CmaCh04G007790 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G007790
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding
Location	Cma_Chr04 : 3971220 .. 3974465 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTGTCTCTTATAACATATAGCAATGGATTTTAGGAAACTTATAATCCTGAAAGCATATTTTTCTAGAAGGGGCATCGGCTGAAAAACTCAAAATGCAAATTGCTGAAGGAGTTGAAGTATATAACTGTTGAAAATAAACTGCTGGGACACCCCTACAGAATAACTTGGCAGAGCTTTGGTCGTTGTTGAACTTTATTTTGTCAGTTGTCTTTTCATCCAATGAAGAATTTGAGTCATGGTGAGTATGCCTTTTTATTTTTTTATAGTATAATCTTCGAGTTTTCTTTTTTCATCCACAAACACGGAGGCAAGTTTATATTCCCTTTGAAGTACTGAACTCTGTTAAATAAATAATAGCACTCATATTTTGAGTTGTAGCTTACAAGTCAGGGGGTCAATAGTTATTATTACCATAATGAAGATTGATTTCCTCCTAATAATTTGTTTTCAAGTTTGATCTCTCTGGAAAGTGTCATGAATAGAAAGGCCCATGTTTGTAATTCTTTTGATGGTTTTTTTTCCGAAGTATGTTGCACAAGTTTGTCATATTCATATATTCAAATCCTGCAGGTGGTAGCAAAGCTGCATGCAATCCTGAGACCATTTCTACTTCGGAGAATGAAATCTGATGTTGAGCTAATGCTCCCTCGGAAAAAAGAAATCATAATTTATGCAAACATGACTGAGTATCAGAAGAACTTTCAGGAACATTTAATTAACAAGACATTGGAAAATCATCTCTCAGATAAGGGATCAGGTGGTATAGCATTGGGTTTAGTATATGTATGCCATGTGCTTGCCGTTGTAACTATCAATTTTCTCTATTCTTATCATTTTCTTTATGACGTTTATCATTTTTATTTTATTTTATTTTGAATTTCTTTATGAAACGTCATTTTTATTCATTACAGACTCCAGTCCATTTTATGTTCTGCTAATTGTGGTAATTCTTTTCTGAAAATGCAGGATATTCTCCTGTAGAGCAGATAGTTGAGCAGTGTGGAAAATTTTGCTTACTAGATAGATTGTTGACACGGTTATTTGCACCCAAGCATAAAGTAAATTGGTCTGTAACTCTAGTTCTGTCATTCTTCTCAGTTTTCCTAGTTAACCTAATTGCCTACTTTGCATTTCTATTAGGTCCTTATATTCTCTCAATGGACTAAGATTTTGGATCTCATGGAGTACTATTTTAGTGAGAAGGGATTTGAAGTTTGCAGAATCAATGGTGGTGTGAAACTAGATGAAAGAAAAAGACAGGTATGAGTTTGCACATGAAATAACCAAACAGTTTGAAGCCAGTCGTGTTGTTTGTTGTTGGTCTGTTTTTCTTTCATCCACTGCGTTTTTTATTCGCATCAAGGCCTATATGTGCCAAAACGTTGCAGTATAATGTCACTTTCAGAAATTGTTGCACTAAGGAACTATATTCCGTTATCTGTTACCATGGAGAGAGTGAGCCAATTGTTTCTGAGGAAGGGGGTGTAAGATATTGATTGTTGGGCTCGTGGAGCAAGGAAGAGAGAAAGTAGGAAACTAAAAGTAGGAAACCGTATTTGGGCTCACACGATGGAAATGCTTGTAGTGGGGTGGTGGTGGTAATAATTGACTTCAGTGCCCCCACAACTTTATTTCCCTTGGGCTAGTTGGCGAACTCTATGTTCTGTTGGTCCCTAATGTTTGGATGGGCACATTTGGAACAGTTGCTTTTCCTAAGGTGCTCATGAGTGTCCTGATCAGGTGCATGCCTAGCCATTCCACCTCGCTTCATATTTAGTATGAGATGTCCAAAAACCTCAGTACTGCCTTGCATTTACTTTGTACTTTGTGCTCCTACTTTATTAGGCTCTGTTTATGATCTTGAGAAACATCGAGTTGAGACTGAATCAATTACTTGAATGTTACAAAATGGTAGTCTATTCGGTTATATTTAAATAATTAATTGAATCTCTTTACAAGCCGTGGTGATCTATTACCTTAATTGATTTCTTATCTTGGGTTTATTTCCTTAGCTAGACTAAAAATTTTGTGAATATTCCATCATGGAAGTGTTGGTGATGGGTTATCAAGGATTGCATAATTGACCAATTTAGTTTCTGTACATGTAGATCCAGGAGTTCAATGATGGTAGCAGCAAGTACAGGATATTTATTTTAAGCACGCAGGCTGGTGGTCTGGGTATCAACCTTACTGCTGCAGATACTTGTATACTCTATGATAGCGATTGGGTATTTTTCTTGATACTGTGTGTATGTACGTATGTACATATGTATGTATCATGTATGCAACTCACCATATTCCTTATGTACACCAGAACCCACAAATGGATTTGCAGGCCATGGATAGGTGTCACAGGATAGGTCAAACGAAACCTGTACATGTTTACAGATTTGCAACCGCTCAGTCTATAGATGTAGCTTGCTGATGGTCTTAATCTCTCGGTGTATATTTCATAAAGTTATTCATCAGTACTCTATAATCTTTGACGAATTGTGTTACCAGGGCCGCATTCTGAAAAGGGCCTTTAGTAAGTTGAAGCTTGAGCACGTGGTCATTGAGAAGGGGCAATTTCACCATGAACGGACAAAATCCGACTCTGGAGCTGCTGTAGAGGTTAGTTTAAGCGTTTCAATCCATTTTATGCACTCTGATTCTTCATTGCCTACATTTGATTTTGGAAATGTCAATAGAGCGACAACCATTAGTTGTCTCGTGAGAATAATTGGGATGTGTGCAAGCCGGCTTGGACACTCAAATATAAAAATAAAATATCTTTTCGTGAGAAGTTTGTTTATGTTACTTGGTGACCAAGATTTGTTGTGCAAGCTCATTACCTGGTTGTGGTAAAAAAAATTTCAGGAAGCGGATCTATTAGCACTACTAAGAGAGGAAGATTCTGCTGAAGACAAGATTGATACAGACAGACAGAAGTGACGCTGATTTGGAGCGCATTTTAGACCGCTCTGATCTGGTTGTCCCATCTGGTTCAGAGGATGAGAAAGCTAAAGTTAATGGTGAGTTATATCCTCTGAAAGGGCCTGGCTGGAAGGTGGTGATACCAACTTCAACAGGAGGGGTACTCTCTACCCTTAACTCTTACTATTAGCGCTAGGTTTGTGGGTGGGAACATGCATGTAGTTGAGGGTTTCTGGTTGCATGCAATTTTTGGTCCTCATAGTTGAACCGTCTTCTGCATCTGATATTGTAATCTTCAGTGCAGAGTTTCTACGGTCCTAATTAAACC

