTAATGGTTTGTGGGTGGGATCATGCATGTAGTTGA

Coding sequence (CDS)

ATGAAATCTGATGTTGAGCTAATGCTCCCCCGGAAAAAAGAAATCATAATTTATGCAAACATGACTGAGTATCAGAAGAACTTTCAGGAACATTTAATTAACAAGACATTGGAAAATCATCTCTCAGAGAAGGGATCAGGACATGCTTTTAAAGGAAAGCTGAATAATTTGATGGTCCAGCTTCGGAAAAATTGCAACCATCCCGACCTCTTGGAATCAGTTTTTGATAAATCTTCTGCATATCCTCCTGTAGAGCAGATAGTTGAGCAGTGTGGAAAATTTTGCTTACTAGATAGATTGTTGACATGGTTATTTGCACGCAAGCATAAAGTCCTTGTATTCTCTCAATGGACTAAGATTTTGGATCTCATGGAGTACTATTTTAGTGAGAAGGGATTTGAAGTTTGCAGAATCGATGGTGGTGTTAAACTAGATGAAAGAAAAAGACAGATCCAGGAGTTCAATGATGGTAGCAGCAAGTACAGGATATTTATTTTTAAGCACGCGGGCTGGTGGTCTGGATTTGCAACCGCTCAGTCTATAGAGGGCCGCATTCTGAAAAGGGCCTTTAGTAAGTTGAAGCTTGAGCACGTGGTCATTGAGAAGGGGCAATTTCACCATGAACGGACAAAAGCCGACTCTGGAGCTGCTGTAGAGGCAGACATAAGCGACGATGATTTGGAGCGCATTTTAGACCGCTCTGATCTGGTTGTCCATCTGGTTCAGAGGATGAGAAAGCTAAAGTTAATGGTTTGTGGGTGGGATCATGCATGTAGTTGA
Homology
[Close]
BLAST of CmoCh04G008370 vs. Swiss-Prot
Match: DDM1_ARATH (ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana GN=DDM1 PE=1 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.3e-62
Identity = 116/166 (69.88%), Postives = 135/166 (81.33%), Query Frame = 1 

Query: 1   MKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSEKG-SGHAFKGKLNNLMV 60
           MK DVEL LPRKKEII+YA MT++QK FQEHL+N TLE HL E    G  +KGKLNNL++
Sbjct: 432 MKCDVELSLPRKKEIIMYATMTDHQKKFQEHLVNNTLEAHLGENAIRGQGWKGKLNNLVI 491

Query: 61  QLRKNCNHPDLLESVFDKSSAYPPVEQIVEQCGKFCLLDRLLTWLFARKHKVLVFSQWTK 120
           QLRKNCNHPDLL+   D S  YPPVE+IV QCGKF LL+RLL  LFA  HKVL+FSQWTK
Sbjct: 492 QLRKNCNHPDLLQGQIDGSYLYPPVEEIVGQCGKFRLLERLLVRLFANNHKVLIFSQWTK 551

Query: 121 ILDLMEYYFSEKGFEVCRIDGGVKLDERKRQIQEFNDGSSKYRIFI 166
           +LD+M+YYFSEKGFEVCRIDG VKLDER+RQI++F+D  S   IF+
Sbjct: 552 LLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFL 597

[Close]
BLAST of CmoCh04G008370 vs. Swiss-Prot
Match: ISW2_ORYSJ (Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica GN=Os01g0367900 PE=2 SV=2)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-25
Identity = 92/301 (30.56%), Postives = 149/301 (49.50%), Query Frame = 1 

Query: 1   MKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSEKGSGHAFKGKLNNLMVQ 60
           +KSDVE  LP KKE I+   M++ QK +   L+ K LE  ++  G     + +L N+ +Q
Sbjct: 447 LKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEV-INAGGE----RKRLLNIAMQ 506

Query: 61  LRKNCNHPDLLESVFDKSSAYPPVEQIVEQCGKFCLLDRLLTWLFARKHKVLVFSQWTKI 120
           LRK CNHP L +   +    Y   E +VE  GK  LLD+LL  L  R  +VL+FSQ T++
Sbjct: 507 LRKCCNHPYLFQGA-EPGPPYTTGEHLVENAGKMVLLDKLLPKLKDRDSRVLIFSQMTRL 566

Query: 121 LDLMEYYFSEKGFEVCRIDGGVKLDERKRQIQEFN-DGSSKYRIFIFKHAGW-------- 180
           LD++E Y   +G++ CRIDG    ++R   I+ FN  GS K+   +   AG         
Sbjct: 567 LDILEDYLMYRGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATA 626

Query: 181 ---------WSGFATAQSIE-----------------------GRILKRAFSKLKLEHVV 240
                    W+  A  Q+ +                        ++++RA+ KL L+ +V
Sbjct: 627 DVVVLYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALV 686

Query: 241 IEKGQFHHERT--KAD------SGAAV-----EADISDDDLERILDR-SDLVVHLVQRMR 247
           I++G+   ++T  K D       GA +     ++ I+D+D++RI+ +  +    L  +M+
Sbjct: 687 IQQGRLAEQKTVNKDDLLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEETTAELDAKMK 741

