CmoCh04G006840 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATAGCGATTCAGGAAAGCTAAGCAAGCTCCTTCAATGCTACCTCCCACTGCAACTCAACCACCACCATTAATGGACCATAAATCAACCGCAGATGATGAGCCTTATAATTGGACCAACCACATTACAAACCCAAACCCTCACCTTCCAATCTCTCCATATGGACGACAAATACAGCACTAATGGTGGAGCAGCGGCGGCCAGCTCGTCGGCTGTTGCCGATGAAAGCCTTAGCAGTAGTGGCATGCGGGTGGCGGACACGTTGCTCCGCCTTGCGTCGATGGGGCTCTGCGTGGCGGCGCTTATTGTGATGCTCAAGAACTCCCAGACTGACGACTATGGCTCTGTTGCTTACTCCGACCTTGGAGCTTTCAAGTATGTTTAAGAAAAACCAAAAAGGAAACCCCTTTTCGTCATTTTTTTAATCTATGGAGTTTTCTTTGTCTTTTTTCTATGAAGTCTTGTCGGATCTCAAATGGGTTTTTGAAAATTTTGGTTAATGATTTGGTTTTTAGCTTGTAGGACTTAAAATAGGTCTATTATACCAGTAGTATCAGAGTAATATCCTTAATTTAGTTATATTATAGAATTTTCGAGTATTTGAATAGATAAATTGTTGCGAGCCTTCAAGATGTAGGATTTGTTAGATTACTAATATACTCTCCAGAAAAGGAGTTGGTTTAGATGACACTAAATAGATAGATGACTATTTAAGAGGAGGATCAATAGTGTGACCCTGAGGAATCACGACTCTCCACAATGGTATGATATTGTTCACTTTGAGCATAAGCTCTCGTGGCTTTGCTTTGGGCTTCTGCAAATGGCCTCATAGCAATGGAGATAGTATTCATCCGTTATAAACCCTTGATCTTTCACTAAATTAACCTGTTTGACTCACTTCCAATAATCCTCAACAGTGACATCCCATGTCAGTCGATGAGGAGAATGAATAATTCTTTATAAGGGTGTGGAAATCTCTCCCACTAATTGTGTTTTATAAATTTTGAGAGCAAAGAGAATAATATCAGCTAGTGGTGGATTATGTTCGAGGAGCAGTGGACTATTATGGTTATAATAATGTTGGTAAGTAAATGTAGGTTTTTGGTGCATGTTAATGGAATATGTGCTGGGTACTCGTTCCTGTCGGCGGTGGTGGCGGCCATGTCGCGACCTTCAACCATGTCTAAGGCTTGGACTCTGTTCTTCTTGGATCAGGTTGGGTTGATATTAATAGAAAGTAGATAATAATTGAGATGAATCAAATTGTAATTCATTGTGTACCTCGCATCTCCATAGCTGCTGACCTACATAACCCTGGCGGCGGGGACGGTGTCGACGGAGGTGCTGTACTTGGCCTACAATGGGGACACTGAAATAACATGGAGTGCGGCATGTGGGTCGTTTGGGAAGTTCTGCAGCAAAGCCACGGCCTCGGTGGTGATCACCTTCGTTGTGGTTGCTTTCTATGCTTTCATTTCCATTCTGTCTTCTTACAAGCTGTTCGGTAGATACAGTGCTCCCATGCCGGATCCCTCCAAGCAACTTGAGATCTCTGCCTTCTCTGGGCGATGCTGAATTGTTTTTATACACTCATTGGGTTTAATGAACCATTTGTGAAGAGTGTGTCATGAACGATTGTATAAACTGTTTGTGCAAAACCAAAACTTTTATGGTCGTGTACTCAAGTTTAATAATTATAAACCCTTTGGTTTGGAACTTTTATTTGTTTATTGTCCATGATTCCATTTTTCCAAAATGGGTTTTAGTTATTCCCTTTGGAACTTAGTCGTTAGAGGTGCAAACGGCCTCAATTAACTATTTTGTGTAACCGTTCAAACCCACTGCTAGTACATGTTGTCCATTTTGACTTGTTACGTAT