mRNA sequence

AAGTGTCTCTTATAACATATAGCAATGGATTTTAGGAAACTTATAATCCTGAAAGCATATTTTTCTAGAAGGGGCATCGGCTGAAAAACTCAAAATGCAAATTGCTGAAGGAGTTGAAGTATATAACTGTTGAAAATAAACTGCTGGGACACCCCTACAGAATAACTTGGCAGAGCTTTGGTCGTTGTTGAACTTTATTTTGTCAGTTGTCTTTTCATCCAATGAAGAATTTGAGTCATGGTGGTAGCAAAGCTGCATGCAATCCTGAGACCATTTCTACTTCGGAGAATGAAATCTGATGTTGAGCTAATGCTCCCTCGGAAAAAAGAAATCATAATTTATGCAAACATGACTGAGTATCAGAAGAACTTTCAGGAACATTTAATTAACAAGACATTGGAAAATCATCTCTCAGATAAGGGATCAGGATATTCTCCTGTAGAGCAGATAGTTGAGCAGTGTGGAAAATTTTGCTTACTAGATAGATTGTTGACACGGTTATTTGCACCCAAGCATAAAGTCCTTATATTCTCTCAATGGACTAAGATTTTGGATCTCATGGAGTACTATTTTAGTGAGAAGGGATTTGAAGTTTGCAGAATCAATGGTGGTGTGAAACTAGATGAAAGAAAAAGACAGATCCAGGAGTTCAATGATGGTAGCAGCAAGTACAGGATATTTATTTTAAGCACGCAGGCTGGTGGTCTGGGTATCAACCTTACTGCTGCAGATACTTGTATACTCTATGATAGCGATTGGAACCCACAAATGGATTTGCAGGCCATGGATAGGTGTCACAGGATAGGTCAAACGAAACCTGTACATGTTTACAGATTTGCAACCGCTCAGTCTATAGATGGCCGCATTCTGAAAAGGGCCTTTAGTAAGTTGAAGCTTGAGCACGTGGTCATTGAGAAGGGGCAATTTCACCATGAACGGACAAAATCCGACTCTGGAGCTGCTGTAGAGGAAGCGGATCTATTAGCACTACTAAGAGAGGAAGATTCTGCTGAAGACAAGATTGATACAGACAGACAGAAGTGACGCTGATTTGGAGCGCATTTTAGACCGCTCTGATCTGGTTGTCCCATCTGGTTCAGAGGATGAGAAAGCTAAAGTTAATGGTGAGTTATATCCTCTGAAAGGGCCTGGCTGGAAGGTGGTGATACCAACTTCAACAGGAGGGGTACTCTCTACCCTTAACTCTTACTATTAGCGCTAGGTTTGTGGGTGGGAACATGCATGTAGTTGAGGGTTTCTGGTTGCATGCAATTTTTGGTCCTCATAGTTGAACCGTCTTCTGCATCTGATATTGTAATCTTCAGTGCAGAGTTTCTACGGTCCTAATTAAACC

Coding sequence (CDS)

ATGGTGGTAGCAAAGCTGCATGCAATCCTGAGACCATTTCTACTTCGGAGAATGAAATCTGATGTTGAGCTAATGCTCCCTCGGAAAAAAGAAATCATAATTTATGCAAACATGACTGAGTATCAGAAGAACTTTCAGGAACATTTAATTAACAAGACATTGGAAAATCATCTCTCAGATAAGGGATCAGGATATTCTCCTGTAGAGCAGATAGTTGAGCAGTGTGGAAAATTTTGCTTACTAGATAGATTGTTGACACGGTTATTTGCACCCAAGCATAAAGTCCTTATATTCTCTCAATGGACTAAGATTTTGGATCTCATGGAGTACTATTTTAGTGAGAAGGGATTTGAAGTTTGCAGAATCAATGGTGGTGTGAAACTAGATGAAAGAAAAAGACAGATCCAGGAGTTCAATGATGGTAGCAGCAAGTACAGGATATTTATTTTAAGCACGCAGGCTGGTGGTCTGGGTATCAACCTTACTGCTGCAGATACTTGTATACTCTATGATAGCGATTGGAACCCACAAATGGATTTGCAGGCCATGGATAGGTGTCACAGGATAGGTCAAACGAAACCTGTACATGTTTACAGATTTGCAACCGCTCAGTCTATAGATGGCCGCATTCTGAAAAGGGCCTTTAGTAAGTTGAAGCTTGAGCACGTGGTCATTGAGAAGGGGCAATTTCACCATGAACGGACAAAATCCGACTCTGGAGCTGCTGTAGAGGAAGCGGATCTATTAGCACTACTAAGAGAGGAAGATTCTGCTGAAGACAAGATTGATACAGACAGACAGAAGTGA

Protein sequence

MVVAKLHAILRPFLLRRMKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSDKGSGYSPVEQIVEQCGKFCLLDRLLTRLFAPKHKVLIFSQWTKILDLMEYYFSEKGFEVCRINGGVKLDERKRQIQEFNDGSSKYRIFILSTQAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRFATAQSIDGRILKRAFSKLKLEHVVIEKGQFHHERTKSDSGAAVEEADLLALLREEDSAEDKIDTDRQK

Homology

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BLAST of CmaCh04G007790 vs. Swiss-Prot
Match: DDM1_ARATH (ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana GN=DDM1 PE=1 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 1.7e-105
Identity = 200/299 (66.89%), Postives = 232/299 (77.59%), Query Frame = 1


Query: 2   VVAKLHAILRPFLLRRMKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSD- 61
           VV+KLH ILRPF+LRRMK DVEL LPRKKEII+YA MT++QK FQEHL+N TLE HL + 
Sbjct: 416 VVSKLHGILRPFILRRMKCDVELSLPRKKEIIMYATMTDHQKKFQEHLVNNTLEAHLGEN 475

Query: 62  --KGSG-------------------------------YSPVEQIVEQCGKFCLLDRLLTR 121
             +G G                               Y PVE+IV QCGKF LL+RLL R
Sbjct: 476 AIRGQGWKGKLNNLVIQLRKNCNHPDLLQGQIDGSYLYPPVEEIVGQCGKFRLLERLLVR 535

Query: 122 LFAPKHKVLIFSQWTKILDLMEYYFSEKGFEVCRINGGVKLDERKRQIQEFNDGSSKYRI 181
           LFA  HKVLIFSQWTK+LD+M+YYFSEKGFEVCRI+G VKLDER+RQI++F+D  S   I
Sbjct: 536 LFANNHKVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSI 595

Query: 182 FILSTQAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRFATAQSID 241
           F+LST+AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYR +TAQSI+
Sbjct: 596 FLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIE 655

Query: 242 GRILKRAFSKLKLEHVVIEKGQFHHERTKSDSGAAVEEADLLALLREEDSAEDK-IDTD 266
            R+LKRA+SKLKLEHVVI +GQFH ER KS +   +EE D+LALL+E+++AEDK I TD
Sbjct: 656 TRVLKRAYSKLKLEHVVIGQGQFHQERAKSST--PLEEEDILALLKEDETAEDKLIQTD 712