[Close]
BLAST of CmoCh04G008370 vs. Swiss-Prot
Match: CHR17_ARATH (ISWI chromatin-remodeling complex ATPase CHR17 OS=Arabidopsis thaliana GN=CHR17 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.9e-24
Identity = 68/171 (39.77%), Postives = 97/171 (56.73%), Query Frame = 1 

Query: 1   MKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSEKGSGHAFKGKLNNLMVQ 60
           +KSDVE  LP KKE I+   M++ QK + + L+ K LE      G G   + +L N+ +Q
Sbjct: 410 LKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLE---VVNGGGE--RKRLLNIAMQ 469

Query: 61  LRKNCNHPDLLESVFDKSSAYPPVEQIVEQCGKFCLLDRLLTWLFARKHKVLVFSQWTKI 120
           LRK CNHP L +   +    Y   + +V   GK  LLD+LL  L  R  +VL+FSQ T++
Sbjct: 470 LRKCCNHPYLFQGA-EPGPPYTTGDHLVTNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRL 529

Query: 121 LDLMEYYFSEKGFEVCRIDGGVKLDERKRQIQEFN-DGSSKYRIFIFKHAG 171
           LD++E Y   +G++ CRIDG    DER   I+ +N  GS K+   +   AG
Sbjct: 530 LDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAG 574

[Close]
BLAST of CmoCh04G008370 vs. Swiss-Prot
Match: CHD3_DROME (Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3)

HSP 1 Score: 113.2 bits (282), Expect = 4.2e-24
Identity = 64/187 (34.22%), Postives = 108/187 (57.75%), Query Frame = 1 

Query: 1   MKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSEKGSGHAFKGKLNNLMVQ 60
           +K+DV   +P K E I+   ++  QK F +H++ K  +  L++KG G      L N+M+ 
Sbjct: 494 LKADVLKSMPPKSEFIVRVELSSMQKKFYKHILTKNFKA-LNQKGGGRVCS--LLNIMMD 553

Query: 61  LRKNCNHPDLLESVFDKSSAYPP----VEQIVEQCGKFCLLDRLLTWLFARKHKVLVFSQ 120
           LRK CNHP L  S  ++++  P     +  + +  GK  LL ++L  L A  H+VL+FSQ
Sbjct: 554 LRKCCNHPYLFPSAAEEATISPSGLYEMSSLTKASGKLDLLSKMLKQLKADNHRVLLFSQ 613

Query: 121 WTKILDLMEYYFSEKGFEVCRIDGGVKLDERKRQIQEFNDGSSKYRIFIF--KHAGWWSG 180
            TK+L+++E++   +G++  RIDG +K D R++ I  FND  S++ +F+   +  G    
Sbjct: 614 MTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLGIN 673

Query: 181 FATAQSI 182
            ATA ++
Sbjct: 674 LATADTV 677

[Close]
BLAST of CmoCh04G008370 vs. Swiss-Prot
Match: ISW2_ARATH (ISWI chromatin-remodeling complex ATPase CHR11 OS=Arabidopsis thaliana GN=CHR11 PE=1 SV=4)

HSP 1 Score: 111.3 bits (277), Expect = 1.6e-23
Identity = 66/171 (38.60%), Postives = 96/171 (56.14%), Query Frame = 1 

Query: 1   MKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSEKGSGHAFKGKLNNLMVQ 60
           +KSDVE  LP KKE I+   M++ QK + + L+ K LE   +    G   + +L N+ +Q
Sbjct: 405 LKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLE---AVNAGGE--RKRLLNIAMQ 464

Query: 61  LRKNCNHPDLLESVFDKSSAYPPVEQIVEQCGKFCLLDRLLTWLFARKHKVLVFSQWTKI 120
           LRK CNHP L +   +    Y   + ++   GK  LLD+LL  L  R  +VL+FSQ T++
Sbjct: 465 LRKCCNHPYLFQGA-EPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRL 524

Query: 121 LDLMEYYFSEKGFEVCRIDGGVKLDERKRQIQEFN-DGSSKYRIFIFKHAG 171
           LD++E Y   +G+  CRIDG    DER   I+ +N  GS K+   +   AG
Sbjct: 525 LDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAG 569

[Close]
BLAST of CmoCh04G008370 vs. TrEMBL
Match: I6M4G9_COFCA (Uncharacterized protein OS=Coffea canephora GN=111O18.20 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 8.3e-80
Identity = 166/260 (63.85%), Postives = 197/260 (75.77%), Query Frame = 1 

Query: 1   MKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSEKG-SGHAFKGKLNNLMV 60
           +KSDVE MLPRKKEII+YA MT++QKNF +HL+NKTLE+HL EK  SG   KG+LNNLM+
Sbjct: 447 LKSDVEQMLPRKKEIILYATMTDHQKNFTDHLLNKTLEDHLREKAASGRGMKGRLNNLMI 506

Query: 61  QLRKNCNHPDLLESVFDKSSAYPPVEQIVEQCGKFCLLDRLLTWLFARKHKVLVFSQWTK 120
           QLRKNCNHPDLLES FD    +PPV+Q+VEQCGKF LLDRL+  LFAR+HKVL+FSQWTK
Sbjct: 507 QLRKNCNHPDLLESAFD--DFFPPVDQVVEQCGKFRLLDRLVGKLFARQHKVLIFSQWTK 566