AATAGCGATTCAGGAAAGCTAAGCAAGCTCCTTCAATGCTACCTCCCACTGCAACTCAACCACCACCATTAATGGACCATAAATCAACCGCAGATGATGAGCCTTATAATTGGACCAACCACATTACAAACCCAAACCCTCACCTTCCAATCTCTCCATATGGACGACAAATACAGCACTAATGGTGGAGCAGCGGCGGCCAGCTCGTCGGCTGTTGCCGATGAAAGCCTTAGCAGTAGTGGCATGCGGGTGGCGGACACGTTGCTCCGCCTTGCGTCGATGGGGCTCTGCGTGGCGGCGCTTATTGTGATGCTCAAGAACTCCCAGACTGACGACTATGGCTCTGTTGCTTACTCCGACCTTGGAGCTTTCAAGTTTTTGGTGCATGTTAATGGAATATGTGCTGGGTACTCGTTCCTGTCGGCGGTGGTGGCGGCCATGTCGCGACCTTCAACCATGTCTAAGGCTTGGACTCTGTTCTTCTTGGATCAGCTGCTGACCTACATAACCCTGGCGGCGGGGACGGTGTCGACGGAGGTGCTGTACTTGGCCTACAATGGGGACACTGAAATAACATGGAGTGCGGCATGTGGGTCGTTTGGGAAGTTCTGCAGCAAAGCCACGGCCTCGGTGGTGATCACCTTCGTTGTGGTTGCTTTCTATGCTTTCATTTCCATTCTGTCTTCTTACAAGCTGTTCGGTAGATACAGTGCTCCCATGCCGGATCCCTCCAAGCAACTTGAGATCTCTGCCTTCTCTGGGCGATGCTGAATTGTTTTTATACACTCATTGGGTTTAATGAACCATTTGTGAAGAGTGTGTCATGAACGATTGTATAAACTGTTTGTGCAAAACCAAAACTTTTATGGTCGTGTACTCAAGTTTAATAATTATAAACCCTTTGGTTTGGAACTTTTATTTGTTTATTGTCCATGATTCCATTTTTCCAAAATGGGTTTTAGTTATTCCCTTTGGAACTTAGTCGTTAGAGGTGCAAACGGCCTCAATTAACTATTTTGTGTAACCGTTCAAACCCACTGCTAGTACATGTTGTCCATTTTGACTTGTTACGTAT ATGATGAGCCTTATAATTGGACCAACCACATTACAAACCCAAACCCTCACCTTCCAATCTCTCCATATGGACGACAAATACAGCACTAATGGTGGAGCAGCGGCGGCCAGCTCGTCGGCTGTTGCCGATGAAAGCCTTAGCAGTAGTGGCATGCGGGTGGCGGACACGTTGCTCCGCCTTGCGTCGATGGGGCTCTGCGTGGCGGCGCTTATTGTGATGCTCAAGAACTCCCAGACTGACGACTATGGCTCTGTTGCTTACTCCGACCTTGGAGCTTTCAAGTTTTTGGTGCATGTTAATGGAATATGTGCTGGGTACTCGTTCCTGTCGGCGGTGGTGGCGGCCATGTCGCGACCTTCAACCATGTCTAAGGCTTGGACTCTGTTCTTCTTGGATCAGCTGCTGACCTACATAACCCTGGCGGCGGGGACGGTGTCGACGGAGGTGCTGTACTTGGCCTACAATGGGGACACTGAAATAACATGGAGTGCGGCATGTGGGTCGTTTGGGAAGTTCTGCAGCAAAGCCACGGCCTCGGTGGTGATCACCTTCGTTGTGGTTGCTTTCTATGCTTTCATTTCCATTCTGTCTTCTTACAAGCTGTTCGGTAGATACAGTGCTCCCATGCCGGATCCCTCCAAGCAACTTGAGATCTCTGCCTTCTCTGGGCGATGCTGA
BLAST of CmoCh04G006840 vs. Swiss-Prot
Match: CSPLD_RICCO (CASP-like protein 2A1 OS=Ricinus communis GN=RCOM_0477780 PE=2 SV=1) HSP 1 Score: 228.4 bits (581), Expect = 7.7e-59 Identity = 114/180 (63.33%), Postives = 141/180 (78.33%), Query Frame = 1
BLAST of CmoCh04G006840 vs. Swiss-Prot
Match: CSPLA_POPTR (CASP-like protein 2A1 OS=Populus trichocarpa GN=POPTRDRAFT_834139 PE=3 SV=1) HSP 1 Score: 227.6 bits (579), Expect = 1.3e-58 Identity = 117/173 (67.63%), Postives = 139/173 (80.35%), Query Frame = 1
BLAST of CmoCh04G006840 vs. Swiss-Prot