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BLAST of CmaCh04G007790 vs. Swiss-Prot
Match: ISW2_ORYSJ (Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica GN=Os01g0367900 PE=2 SV=2)

HSP 1 Score: 220.3 bits (560), Expect = 2.5e-56
Identity = 121/279 (43.37%), Postives = 170/279 (60.93%), Query Frame = 1


Query: 2   VVAKLHAILRPFLLRRMKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLE------ 61
           VV +LH +LRPFLLRR+KSDVE  LP KKE I+   M++ QK +   L+ K LE      
Sbjct: 431 VVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVINAGG 490

Query: 62  ----------------NHL-----SDKGSGYSPVEQIVEQCGKFCLLDRLLTRLFAPKHK 121
                           NH      ++ G  Y+  E +VE  GK  LLD+LL +L     +
Sbjct: 491 ERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENAGKMVLLDKLLPKLKDRDSR 550

Query: 122 VLIFSQWTKILDLMEYYFSEKGFEVCRINGGVKLDERKRQIQEFNDGSSKYRIFILSTQA 181
           VLIFSQ T++LD++E Y   +G++ CRI+G    ++R   I+ FN   S+  +F+LST+A
Sbjct: 551 VLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRA 610

Query: 182 GGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRFATAQSIDGRILKRA 241
           GGLGINL  AD  +LYDSDWNPQ DLQA DR HRIGQ K V V+RF T  +I+ ++++RA
Sbjct: 611 GGLGINLATADVVVLYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERA 670

Query: 242 FSKLKLEHVVIEKGQFHHERTKSDSGAAVEEADLLALLR 254
           + KL L+ +VI++G+   ++T       V + DLL ++R
Sbjct: 671 YKKLALDALVIQQGRLAEQKT-------VNKDDLLQMVR 702

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BLAST of CmaCh04G007790 vs. Swiss-Prot
Match: CHR17_ARATH (ISWI chromatin-remodeling complex ATPase CHR17 OS=Arabidopsis thaliana GN=CHR17 PE=1 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 4.3e-56
Identity = 120/279 (43.01%), Postives = 171/279 (61.29%), Query Frame = 1


Query: 2   VVAKLHAILRPFLLRRMKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLE------ 61
           VV +LH +LRPFLLRR+KSDVE  LP KKE I+   M++ QK + + L+ K LE      
Sbjct: 394 VVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNGGG 453

Query: 62  ----------------NHL-----SDKGSGYSPVEQIVEQCGKFCLLDRLLTRLFAPKHK 121
                           NH      ++ G  Y+  + +V   GK  LLD+LL +L     +
Sbjct: 454 ERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLVTNAGKMVLLDKLLPKLKDRDSR 513

Query: 122 VLIFSQWTKILDLMEYYFSEKGFEVCRINGGVKLDERKRQIQEFNDGSSKYRIFILSTQA 181
           VLIFSQ T++LD++E Y   +G++ CRI+G    DER   I+ +N   S+  +F+LST+A
Sbjct: 514 VLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRA 573

Query: 182 GGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRFATAQSIDGRILKRA 241
           GGLGINL  AD  ILYDSDWNPQ+DLQA DR HRIGQ K V V+RF T  +I+ ++++RA
Sbjct: 574 GGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIERA 633

Query: 242 FSKLKLEHVVIEKGQFHHERTKSDSGAAVEEADLLALLR 254
           + KL L+ +VI++G+   ++T       V + +LL ++R
Sbjct: 634 YKKLALDALVIQQGRLAEQKT-------VNKDELLQMVR 665

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BLAST of CmaCh04G007790 vs. Swiss-Prot
Match: ISW2_ARATH (ISWI chromatin-remodeling complex ATPase CHR11 OS=Arabidopsis thaliana GN=CHR11 PE=1 SV=4)

HSP 1 Score: 216.9 bits (551), Expect = 2.8e-55
Identity = 119/279 (42.65%), Postives = 170/279 (60.93%), Query Frame = 1


Query: 2   VVAKLHAILRPFLLRRMKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLE------ 61
           VV +LH +LRPFLLRR+KSDVE  LP KKE I+   M++ QK + + L+ K LE      
Sbjct: 389 VVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEAVNAGG 448

Query: 62  ----------------NHL-----SDKGSGYSPVEQIVEQCGKFCLLDRLLTRLFAPKHK 121
                           NH      ++ G  Y+  + ++   GK  LLD+LL +L     +
Sbjct: 449 ERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSR 508

Query: 122 VLIFSQWTKILDLMEYYFSEKGFEVCRINGGVKLDERKRQIQEFNDGSSKYRIFILSTQA 181
           VLIFSQ T++LD++E Y   +G+  CRI+G    DER   I+ +N   S+  +F+LST+A
Sbjct: 509 VLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRA 568

Query: 182 GGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRFATAQSIDGRILKRA 241
           GGLGINL  AD  ILYDSDWNPQ+DLQA DR HRIGQ K V V+RF T  +I+ ++++RA
Sbjct: 569 GGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIERA 628

Query: 242 FSKLKLEHVVIEKGQFHHERTKSDSGAAVEEADLLALLR 254
           + KL L+ +VI++G+   ++T       V + +LL ++R
Sbjct: 629 YKKLALDALVIQQGRLAEQKT-------VNKDELLQMVR 660

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BLAST of CmaCh04G007790 vs. Swiss-Prot
Match: SMCA5_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens GN=SMARCA5 PE=1 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.3e-52
Identity = 110/257 (42.80%), Postives = 161/257 (62.65%), Query Frame = 1


Query: 2   VVAKLHAILRPFLLRRMKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLE------ 61
           +V +LH +LRPFLLRR+K+DVE  LP KKE+ IY  +++ Q+ +   ++ K ++      
Sbjct: 380 LVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAG 439

Query: 62  ------------------NHL-----SDKGSGYSPVEQIVEQCGKFCLLDRLLTRLFAPK 121
                             NH      ++ G  Y+    +V   GK  +LD+LL +L    
Sbjct: 440 KMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQG 499

Query: 122 HKVLIFSQWTKILDLMEYYFSEKGFEVCRINGGVKLDERKRQIQEFNDGSSKYRIFILST 181
            +VLIFSQ T++LD++E Y   + +E CR++G    DER+  I  +N+ +S   +F+LST
Sbjct: 500 SRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLST 559

Query: 182 QAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRFATAQSIDGRILK 230
           +AGGLGINL  AD  ILYDSDWNPQ+DLQAMDR HRIGQTK V V+RF T  +++ RI++
Sbjct: 560 RAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVE 619

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BLAST of CmaCh04G007790 vs. TrEMBL
Match: A0A0A0KUD3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G038720 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 1.1e-122
Identity = 230/294 (78.23%), Postives = 244/294 (82.99%), Query Frame = 1