Query: 121 ILDLMEYYFSEKGFEVCRIDGGVKLDERKRQIQEFNDGSSK--YRIFIFKHAGWWSGFAT 180
           ILD+++YYF+EKGFEVCRIDGGVKL+ER+RQ  + +  +    +RI   K    +   AT
Sbjct: 567 ILDIIDYYFAEKGFEVCRIDGGVKLEERRRQNPQMDLQAMDRCHRIGQTKPVHVYR-LAT 626

Query: 181 AQSIEGRILKRAFSKLKLEHVVIEKGQFHHERTKADSGAAVE------------------ 238
           AQS+EGR+LKRAFSKLKLEHVVI KGQF  ERTK +S  AVE                  
Sbjct: 627 AQSVEGRMLKRAFSKLKLEHVVIGKGQFKQERTKPNSMEAVEEEDLLALLRDEGTAEEKW 686

[Close]
BLAST of CmoCh04G008370 vs. TrEMBL
Match: A0A0A0KUD3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G038720 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 2.4e-79
Identity = 147/165 (89.09%), Postives = 154/165 (93.33%), Query Frame = 1 

Query: 1   MKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSEKGSGHAFKGKLNNLMVQ 60
           MKSDVELMLPRKKEII+YANMTEYQKNFQEHL+NKTLENHL EKGSG  FKGKLNNLMVQ
Sbjct: 419 MKSDVELMLPRKKEIIMYANMTEYQKNFQEHLVNKTLENHLCEKGSGRGFKGKLNNLMVQ 478

Query: 61  LRKNCNHPDLLESVFDKSSAYPPVEQIVEQCGKFCLLDRLLTWLFARKHKVLVFSQWTKI 120
           LRKNCNHPDLLESVFD S AYPPVEQ+VEQCGKF LLDRLLT LF RKHKVL+FSQWTKI
Sbjct: 479 LRKNCNHPDLLESVFDDSYAYPPVEQLVEQCGKFRLLDRLLTRLFERKHKVLIFSQWTKI 538

Query: 121 LDLMEYYFSEKGFEVCRIDGGVKLDERKRQIQEFNDGSSKYRIFI 166
           LD+M+YYFSEKGFEVCRIDG VKLDERKRQIQEFND +S YRIFI
Sbjct: 539 LDIMDYYFSEKGFEVCRIDGSVKLDERKRQIQEFNDVNSNYRIFI 583

[Close]
BLAST of CmoCh04G008370 vs. TrEMBL
Match: A0A164Y5N0_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_017263 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.3e-77
Identity = 161/259 (62.16%), Postives = 189/259 (72.97%), Query Frame = 1 

Query: 1   MKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSEK-GSGHAFKGKLNNLMV 60
           MK DVE MLPRKKEII+YA MTEYQKNFQEHL+N+TLENHL E   +G  FKG+L NLMV
Sbjct: 361 MKEDVEQMLPRKKEIILYATMTEYQKNFQEHLVNRTLENHLLETVDTGRGFKGRLQNLMV 420

Query: 61  QLRKNCNHPDLLESVFDKSSAYPPVEQIVEQCGKFCLLDRLLTWLFARKHKVLVFSQWTK 120
           QLRKNC HPDLLES +D S  YPPVEQIV QCGKF LLD+LL  L ARKHKVL+FSQWTK
Sbjct: 421 QLRKNCAHPDLLESAYDGSYFYPPVEQIVGQCGKFQLLDKLLRKLLARKHKVLIFSQWTK 480

Query: 121 ILDLMEYYFSEKGFEVCRIDGGVKLDERKRQIQEFNDGSSK--YRIFIFKHAGWWSGFAT 180
           ILD+M YY  E GFEVCRIDG VKL+ER++Q  + +  +    +RI   K    +   AT
Sbjct: 481 ILDIMHYYLEESGFEVCRIDGSVKLEERRKQNPQMDLQAMDRCHRIGQTKPVHVYR-LAT 540

Query: 181 AQSIEGRILKRAFSKLKLEHVVIEKGQFHHERTKADSG-------------------AAV 238
           AQS+EGRILKRAF+KLKLEHVVI KGQF  E+TKAD+                      +
Sbjct: 541 AQSVEGRILKRAFNKLKLEHVVIAKGQFMQEKTKADTADINEEDLLALLRDEENEEDKMI 600

[Close]
BLAST of CmoCh04G008370 vs. TrEMBL
Match: R0EUZ5_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10025927mg PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 3.4e-73
Identity = 159/300 (53.00%), Postives = 193/300 (64.33%), Query Frame = 1 

Query: 1   MKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSEKGSG-HAFKGKLNNLMV 60
           MK DVEL LPRKKEII+YA MT++QK FQEHL+N+TLE HL E  +G   ++GKLNNL V
Sbjct: 433 MKCDVELSLPRKKEIIVYATMTDHQKKFQEHLVNRTLEAHLGENAAGGQGWRGKLNNLFV 492