Query: 2   VVAKLHAILRPFLLRRMKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSDK 61
           VVAKLH ILRPFLLRRMKSDVELMLPRKKEII+YANMTEYQKNFQEHL+NKTLENHL +K
Sbjct: 403 VVAKLHGILRPFLLRRMKSDVELMLPRKKEIIMYANMTEYQKNFQEHLVNKTLENHLCEK 462

Query: 62  GSG---------------------------------YSPVEQIVEQCGKFCLLDRLLTRL 121
           GSG                                 Y PVEQ+VEQCGKF LLDRLLTRL
Sbjct: 463 GSGRGFKGKLNNLMVQLRKNCNHPDLLESVFDDSYAYPPVEQLVEQCGKFRLLDRLLTRL 522

Query: 122 FAPKHKVLIFSQWTKILDLMEYYFSEKGFEVCRINGGVKLDERKRQIQEFNDGSSKYRIF 181
           F  KHKVLIFSQWTKILD+M+YYFSEKGFEVCRI+G VKLDERKRQIQEFND +S YRIF
Sbjct: 523 FERKHKVLIFSQWTKILDIMDYYFSEKGFEVCRIDGSVKLDERKRQIQEFNDVNSNYRIF 582

Query: 182 ILSTQAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRFATAQSIDG 241
           ILST+AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQ+KPVHVYR ATAQSI+G
Sbjct: 583 ILSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQSKPVHVYRLATAQSIEG 642

Query: 242 RILKRAFSKLKLEHVVIEKGQFHHERTKSDSGAAVEEADLLALLREEDSAEDKI 263
           RILKRAFSKLKLEHVVIEKGQFH ERTK  +   VEE D+LALLREEDSAEDK+
Sbjct: 643 RILKRAFSKLKLEHVVIEKGQFHQERTKPTAADIVEEEDILALLREEDSAEDKM 696

[Close]

BLAST of CmaCh04G007790 vs. TrEMBL
Match: A0A067GVP4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004355mg PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 4.8e-115
Identity = 220/300 (73.33%), Postives = 244/300 (81.33%), Query Frame = 1


Query: 2   VVAKLHAILRPFLLRRMKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSDK 61
           +VAKLHAILRPFLLRRMKSDVE MLPRKKEII+YA MTE+Q+NFQ+HLINKTLENHL +K
Sbjct: 371 MVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREK 430

Query: 62  ----GSG-------------------------------YSPVEQIVEQCGKFCLLDRLLT 121
               G G                               Y PVEQIVEQCGKF LLDRLL 
Sbjct: 431 VFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLA 490

Query: 122 RLFAPKHKVLIFSQWTKILDLMEYYFSEKGFEVCRINGGVKLDERKRQIQEFNDGSSKYR 181
           RLFA  HKVL+FSQWTKILD+MEYYF+EKG+EVCRI+G V+LDERKRQIQ+FND +S YR
Sbjct: 491 RLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYR 550

Query: 182 IFILSTQAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRFATAQSI 241
           IF+LST+AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYR ATAQS+
Sbjct: 551 IFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSV 610

Query: 242 DGRILKRAFSKLKLEHVVIEKGQFHHERTKSDSGAAVEEADLLALLREEDSAEDK-IDTD 266
           +GRILKRAFSKLKLEHVVI KGQFH ERTKS+   A+EE DLLALL++E++AEDK I TD
Sbjct: 611 EGRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQDEETAEDKMIQTD 670

[Close]

BLAST of CmaCh04G007790 vs. TrEMBL
Match: A0A067GLG7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004355mg PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 4.8e-115
Identity = 220/300 (73.33%), Postives = 244/300 (81.33%), Query Frame = 1


Query: 2   VVAKLHAILRPFLLRRMKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSDK 61
           +VAKLHAILRPFLLRRMKSDVE MLPRKKEII+YA MTE+Q+NFQ+HLINKTLENHL +K
Sbjct: 405 MVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREK 464

Query: 62  ----GSG-------------------------------YSPVEQIVEQCGKFCLLDRLLT 121
               G G                               Y PVEQIVEQCGKF LLDRLL 
Sbjct: 465 VFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLA 524

Query: 122 RLFAPKHKVLIFSQWTKILDLMEYYFSEKGFEVCRINGGVKLDERKRQIQEFNDGSSKYR 181
           RLFA  HKVL+FSQWTKILD+MEYYF+EKG+EVCRI+G V+LDERKRQIQ+FND +S YR
Sbjct: 525 RLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYR 584

Query: 182 IFILSTQAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRFATAQSI 241
           IF+LST+AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYR ATAQS+
Sbjct: 585 IFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSV 644

Query: 242 DGRILKRAFSKLKLEHVVIEKGQFHHERTKSDSGAAVEEADLLALLREEDSAEDK-IDTD 266
           +GRILKRAFSKLKLEHVVI KGQFH ERTKS+   A+EE DLLALL++E++AEDK I TD
Sbjct: 645 EGRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQDEETAEDKMIQTD 704

[Close]

BLAST of CmaCh04G007790 vs. TrEMBL
Match: T1WHH4_CITSI (Chromatin-remodeling factor OS=Citrus sinensis PE=2 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 1.8e-114
Identity = 220/300 (73.33%), Postives = 243/300 (81.00%), Query Frame = 1


Query: 2   VVAKLHAILRPFLLRRMKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSDK 61
           +VAKLHAILRPFLLRRMKSDVE MLPRKKEII+YA MTE+Q+NFQ+HLINKTLENHL +K
Sbjct: 405 MVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREK 464

Query: 62  ----GSG-------------------------------YSPVEQIVEQCGKFCLLDRLLT 121
               G G                               Y PVEQIVEQCGKF LLDRLL 
Sbjct: 465 VFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLA 524

Query: 122 RLFAPKHKVLIFSQWTKILDLMEYYFSEKGFEVCRINGGVKLDERKRQIQEFNDGSSKYR 181
           RLFA  HKVL+FSQWTKILD+MEYYFSEKG+EVCRI+G V+LDERK QIQ+FND +S YR
Sbjct: 525 RLFARNHKVLVFSQWTKILDIMEYYFSEKGYEVCRIDGSVRLDERKIQIQDFNDVNSSYR 584

Query: 182 IFILSTQAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRFATAQSI 241
           IF+LST+AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYR ATAQS+
Sbjct: 585 IFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSV 644

Query: 242 DGRILKRAFSKLKLEHVVIEKGQFHHERTKSDSGAAVEEADLLALLREEDSAEDK-IDTD 266
           +GRILKRAFSKLKLEHVVI KGQFH ERTKS+   A+EE DLLALL++E++AEDK I TD
Sbjct: 645 EGRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQDEETAEDKMIQTD 704

[Close]

BLAST of CmaCh04G007790 vs. TrEMBL
Match: V4SED6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024956mg PE=4 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 1.8e-114
Identity = 220/300 (73.33%), Postives = 243/300 (81.00%), Query Frame = 1