Query: 61  QLRKNCNHPDLLESVFDKSSAYPPVEQIVEQCGKFCLLDRLLTWLFARKHKVLVFSQWTK 120
           QLRKNCNHPDLL+   D S  YPPVE+IV QCGKF LL+RLL  LFA+ HKVL+FSQWTK
Sbjct: 493 QLRKNCNHPDLLQGQIDGSYEYPPVEEIVGQCGKFRLLERLLVRLFAKNHKVLIFSQWTK 552

Query: 121 ILDLMEYYFSEKGFEVCRIDGGVKLDERKRQIQEFNDGSSKYRIFIFK-HAGW------- 180
           +LD+M+YYFSEKGFEVCRIDG VKLDER+RQI+EF+D  S  RIF+    AG        
Sbjct: 553 LLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKEFSDEKSSCRIFLLSTRAGGLGINLTA 612

Query: 181 ----------WSGFATAQSIE--GRI---------------------LKRAFSKLKLEHV 240
                     W+     Q+++   RI                     LKRA+SKLKLEHV
Sbjct: 613 ADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSIETRVLKRAYSKLKLEHV 672

[Close]
BLAST of CmoCh04G008370 vs. TrEMBL
Match: W9SKZ8_9ROSA (ATP-dependent DNA helicase DDM1 OS=Morus notabilis GN=L484_026824 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 9.9e-73
Identity = 160/300 (53.33%), Postives = 196/300 (65.33%), Query Frame = 1 

Query: 1   MKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSEKG-SGHAFKG-KLNNLM 60
           MKSDVELMLP+KKEII+YA MTE+QKNFQ+HL+NKTLENHL+EK  +G   +G K+NNLM
Sbjct: 535 MKSDVELMLPQKKEIILYATMTEHQKNFQDHLVNKTLENHLTEKWETGGGTRGMKINNLM 594

Query: 61  VQLRKNCNHPDLLESVFDKSSAYPPVEQIVEQCGKFCLLDRLLTWLFARKHKVLVFSQWT 120
           +QLRKNCNHPDLL+S FD S  YPPV+QIV QCGKF LL+RLLT LFA KHK+L+FSQWT
Sbjct: 595 IQLRKNCNHPDLLQSAFDGSYQYPPVKQIVAQCGKFRLLERLLTKLFALKHKILIFSQWT 654

Query: 121 KILDLMEYYFSEKGFEVCRIDGGVKLDERKRQIQEFNDGSSKYRIFIFK-HAGW------ 180
           KILD+M+YYF EKGFEVCRIDG +KLDERKRQI+EFN  +S YRIF+    AG       
Sbjct: 655 KILDIMDYYFCEKGFEVCRIDGNMKLDERKRQIEEFNHVNSNYRIFLLSTRAGGLGINLT 714

Query: 181 -----------WSGFATAQSIEG----------RILKRA-------------FSKLKLEH 238
                      W+     Q+++            + + A             +SKLKLEH
Sbjct: 715 AADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSIEGRMLKRAYSKLKLEH 774

[Close]
BLAST of CmoCh04G008370 vs. TAIR10
Match: AT5G66750.1 (AT5G66750.1 chromatin remodeling 1)

HSP 1 Score: 241.1 bits (614), Expect = 7.5e-64
Identity = 116/166 (69.88%), Postives = 135/166 (81.33%), Query Frame = 1 

Query: 1   MKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSEKG-SGHAFKGKLNNLMV 60
           MK DVEL LPRKKEII+YA MT++QK FQEHL+N TLE HL E    G  +KGKLNNL++
Sbjct: 432 MKCDVELSLPRKKEIIMYATMTDHQKKFQEHLVNNTLEAHLGENAIRGQGWKGKLNNLVI 491

Query: 61  QLRKNCNHPDLLESVFDKSSAYPPVEQIVEQCGKFCLLDRLLTWLFARKHKVLVFSQWTK 120
           QLRKNCNHPDLL+   D S  YPPVE+IV QCGKF LL+RLL  LFA  HKVL+FSQWTK
Sbjct: 492 QLRKNCNHPDLLQGQIDGSYLYPPVEEIVGQCGKFRLLERLLVRLFANNHKVLIFSQWTK 551

Query: 121 ILDLMEYYFSEKGFEVCRIDGGVKLDERKRQIQEFNDGSSKYRIFI 166
           +LD+M+YYFSEKGFEVCRIDG VKLDER+RQI++F+D  S   IF+
Sbjct: 552 LLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFL 597

[Close]
BLAST of CmoCh04G008370 vs. TAIR10
Match: AT5G18620.2 (AT5G18620.2 chromatin remodeling factor17)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-25
Identity = 68/171 (39.77%), Postives = 97/171 (56.73%), Query Frame = 1 

Query: 1   MKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSEKGSGHAFKGKLNNLMVQ 60
           +KSDVE  LP KKE I+   M++ QK + + L+ K LE      G G   + +L N+ +Q
Sbjct: 410 LKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLE---VVNGGGE--RKRLLNIAMQ 469

Query: 61  LRKNCNHPDLLESVFDKSSAYPPVEQIVEQCGKFCLLDRLLTWLFARKHKVLVFSQWTKI 120
           LRK CNHP L +   +    Y   + +V   GK  LLD+LL  L  R  +VL+FSQ T++
Sbjct: 470 LRKCCNHPYLFQGA-EPGPPYTTGDHLVTNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRL 529

Query: 121 LDLMEYYFSEKGFEVCRIDGGVKLDERKRQIQEFN-DGSSKYRIFIFKHAG 171
           LD++E Y   +G++ CRIDG    DER   I+ +N  GS K+   +   AG
Sbjct: 530 LDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAG 574

[Close]
BLAST of CmoCh04G008370 vs. TAIR10
Match: AT3G06400.3 (AT3G06400.3 chromatin-remodeling protein 11)

HSP 1 Score: 111.3 bits (277), Expect = 8.9e-25
Identity = 66/171 (38.60%), Postives = 96/171 (56.14%), Query Frame = 1 

Query: 1   MKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSEKGSGHAFKGKLNNLMVQ 60
           +KSDVE  LP KKE I+   M++ QK + + L+ K LE   +    G   + +L N+ +Q
Sbjct: 405 LKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLE---AVNAGGE--RKRLLNIAMQ 464

Query: 61  LRKNCNHPDLLESVFDKSSAYPPVEQIVEQCGKFCLLDRLLTWLFARKHKVLVFSQWTKI 120
           LRK CNHP L +   +    Y   + ++   GK  LLD+LL  L  R  +VL+FSQ T++
Sbjct: 465 LRKCCNHPYLFQGA-EPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRL 524

Query: 121 LDLMEYYFSEKGFEVCRIDGGVKLDERKRQIQEFN-DGSSKYRIFIFKHAG 171
           LD++E Y   +G+  CRIDG    DER   I+ +N  GS K+   +   AG
Sbjct: 525 LDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAG 569

[Close]
BLAST of CmoCh04G008370 vs. TAIR10
Match: AT5G19310.1 (AT5G19310.1 Homeotic gene regulator)

HSP 1 Score: 101.3 bits (251), Expect = 9.3e-22
Identity = 62/166 (37.35%), Postives = 94/166 (56.63%), Query Frame = 1 

Query: 2   KSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSEKG--SGHAFKGKLNNLMV 61
           KS+VE  LP K ++I+  +M+ +QK + + + +      +   G  SG+     L NL +
Sbjct: 612 KSEVEKFLPGKTQVILKCDMSAWQKLYYKQVTD------VGRVGLHSGNGKSKSLQNLTM 671

Query: 62  QLRKNCNHPDLLESVFDKSSAYPPVEQIVEQCGKFCLLDRLLTWLFARKHKVLVFSQWTK 121
           QLRK CNHP L     D +    P  +IV   GKF LLDRLL  L    H++L+FSQ T+
Sbjct: 672 QLRKCCNHPYLFVGA-DYNMCKKP--EIVRASGKFELLDRLLPKLKKAGHRILLFSQMTR 731

Query: 122 ILDLMEYYFSEKGFEVCRIDGGVKLDERKRQIQEFNDGSSKYRIFI 166
           ++DL+E Y S   +   R+DG  K D+R   +++FN+  S Y +F+
Sbjct: 732 LIDLLEIYLSLNDYMYLRLDGSTKTDQRGILLKQFNEPDSPYFMFL 768

[Close]
BLAST of CmoCh04G008370 vs. TAIR10
Match: AT2G25170.1 (AT2G25170.1 chromatin remodeling factor CHD3 (PICKLE))

HSP 1 Score: 99.0 bits (245), Expect = 4.6e-21
Identity = 63/187 (33.69%), Postives = 107/187 (57.22%), Query Frame = 1 

Query: 1   MKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSEKGSGHAFKGKLNNLMVQ 60
           +K DV   +P KKE+I+  +++  QK + + +  +  +  L++KG        LNN+M++
Sbjct: 507 VKKDVMKDMPPKKELILRVDLSSLQKEYYKAIFTRNYQV-LTKKGGAQI---SLNNIMME 566

Query: 61  LRKNCNHPDLLESV----FDKSSAYPPVEQIVEQCGKFCLLDRLLTWLFARKHKVLVFSQ 120
           LRK C HP +LE V     D + A+   +Q++E CGK  LLD+++  L  + H+VL+++Q
Sbjct: 567 LRKVCCHPYMLEGVEPVIHDANEAF---KQLLESCGKLQLLDKMMVKLKEQGHRVLIYTQ 626

Query: 121 WTKILDLMEYYFSEKGFEVCRIDGGVKLDERKRQIQEFNDGSSKYRIFIF--KHAGWWSG 180
           +  +LDL+E Y + K ++  RIDG V   ER+ +I  FN  +S    F+   +  G    
Sbjct: 627 FQHMLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGIN 686

Query: 181 FATAQSI 182
            ATA ++
Sbjct: 687 LATADTV 686

[Close]
BLAST of CmoCh04G008370 vs. NCBI nr
Match: gi|338762846|gb|AEI98633.1| (hypothetical protein 111O18.20 [Coffea canephora])

HSP 1 Score: 305.1 bits (780), Expect = 1.2e-79
Identity = 166/260 (63.85%), Postives = 197/260 (75.77%), Query Frame = 1 