Query: 2   VVAKLHAILRPFLLRRMKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSDK 61
           +VAKLHAILRPFLLRRMKSDVE MLPRKKEII+YA MTE+Q+NFQ+HLINKTLENHL +K
Sbjct: 405 MVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREK 464

Query: 62  ----GSG-------------------------------YSPVEQIVEQCGKFCLLDRLLT 121
               G G                               Y PVEQIVEQCGKF LLDRLL 
Sbjct: 465 VFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLA 524

Query: 122 RLFAPKHKVLIFSQWTKILDLMEYYFSEKGFEVCRINGGVKLDERKRQIQEFNDGSSKYR 181
           RLFA  HKVL+FSQWTKILD+MEYYFSEKG+EVCRI+G V+LDERK QIQ+FND +S YR
Sbjct: 525 RLFARNHKVLVFSQWTKILDIMEYYFSEKGYEVCRIDGSVRLDERKIQIQDFNDVNSSYR 584

Query: 182 IFILSTQAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRFATAQSI 241
           IF+LST+AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYR ATAQS+
Sbjct: 585 IFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSV 644

Query: 242 DGRILKRAFSKLKLEHVVIEKGQFHHERTKSDSGAAVEEADLLALLREEDSAEDK-IDTD 266
           +GRILKRAFSKLKLEHVVI KGQFH ERTKS+   A+EE DLLALL++E++AEDK I TD
Sbjct: 645 EGRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQDEETAEDKMIQTD 704

[Close]

BLAST of CmaCh04G007790 vs. TAIR10
Match: AT5G66750.1 (AT5G66750.1 chromatin remodeling 1)

HSP 1 Score: 383.6 bits (984), Expect = 9.7e-107
Identity = 200/299 (66.89%), Postives = 232/299 (77.59%), Query Frame = 1


Query: 2   VVAKLHAILRPFLLRRMKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSD- 61
           VV+KLH ILRPF+LRRMK DVEL LPRKKEII+YA MT++QK FQEHL+N TLE HL + 
Sbjct: 416 VVSKLHGILRPFILRRMKCDVELSLPRKKEIIMYATMTDHQKKFQEHLVNNTLEAHLGEN 475

Query: 62  --KGSG-------------------------------YSPVEQIVEQCGKFCLLDRLLTR 121
             +G G                               Y PVE+IV QCGKF LL+RLL R
Sbjct: 476 AIRGQGWKGKLNNLVIQLRKNCNHPDLLQGQIDGSYLYPPVEEIVGQCGKFRLLERLLVR 535

Query: 122 LFAPKHKVLIFSQWTKILDLMEYYFSEKGFEVCRINGGVKLDERKRQIQEFNDGSSKYRI 181
           LFA  HKVLIFSQWTK+LD+M+YYFSEKGFEVCRI+G VKLDER+RQI++F+D  S   I
Sbjct: 536 LFANNHKVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSI 595

Query: 182 FILSTQAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRFATAQSID 241
           F+LST+AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYR +TAQSI+
Sbjct: 596 FLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIE 655

Query: 242 GRILKRAFSKLKLEHVVIEKGQFHHERTKSDSGAAVEEADLLALLREEDSAEDK-IDTD 266
            R+LKRA+SKLKLEHVVI +GQFH ER KS +   +EE D+LALL+E+++AEDK I TD
Sbjct: 656 TRVLKRAYSKLKLEHVVIGQGQFHQERAKSST--PLEEEDILALLKEDETAEDKLIQTD 712

[Close]

BLAST of CmaCh04G007790 vs. TAIR10
Match: AT5G18620.2 (AT5G18620.2 chromatin remodeling factor17)

HSP 1 Score: 219.5 bits (558), Expect = 2.4e-57
Identity = 120/279 (43.01%), Postives = 171/279 (61.29%), Query Frame = 1


Query: 2   VVAKLHAILRPFLLRRMKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLE------ 61
           VV +LH +LRPFLLRR+KSDVE  LP KKE I+   M++ QK + + L+ K LE      
Sbjct: 394 VVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNGGG 453

Query: 62  ----------------NHL-----SDKGSGYSPVEQIVEQCGKFCLLDRLLTRLFAPKHK 121
                           NH      ++ G  Y+  + +V   GK  LLD+LL +L     +
Sbjct: 454 ERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLVTNAGKMVLLDKLLPKLKDRDSR 513

Query: 122 VLIFSQWTKILDLMEYYFSEKGFEVCRINGGVKLDERKRQIQEFNDGSSKYRIFILSTQA 181
           VLIFSQ T++LD++E Y   +G++ CRI+G    DER   I+ +N   S+  +F+LST+A
Sbjct: 514 VLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRA 573

Query: 182 GGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRFATAQSIDGRILKRA 241
           GGLGINL  AD  ILYDSDWNPQ+DLQA DR HRIGQ K V V+RF T  +I+ ++++RA
Sbjct: 574 GGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIERA 633

Query: 242 FSKLKLEHVVIEKGQFHHERTKSDSGAAVEEADLLALLR 254
           + KL L+ +VI++G+   ++T       V + +LL ++R
Sbjct: 634 YKKLALDALVIQQGRLAEQKT-------VNKDELLQMVR 665

[Close]

BLAST of CmaCh04G007790 vs. TAIR10
Match: AT3G06400.3 (AT3G06400.3 chromatin-remodeling protein 11)

HSP 1 Score: 216.9 bits (551), Expect = 1.6e-56
Identity = 119/279 (42.65%), Postives = 170/279 (60.93%), Query Frame = 1


Query: 2   VVAKLHAILRPFLLRRMKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLE------ 61
           VV +LH +LRPFLLRR+KSDVE  LP KKE I+   M++ QK + + L+ K LE      
Sbjct: 389 VVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEAVNAGG 448

Query: 62  ----------------NHL-----SDKGSGYSPVEQIVEQCGKFCLLDRLLTRLFAPKHK 121
                           NH      ++ G  Y+  + ++   GK  LLD+LL +L     +
Sbjct: 449 ERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSR 508

Query: 122 VLIFSQWTKILDLMEYYFSEKGFEVCRINGGVKLDERKRQIQEFNDGSSKYRIFILSTQA 181
           VLIFSQ T++LD++E Y   +G+  CRI+G    DER   I+ +N   S+  +F+LST+A
Sbjct: 509 VLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRA 568

Query: 182 GGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRFATAQSIDGRILKRA 241
           GGLGINL  AD  ILYDSDWNPQ+DLQA DR HRIGQ K V V+RF T  +I+ ++++RA
Sbjct: 569 GGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIERA 628

Query: 242 FSKLKLEHVVIEKGQFHHERTKSDSGAAVEEADLLALLR 254
           + KL L+ +VI++G+   ++T       V + +LL ++R
Sbjct: 629 YKKLALDALVIQQGRLAEQKT-------VNKDELLQMVR 660

[Close]

BLAST of CmaCh04G007790 vs. TAIR10
Match: AT5G19310.1 (AT5G19310.1 Homeotic gene regulator)

HSP 1 Score: 193.4 bits (490), Expect = 1.9e-49
Identity = 108/271 (39.85%), Postives = 163/271 (60.15%), Query Frame = 1