Query: 1   MKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSEKG-SGHAFKGKLNNLMV 60
           +KSDVE MLPRKKEII+YA MT++QKNF +HL+NKTLE+HL EK  SG   KG+LNNLM+
Sbjct: 447 LKSDVEQMLPRKKEIILYATMTDHQKNFTDHLLNKTLEDHLREKAASGRGMKGRLNNLMI 506

Query: 61  QLRKNCNHPDLLESVFDKSSAYPPVEQIVEQCGKFCLLDRLLTWLFARKHKVLVFSQWTK 120
           QLRKNCNHPDLLES FD    +PPV+Q+VEQCGKF LLDRL+  LFAR+HKVL+FSQWTK
Sbjct: 507 QLRKNCNHPDLLESAFD--DFFPPVDQVVEQCGKFRLLDRLVGKLFARQHKVLIFSQWTK 566

Query: 121 ILDLMEYYFSEKGFEVCRIDGGVKLDERKRQIQEFNDGSSK--YRIFIFKHAGWWSGFAT 180
           ILD+++YYF+EKGFEVCRIDGGVKL+ER+RQ  + +  +    +RI   K    +   AT
Sbjct: 567 ILDIIDYYFAEKGFEVCRIDGGVKLEERRRQNPQMDLQAMDRCHRIGQTKPVHVYR-LAT 626

Query: 181 AQSIEGRILKRAFSKLKLEHVVIEKGQFHHERTKADSGAAVE------------------ 238
           AQS+EGR+LKRAFSKLKLEHVVI KGQF  ERTK +S  AVE                  
Sbjct: 627 AQSVEGRMLKRAFSKLKLEHVVIGKGQFKQERTKPNSMEAVEEEDLLALLRDEGTAEEKW 686

[Close]
BLAST of CmoCh04G008370 vs. NCBI nr
Match: gi|778690601|ref|XP_011653137.1| (PREDICTED: ATP-dependent DNA helicase DDM1 [Cucumis sativus])

HSP 1 Score: 303.5 bits (776), Expect = 3.5e-79
Identity = 147/165 (89.09%), Postives = 154/165 (93.33%), Query Frame = 1 

Query: 1   MKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSEKGSGHAFKGKLNNLMVQ 60
           MKSDVELMLPRKKEII+YANMTEYQKNFQEHL+NKTLENHL EKGSG  FKGKLNNLMVQ
Sbjct: 419 MKSDVELMLPRKKEIIMYANMTEYQKNFQEHLVNKTLENHLCEKGSGRGFKGKLNNLMVQ 478

Query: 61  LRKNCNHPDLLESVFDKSSAYPPVEQIVEQCGKFCLLDRLLTWLFARKHKVLVFSQWTKI 120
           LRKNCNHPDLLESVFD S AYPPVEQ+VEQCGKF LLDRLLT LF RKHKVL+FSQWTKI
Sbjct: 479 LRKNCNHPDLLESVFDDSYAYPPVEQLVEQCGKFRLLDRLLTRLFERKHKVLIFSQWTKI 538

Query: 121 LDLMEYYFSEKGFEVCRIDGGVKLDERKRQIQEFNDGSSKYRIFI 166
           LD+M+YYFSEKGFEVCRIDG VKLDERKRQIQEFND +S YRIFI
Sbjct: 539 LDIMDYYFSEKGFEVCRIDGSVKLDERKRQIQEFNDVNSNYRIFI 583

[Close]
BLAST of CmoCh04G008370 vs. NCBI nr
Match: gi|659107557|ref|XP_008453736.1| (PREDICTED: ATP-dependent DNA helicase DDM1 isoform X2 [Cucumis melo])

HSP 1 Score: 302.4 bits (773), Expect = 7.8e-79
Identity = 146/165 (88.48%), Postives = 154/165 (93.33%), Query Frame = 1 

Query: 1   MKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSEKGSGHAFKGKLNNLMVQ 60
           MKSDVELMLPRKKEII+YA MTEYQKNFQEHL+NKTLENHLSEKGSG  FKGKLNNLMVQ
Sbjct: 419 MKSDVELMLPRKKEIIMYATMTEYQKNFQEHLVNKTLENHLSEKGSGRGFKGKLNNLMVQ 478

Query: 61  LRKNCNHPDLLESVFDKSSAYPPVEQIVEQCGKFCLLDRLLTWLFARKHKVLVFSQWTKI 120
           LRKNCNHPDLLESVFD+S  YPPVEQ+VEQCGKF LLDRLLT LF RKHKVL+FSQWTKI
Sbjct: 479 LRKNCNHPDLLESVFDESYTYPPVEQLVEQCGKFRLLDRLLTRLFERKHKVLIFSQWTKI 538

Query: 121 LDLMEYYFSEKGFEVCRIDGGVKLDERKRQIQEFNDGSSKYRIFI 166
           LD+M+YYFSEKGFEVCRIDG VKLDERKRQIQEFND +S YRIFI
Sbjct: 539 LDIMDYYFSEKGFEVCRIDGSVKLDERKRQIQEFNDVNSNYRIFI 583

[Close]
BLAST of CmoCh04G008370 vs. NCBI nr
Match: gi|659107555|ref|XP_008453735.1| (PREDICTED: ATP-dependent DNA helicase DDM1 isoform X1 [Cucumis melo])