Query: 1   MVVAKLHAILRPFLLRRMKSDVELMLPRKKEIIIYANMTEYQKNFQEHLIN--------- 60
           +++ +LH ++RPFLLRR KS+VE  LP K ++I+  +M+ +QK + + + +         
Sbjct: 594 LIINRLHHVIRPFLLRRKKSEVEKFLPGKTQVILKCDMSAWQKLYYKQVTDVGRVGLHSG 653

Query: 61  ----KTLENHLSDK-----------GSGYSPVE--QIVEQCGKFCLLDRLLTRLFAPKHK 120
               K+L+N                G+ Y+  +  +IV   GKF LLDRLL +L    H+
Sbjct: 654 NGKSKSLQNLTMQLRKCCNHPYLFVGADYNMCKKPEIVRASGKFELLDRLLPKLKKAGHR 713

Query: 121 VLIFSQWTKILDLMEYYFSEKGFEVCRINGGVKLDERKRQIQEFNDGSSKYRIFILSTQA 180
           +L+FSQ T+++DL+E Y S   +   R++G  K D+R   +++FN+  S Y +F+LST+A
Sbjct: 714 ILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGILLKQFNEPDSPYFMFLLSTRA 773

Query: 181 GGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRFATAQSIDGRILKRA 240
           GGLG+NL  ADT I++DSDWNPQMD QA DR HRIGQ K V V+   +  SI+  IL+RA
Sbjct: 774 GGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSIGSIEEVILERA 833

Query: 241 FSKLKLEHVVIEKGQFHHERTKSDSGAAVEE 246
             K+ ++  VI+ G F+   T  D    +EE
Sbjct: 834 KQKMGIDAKVIQAGLFNTTSTAQDRREMLEE 864

[Close]

BLAST of CmaCh04G007790 vs. TAIR10
Match: AT2G13370.1 (AT2G13370.1 chromatin remodeling 5)

HSP 1 Score: 189.5 bits (480), Expect = 2.7e-48
Identity = 119/305 (39.02%), Postives = 179/305 (58.69%), Query Frame = 1


Query: 3    VAKLHAILRPFLLRRMKSDVELMLPRKKEIII-------------------YANMTEYQK 62
            +A LH  LRP +LRR+  DVE  LP K E I+                   + ++ +  +
Sbjct: 832  LANLHLELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVR 891

Query: 63   NFQEHLINKTLE-----NH-----LSDKGSG-----YSPVEQIVEQCGKFCLLDRLLTRL 122
              Q  L+N  +E     NH      +D G G      S +++I+   GK  +LD+LL RL
Sbjct: 892  GNQVSLLNIVVELKKCCNHPFLFESADHGYGGDINDNSKLDKIILSSGKLVILDKLLVRL 951

Query: 123  FAPKHKVLIFSQWTKILDLMEYYFSEKGFEVCRINGGVKLDERKRQIQEFNDGSSKYRIF 182
               KH+VLIFSQ  ++LD++  Y S +GF+  R++G  K + R++ +  FN  +S    F
Sbjct: 952  RETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFNAPASDDFCF 1011

Query: 183  ILSTQAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRFATAQSIDG 242
            +LST+AGGLGINL  ADT +++DSDWNPQ DLQAM R HRIGQ + V++YRF T++S++ 
Sbjct: 1012 LLSTRAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEE 1071

Query: 243  RILKRAFSKLKLEHVVIEK--GQFHHERTKSDSGAAVEEADLLALLR---EEDSAEDKID 269
             IL+RA  K+ L+H+VI+K   +   E+ ++  G+  ++ +L A+LR   EE   EDK D
Sbjct: 1072 EILERAKRKMVLDHLVIQKLNAEGRLEKRETKKGSNFDKNELSAILRFGAEELFKEDKND 1131

[Close]

BLAST of CmaCh04G007790 vs. NCBI nr
Match: gi|778690601|ref|XP_011653137.1| (PREDICTED: ATP-dependent DNA helicase DDM1 [Cucumis sativus])

HSP 1 Score: 447.6 bits (1150), Expect = 1.5e-122
Identity = 230/294 (78.23%), Postives = 244/294 (82.99%), Query Frame = 1


Query: 2   VVAKLHAILRPFLLRRMKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSDK 61
           VVAKLH ILRPFLLRRMKSDVELMLPRKKEII+YANMTEYQKNFQEHL+NKTLENHL +K
Sbjct: 403 VVAKLHGILRPFLLRRMKSDVELMLPRKKEIIMYANMTEYQKNFQEHLVNKTLENHLCEK 462

Query: 62  GSG---------------------------------YSPVEQIVEQCGKFCLLDRLLTRL 121
           GSG                                 Y PVEQ+VEQCGKF LLDRLLTRL
Sbjct: 463 GSGRGFKGKLNNLMVQLRKNCNHPDLLESVFDDSYAYPPVEQLVEQCGKFRLLDRLLTRL 522

Query: 122 FAPKHKVLIFSQWTKILDLMEYYFSEKGFEVCRINGGVKLDERKRQIQEFNDGSSKYRIF 181
           F  KHKVLIFSQWTKILD+M+YYFSEKGFEVCRI+G VKLDERKRQIQEFND +S YRIF
Sbjct: 523 FERKHKVLIFSQWTKILDIMDYYFSEKGFEVCRIDGSVKLDERKRQIQEFNDVNSNYRIF 582

Query: 182 ILSTQAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRFATAQSIDG 241
           ILST+AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQ+KPVHVYR ATAQSI+G
Sbjct: 583 ILSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQSKPVHVYRLATAQSIEG 642

Query: 242 RILKRAFSKLKLEHVVIEKGQFHHERTKSDSGAAVEEADLLALLREEDSAEDKI 263
           RILKRAFSKLKLEHVVIEKGQFH ERTK  +   VEE D+LALLREEDSAEDK+
Sbjct: 643 RILKRAFSKLKLEHVVIEKGQFHQERTKPTAADIVEEEDILALLREEDSAEDKM 696

[Close]

BLAST of CmaCh04G007790 vs. NCBI nr
Match: gi|659107555|ref|XP_008453735.1| (PREDICTED: ATP-dependent DNA helicase DDM1 isoform X1 [Cucumis melo])

HSP 1 Score: 446.4 bits (1147), Expect = 3.4e-122
Identity = 230/294 (78.23%), Postives = 244/294 (82.99%), Query Frame = 1


Query: 2   VVAKLHAILRPFLLRRMKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSDK 61
           VVAKLH ILRPFLLRRMKSDVELMLPRKKEII+YA MTEYQKNFQEHL+NKTLENHLS+K
Sbjct: 403 VVAKLHGILRPFLLRRMKSDVELMLPRKKEIIMYATMTEYQKNFQEHLVNKTLENHLSEK 462