HSP 1 Score: 302.4 bits (773), Expect = 7.8e-79
Identity = 146/165 (88.48%), Postives = 154/165 (93.33%), Query Frame = 1 

Query: 1   MKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSEKGSGHAFKGKLNNLMVQ 60
           MKSDVELMLPRKKEII+YA MTEYQKNFQEHL+NKTLENHLSEKGSG  FKGKLNNLMVQ
Sbjct: 419 MKSDVELMLPRKKEIIMYATMTEYQKNFQEHLVNKTLENHLSEKGSGRGFKGKLNNLMVQ 478

Query: 61  LRKNCNHPDLLESVFDKSSAYPPVEQIVEQCGKFCLLDRLLTWLFARKHKVLVFSQWTKI 120
           LRKNCNHPDLLESVFD+S  YPPVEQ+VEQCGKF LLDRLLT LF RKHKVL+FSQWTKI
Sbjct: 479 LRKNCNHPDLLESVFDESYTYPPVEQLVEQCGKFRLLDRLLTRLFERKHKVLIFSQWTKI 538

Query: 121 LDLMEYYFSEKGFEVCRIDGGVKLDERKRQIQEFNDGSSKYRIFI 166
           LD+M+YYFSEKGFEVCRIDG VKLDERKRQIQEFND +S YRIFI
Sbjct: 539 LDIMDYYFSEKGFEVCRIDGSVKLDERKRQIQEFNDVNSNYRIFI 583

[Close]
BLAST of CmoCh04G008370 vs. NCBI nr
Match: gi|1021036235|gb|KZM94018.1| (hypothetical protein DCAR_017263 [Daucus carota subsp. sativus])

HSP 1 Score: 297.7 bits (761), Expect = 1.9e-77
Identity = 161/259 (62.16%), Postives = 189/259 (72.97%), Query Frame = 1 

Query: 1   MKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSEK-GSGHAFKGKLNNLMV 60
           MK DVE MLPRKKEII+YA MTEYQKNFQEHL+N+TLENHL E   +G  FKG+L NLMV
Sbjct: 361 MKEDVEQMLPRKKEIILYATMTEYQKNFQEHLVNRTLENHLLETVDTGRGFKGRLQNLMV 420

Query: 61  QLRKNCNHPDLLESVFDKSSAYPPVEQIVEQCGKFCLLDRLLTWLFARKHKVLVFSQWTK 120
           QLRKNC HPDLLES +D S  YPPVEQIV QCGKF LLD+LL  L ARKHKVL+FSQWTK
Sbjct: 421 QLRKNCAHPDLLESAYDGSYFYPPVEQIVGQCGKFQLLDKLLRKLLARKHKVLIFSQWTK 480

Query: 121 ILDLMEYYFSEKGFEVCRIDGGVKLDERKRQIQEFNDGSSK--YRIFIFKHAGWWSGFAT 180
           ILD+M YY  E GFEVCRIDG VKL+ER++Q  + +  +    +RI   K    +   AT
Sbjct: 481 ILDIMHYYLEESGFEVCRIDGSVKLEERRKQNPQMDLQAMDRCHRIGQTKPVHVYR-LAT 540

Query: 181 AQSIEGRILKRAFSKLKLEHVVIEKGQFHHERTKADSG-------------------AAV 238
           AQS+EGRILKRAF+KLKLEHVVI KGQF  E+TKAD+                      +
Sbjct: 541 AQSVEGRILKRAFNKLKLEHVVIAKGQFMQEKTKADTADINEEDLLALLRDEENEEDKMI 600

The following BLAST results are available for this feature:
BLAST of CmoCh04G008370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DDM1_ARATH1.3e-6269.88ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana GN=DDM1 PE=1 SV=1[more]
ISW2_ORYSJ1.3e-2530.56Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japoni... [more]
CHR17_ARATH1.9e-2439.77ISWI chromatin-remodeling complex ATPase CHR17 OS=Arabidopsis thaliana GN=CHR17 ... [more]
CHD3_DROME4.2e-2434.22Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 P... [more]
ISW2_ARATH1.6e-2338.60ISWI chromatin-remodeling complex ATPase CHR11 OS=Arabidopsis thaliana GN=CHR11 ... [more]
BLAST of CmoCh04G008370 vs. TrEMBL
Match NameE-valueIdentityDescription
I6M4G9_COFCA8.3e-8063.85Uncharacterized protein OS=Coffea canephora GN=111O18.20 PE=4 SV=1[more]
A0A0A0KUD3_CUCSA2.4e-7989.09Uncharacterized protein OS=Cucumis sativus GN=Csa_4G038720 PE=4 SV=1[more]
A0A164Y5N0_DAUCA1.3e-7762.16Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_017263 PE=4 SV=1[more]
R0EUZ5_9BRAS3.4e-7353.00Uncharacterized protein OS=Capsella rubella GN=CARUB_v10025927mg PE=4 SV=1[more]
W9SKZ8_9ROSA9.9e-7353.33ATP-dependent DNA helicase DDM1 OS=Morus notabilis GN=L484_026824 PE=4 SV=1[more]
BLAST of CmoCh04G008370 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G66750.17.5e-6469.88 chromatin remodeling 1[more]
AT5G18620.21.1e-2539.77 chromatin remodeling factor17[more]
AT3G06400.38.9e-2538.60 chromatin-remodeling protein 11[more]
AT5G19310.19.3e-2237.35 Homeotic gene regulator[more]
AT2G25170.14.6e-2133.69 chromatin remodeling factor CHD3 (PICKLE)[more]
BLAST of CmoCh04G008370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|338762846|gb|AEI98633.1|1.2e-7963.85hypothetical protein 111O18.20 [Coffea canephora][more]
gi|778690601|ref|XP_011653137.1|3.5e-7989.09PREDICTED: ATP-dependent DNA helicase DDM1 [Cucumis sativus][more]
gi|659107557|ref|XP_008453736.1|7.8e-7988.48PREDICTED: ATP-dependent DNA helicase DDM1 isoform X2 [Cucumis melo][more]
gi|659107555|ref|XP_008453735.1|7.8e-7988.48PREDICTED: ATP-dependent DNA helicase DDM1 isoform X1 [Cucumis melo][more]
gi|1021036235|gb|KZM94018.1|1.9e-7762.16hypothetical protein DCAR_017263 [Daucus carota subsp. sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021006HDA1 complex subunit 2/3
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0016575histone deacetylation
Vocabulary: Cellular Component
TermDefinition
GO:0070823HDA1 complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016575 histone deacetylation
biological_process GO:0043412 macromolecule modification
biological_process GO:0032197 transposition, RNA-mediated
biological_process GO:0016246 RNA interference
biological_process GO:0006349 regulation of gene expression by genetic imprinting
biological_process GO:0044030 regulation of DNA methylation
biological_process GO:0051574 positive regulation of histone H3-K9 methylation
biological_process GO:0090241 negative regulation of histone H4 acetylation
biological_process GO:0006346 methylation-dependent chromatin silencing
biological_process GO:0006344 maintenance of chromatin silencing
biological_process GO:0016572 histone phosphorylation
biological_process GO:0009294 DNA mediated transformation
biological_process GO:0032508 DNA duplex unwinding
biological_process GO:0031048 chromatin silencing by small RNA
biological_process GO:0008283 cell proliferation
biological_process GO:0019219 regulation of nucleobase-containing compound metabolic process
biological_process GO:0040029 regulation of gene expression, epigenetic
biological_process GO:0010605 negative regulation of macromolecule metabolic process
biological_process GO:0031324 negative regulation of cellular metabolic process
cellular_component GO:0070823 HDA1 complex
cellular_component GO:0000786 nucleosome
cellular_component GO:0005657 replication fork
molecular_function GO:0017111 nucleoside-triphosphatase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0004003 ATP-dependent DNA helicase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G008370.1CmoCh04G008370.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021006HDA1 complex subunit 2/3PFAMPF11496HDA2-3coord: 18..163
score: 2.
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 74..160
score: 2.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..211
score: 1.24
NoneNo IPR availablePANTHERPTHR10799SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATEDcoord: 1..224
score: 3.5
NoneNo IPR availablePANTHERPTHR10799:SF606PROTEIN PQN-21, ISOFORM Bcoord: 1..224
score: 3.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G008370CmaCh04G007790Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G008370MELO3C017558.2Melon (DHL92) v3.6.1cmomedB779
CmoCh04G008370Cla97C07G136040Watermelon (97103) v2cmowmbB748
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G008370Cucumber (Chinese Long) v3cmocucB0833
CmoCh04G008370Watermelon (97103) v2cmowmbB682
CmoCh04G008370Wax gourdcmowgoB0843
CmoCh04G008370Cucurbita moschata (Rifu)cmocmoB285
CmoCh04G008370Cucurbita moschata (Rifu)cmocmoB451
CmoCh04G008370Cucumber (Gy14) v1cgycmoB0596
CmoCh04G008370Cucurbita maxima (Rimu)cmacmoB337
CmoCh04G008370Wild cucumber (PI 183967)cmocpiB715
CmoCh04G008370Wild cucumber (PI 183967)cmocpiB775
CmoCh04G008370Cucumber (Chinese Long) v2cmocuB705
CmoCh04G008370Melon (DHL92) v3.5.1cmomeB686
CmoCh04G008370Melon (DHL92) v3.5.1cmomeB702
CmoCh04G008370Watermelon (Charleston Gray)cmowcgB641
CmoCh04G008370Watermelon (Charleston Gray)cmowcgB670
CmoCh04G008370Watermelon (97103) v1cmowmB671
CmoCh04G008370Watermelon (97103) v1cmowmB711
CmoCh04G008370Cucurbita pepo (Zucchini)cmocpeB655
CmoCh04G008370Cucurbita pepo (Zucchini)cmocpeB667
CmoCh04G008370Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G008370Cucurbita pepo (Zucchini)cmocpeB684
CmoCh04G008370Bottle gourd (USVL1VR-Ls)cmolsiB692
CmoCh04G008370Cucumber (Gy14) v2cgybcmoB521
CmoCh04G008370Silver-seed gourdcarcmoB1259
CmoCh04G008370Silver-seed gourdcarcmoB1371