Query: 62  GSG---------------------------------YSPVEQIVEQCGKFCLLDRLLTRL 121
           GSG                                 Y PVEQ+VEQCGKF LLDRLLTRL
Sbjct: 463 GSGRGFKGKLNNLMVQLRKNCNHPDLLESVFDESYTYPPVEQLVEQCGKFRLLDRLLTRL 522

Query: 122 FAPKHKVLIFSQWTKILDLMEYYFSEKGFEVCRINGGVKLDERKRQIQEFNDGSSKYRIF 181
           F  KHKVLIFSQWTKILD+M+YYFSEKGFEVCRI+G VKLDERKRQIQEFND +S YRIF
Sbjct: 523 FERKHKVLIFSQWTKILDIMDYYFSEKGFEVCRIDGSVKLDERKRQIQEFNDVNSNYRIF 582

Query: 182 ILSTQAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRFATAQSIDG 241
           ILST+AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQ+KPVHVYR ATAQSI+G
Sbjct: 583 ILSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQSKPVHVYRLATAQSIEG 642

Query: 242 RILKRAFSKLKLEHVVIEKGQFHHERTKSDSGAAVEEADLLALLREEDSAEDKI 263
           RILKRAFSKLKLEHVVIEKGQFH ERTK +    VEE D+LALLREEDSAEDK+
Sbjct: 643 RILKRAFSKLKLEHVVIEKGQFHQERTKPNDPDIVEEDDILALLREEDSAEDKM 696

[Close]

BLAST of CmaCh04G007790 vs. NCBI nr
Match: gi|659107557|ref|XP_008453736.1| (PREDICTED: ATP-dependent DNA helicase DDM1 isoform X2 [Cucumis melo])

HSP 1 Score: 446.4 bits (1147), Expect = 3.4e-122
Identity = 230/294 (78.23%), Postives = 244/294 (82.99%), Query Frame = 1


Query: 2   VVAKLHAILRPFLLRRMKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSDK 61
           VVAKLH ILRPFLLRRMKSDVELMLPRKKEII+YA MTEYQKNFQEHL+NKTLENHLS+K
Sbjct: 403 VVAKLHGILRPFLLRRMKSDVELMLPRKKEIIMYATMTEYQKNFQEHLVNKTLENHLSEK 462

Query: 62  GSG---------------------------------YSPVEQIVEQCGKFCLLDRLLTRL 121
           GSG                                 Y PVEQ+VEQCGKF LLDRLLTRL
Sbjct: 463 GSGRGFKGKLNNLMVQLRKNCNHPDLLESVFDESYTYPPVEQLVEQCGKFRLLDRLLTRL 522

Query: 122 FAPKHKVLIFSQWTKILDLMEYYFSEKGFEVCRINGGVKLDERKRQIQEFNDGSSKYRIF 181
           F  KHKVLIFSQWTKILD+M+YYFSEKGFEVCRI+G VKLDERKRQIQEFND +S YRIF
Sbjct: 523 FERKHKVLIFSQWTKILDIMDYYFSEKGFEVCRIDGSVKLDERKRQIQEFNDVNSNYRIF 582

Query: 182 ILSTQAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRFATAQSIDG 241
           ILST+AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQ+KPVHVYR ATAQSI+G
Sbjct: 583 ILSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQSKPVHVYRLATAQSIEG 642

Query: 242 RILKRAFSKLKLEHVVIEKGQFHHERTKSDSGAAVEEADLLALLREEDSAEDKI 263
           RILKRAFSKLKLEHVVIEKGQFH ERTK +    VEE D+LALLREEDSAEDK+
Sbjct: 643 RILKRAFSKLKLEHVVIEKGQFHQERTKPNDPDIVEEDDILALLREEDSAEDKM 696

[Close]

BLAST of CmaCh04G007790 vs. NCBI nr
Match: gi|641860838|gb|KDO79527.1| (hypothetical protein CISIN_1g004355mg [Citrus sinensis])

HSP 1 Score: 422.2 bits (1084), Expect = 7.0e-115
Identity = 220/300 (73.33%), Postives = 244/300 (81.33%), Query Frame = 1


Query: 2   VVAKLHAILRPFLLRRMKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSDK 61
           +VAKLHAILRPFLLRRMKSDVE MLPRKKEII+YA MTE+Q+NFQ+HLINKTLENHL +K
Sbjct: 371 MVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREK 430

Query: 62  ----GSG-------------------------------YSPVEQIVEQCGKFCLLDRLLT 121
               G G                               Y PVEQIVEQCGKF LLDRLL 
Sbjct: 431 VFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLA 490

Query: 122 RLFAPKHKVLIFSQWTKILDLMEYYFSEKGFEVCRINGGVKLDERKRQIQEFNDGSSKYR 181
           RLFA  HKVL+FSQWTKILD+MEYYF+EKG+EVCRI+G V+LDERKRQIQ+FND +S YR
Sbjct: 491 RLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYR 550

Query: 182 IFILSTQAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRFATAQSI 241
           IF+LST+AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYR ATAQS+
Sbjct: 551 IFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSV 610

Query: 242 DGRILKRAFSKLKLEHVVIEKGQFHHERTKSDSGAAVEEADLLALLREEDSAEDK-IDTD 266
           +GRILKRAFSKLKLEHVVI KGQFH ERTKS+   A+EE DLLALL++E++AEDK I TD
Sbjct: 611 EGRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQDEETAEDKMIQTD 670

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BLAST of CmaCh04G007790 vs. NCBI nr
Match: gi|641860836|gb|KDO79525.1| (hypothetical protein CISIN_1g004355mg [Citrus sinensis])

HSP 1 Score: 422.2 bits (1084), Expect = 7.0e-115
Identity = 220/300 (73.33%), Postives = 244/300 (81.33%), Query Frame = 1


Query: 2   VVAKLHAILRPFLLRRMKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSDK 61
           +VAKLHAILRPFLLRRMKSDVE MLPRKKEII+YA MTE+Q+NFQ+HLINKTLENHL +K
Sbjct: 405 MVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREK 464

Query: 62  ----GSG-------------------------------YSPVEQIVEQCGKFCLLDRLLT 121
               G G                               Y PVEQIVEQCGKF LLDRLL 
Sbjct: 465 VFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLA 524

Query: 122 RLFAPKHKVLIFSQWTKILDLMEYYFSEKGFEVCRINGGVKLDERKRQIQEFNDGSSKYR 181
           RLFA  HKVL+FSQWTKILD+MEYYF+EKG+EVCRI+G V+LDERKRQIQ+FND +S YR
Sbjct: 525 RLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYR 584

Query: 182 IFILSTQAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRFATAQSI 241
           IF+LST+AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYR ATAQS+
Sbjct: 585 IFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSV 644

Query: 242 DGRILKRAFSKLKLEHVVIEKGQFHHERTKSDSGAAVEEADLLALLREEDSAEDK-IDTD 266
           +GRILKRAFSKLKLEHVVI KGQFH ERTKS+   A+EE DLLALL++E++AEDK I TD
Sbjct: 645 EGRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQDEETAEDKMIQTD 704

The following BLAST results are available for this feature:

BLAST of CmaCh04G007790 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DDM1_ARATH	1.7e-105	66.89	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana GN=DDM1 PE=1 SV=1	[more]
ISW2_ORYSJ	2.5e-56	43.37	Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japoni...	[more]
CHR17_ARATH	4.3e-56	43.01	ISWI chromatin-remodeling complex ATPase CHR17 OS=Arabidopsis thaliana GN=CHR17 ...	[more]
ISW2_ARATH	2.8e-55	42.65	ISWI chromatin-remodeling complex ATPase CHR11 OS=Arabidopsis thaliana GN=CHR11 ...	[more]
SMCA5_HUMAN	1.3e-52	42.80	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]

BLAST of CmaCh04G007790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUD3_CUCSA	1.1e-122	78.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G038720 PE=4 SV=1	[more]
A0A067GVP4_CITSI	4.8e-115	73.33	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004355mg PE=4 SV=1	[more]
A0A067GLG7_CITSI	4.8e-115	73.33	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004355mg PE=4 SV=1	[more]
T1WHH4_CITSI	1.8e-114	73.33	Chromatin-remodeling factor OS=Citrus sinensis PE=2 SV=1	[more]
V4SED6_9ROSI	1.8e-114	73.33	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024956mg PE=4 SV=1	[more]

BLAST of CmaCh04G007790 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G66750.1	9.7e-107	66.89	chromatin remodeling 1	[more]
AT5G18620.2	2.4e-57	43.01	chromatin remodeling factor17	[more]
AT3G06400.3	1.6e-56	42.65	chromatin-remodeling protein 11	[more]
AT5G19310.1	1.9e-49	39.85	Homeotic gene regulator	[more]
AT2G13370.1	2.7e-48	39.02	chromatin remodeling 5	[more]

BLAST of CmaCh04G007790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778690601\|ref\|XP_011653137.1\|	1.5e-122	78.23	PREDICTED: ATP-dependent DNA helicase DDM1 [Cucumis sativus]	[more]
gi\|659107555\|ref\|XP_008453735.1\|	3.4e-122	78.23	PREDICTED: ATP-dependent DNA helicase DDM1 isoform X1 [Cucumis melo]	[more]
gi\|659107557\|ref\|XP_008453736.1\|	3.4e-122	78.23	PREDICTED: ATP-dependent DNA helicase DDM1 isoform X2 [Cucumis melo]	[more]
gi\|641860838\|gb\|KDO79527.1\|	7.0e-115	73.33	hypothetical protein CISIN_1g004355mg [Citrus sinensis]	[more]
gi\|641860836\|gb\|KDO79525.1\|	7.0e-115	73.33	hypothetical protein CISIN_1g004355mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000330	SNF2_N
IPR001650	Helicase_C
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008283	cell proliferation
biological_process	GO:0044030	regulation of DNA methylation
biological_process	GO:0008150	biological_process
biological_process	GO:0006099	tricarboxylic acid cycle
biological_process	GO:0006121	mitochondrial electron transport, succinate to ubiquinone
biological_process	GO:0031048	chromatin silencing by small RNA
biological_process	GO:0016246	RNA interference
biological_process	GO:0006349	regulation of gene expression by genetic imprinting
biological_process	GO:0032197	transposition, RNA-mediated
biological_process	GO:0051574	positive regulation of histone H3-K9 methylation
biological_process	GO:0090241	negative regulation of histone H4 acetylation
biological_process	GO:0006346	methylation-dependent chromatin silencing
biological_process	GO:0006344	maintenance of chromatin silencing
biological_process	GO:0016572	histone phosphorylation
biological_process	GO:0009294	DNA mediated transformation
biological_process	GO:0032508	DNA duplex unwinding
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005657	replication fork
cellular_component	GO:0005749	mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004003	ATP-dependent DNA helicase activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0050660	flavin adenine dinucleotide binding
molecular_function	GO:0008177	succinate dehydrogenase (ubiquinone) activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G007790.1	CmaCh04G007790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000330	SNF2-related, N-terminal domain	PFAM	PF00176	SNF2_N	coord: 4..55 score: 4.
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 84..190 score: 2.8
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 106..190 score: 4.6
IPR001650	Helicase, C-terminal	PROFILE	PS51194	HELICASE_CTER	coord: 80..233 score:
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 70..227 score: 2.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 19..236 score: 2.19
None	No IPR available	PANTHER	PTHR10799	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED	coord: 2..261 score: 1.9E
None	No IPR available	PANTHER	PTHR10799:SF606	PROTEIN PQN-21, ISOFORM B	coord: 2..261 score: 1.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G007790	Cucsa.201370	Cucumber (Gy14) v1	cgycmaB0596
CmaCh04G007790	Cla014526	Watermelon (97103) v1	cmawmB677
CmaCh04G007790	Csa4G038720	Cucumber (Chinese Long) v2	cmacuB713
CmaCh04G007790	MELO3C017558	Melon (DHL92) v3.5.1	cmameB694
CmaCh04G007790	ClCG07G009110	Watermelon (Charleston Gray)	cmawcgB668
CmaCh04G007790	CSPI04G04980	Wild cucumber (PI 183967)	cmacpiB721
CmaCh04G007790	CmoCh16G007120	Cucurbita moschata (Rifu)	cmacmoB700
CmaCh04G007790	CmoCh04G008370	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G007790	Cp4.1LG14g01690	Cucurbita pepo (Zucchini)	cmacpeB714
CmaCh04G007790	MELO3C017558.2	Melon (DHL92) v3.6.1	cmamedB782
CmaCh04G007790	CsaV3_4G005100	Cucumber (Chinese Long) v3	cmacucB0847
CmaCh04G007790	Cla97C07G136040	Watermelon (97103) v2	cmawmbB774
CmaCh04G007790	CsGy4G004890	Cucumber (Gy14) v2	cgybcmaB547
CmaCh04G007790	Carg05773	Silver-seed gourd	carcmaB1414
CmaCh04G007790	Carg14178	Silver-seed gourd	carcmaB1288

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G007790	CmaCh16G006550	Cucurbita maxima (Rimu)	cmacmaB350

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G007790	Watermelon (97103) v2	cmawmbB712
CmaCh04G007790	Wax gourd	cmawgoB0846
CmaCh04G007790	Cucurbita maxima (Rimu)	cmacmaB546
CmaCh04G007790	Cucurbita moschata (Rifu)	cmacmoB727
CmaCh04G007790	Wild cucumber (PI 183967)	cmacpiB785
CmaCh04G007790	Melon (DHL92) v3.5.1	cmameB710
CmaCh04G007790	Watermelon (Charleston Gray)	cmawcgB639
CmaCh04G007790	Watermelon (97103) v1	cmawmB715
CmaCh04G007790	Cucurbita pepo (Zucchini)	cmacpeB702
CmaCh04G007790	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G007790	Cucurbita pepo (Zucchini)	cmacpeB731
CmaCh04G007790	Cucurbita pepo (Zucchini)	cmacpeB741
CmaCh04G007790	Bottle gourd (USVL1VR-Ls)	cmalsiB698