Match: CSPLA_VITVI (CASP-like protein 2A1 OS=Vitis vinifera GN=VIT_01s0010g01870 PE=2 SV=1) HSP 1 Score: 227.6 bits (579), Expect = 1.3e-58 Identity = 114/179 (63.69%), Postives = 139/179 (77.65%), Query Frame = 1
BLAST of CmoCh04G006840 vs. Swiss-Prot
Match: CSPLA_SOYBN (CASP-like protein 2A2 OS=Glycine max PE=2 SV=1) HSP 1 Score: 227.3 bits (578), Expect = 1.7e-58 Identity = 114/180 (63.33%), Postives = 142/180 (78.89%), Query Frame = 1
BLAST of CmoCh04G006840 vs. Swiss-Prot
Match: CSPL1_GOSHI (CASP-like protein F16 OS=Gossypium hirsutum GN=F16 PE=2 SV=1) HSP 1 Score: 219.2 bits (557), Expect = 4.7e-56 Identity = 116/196 (59.18%), Postives = 149/196 (76.02%), Query Frame = 1
BLAST of CmoCh04G006840 vs. TrEMBL
Match: A0A0A0KVC7_CUCSA (CASP-like protein OS=Cucumis sativus GN=Csa_4G064080 PE=3 SV=1) HSP 1 Score: 299.7 bits (766), Expect = 3.0e-78 Identity = 159/203 (78.33%), Postives = 177/203 (87.19%), Query Frame = 1
BLAST of CmoCh04G006840 vs. TrEMBL
Match: V4VR20_9ROSI (CASP-like protein OS=Citrus clementina GN=CICLE_v10022266mg PE=3 SV=1) HSP 1 Score: 235.3 bits (599), Expect = 7.1e-59 Identity = 125/207 (60.39%), Postives = 155/207 (74.88%), Query Frame = 1
BLAST of CmoCh04G006840 vs. TrEMBL
Match: A0A067E5W9_CITSI (CASP-like protein OS=Citrus sinensis GN=CISIN_1g028477mg PE=3 SV=1) HSP 1 Score: 235.3 bits (599), Expect = 7.1e-59 Identity = 125/207 (60.39%), Postives = 155/207 (74.88%), Query Frame = 1
BLAST of CmoCh04G006840 vs. TrEMBL
Match: A0A0B2PHW7_GLYSO (CASP-like protein OS=Glycine soja GN=glysoja_032175 PE=3 SV=1) HSP 1 Score: 231.5 bits (589), Expect = 1.0e-57 Identity = 115/177 (64.97%), Postives = 140/177 (79.10%), Query Frame = 1
BLAST of CmoCh04G006840 vs. TrEMBL
Match: I1MZJ4_SOYBN (CASP-like protein OS=Glycine max GN=GLYMA_18G045300 PE=3 SV=1) HSP 1 Score: 230.7 bits (587), Expect = 1.7e-57 Identity = 115/177 (64.97%), Postives = 139/177 (78.53%), Query Frame = 1
BLAST of CmoCh04G006840 vs. TAIR10
Match: AT1G17200.1 (AT1G17200.1 Uncharacterised protein family (UPF0497)) HSP 1 Score: 218.8 bits (556), Expect = 3.5e-57 Identity = 116/200 (58.00%), Postives = 153/200 (76.50%), Query Frame = 1
BLAST of CmoCh04G006840 vs. TAIR10
Match: AT3G14380.1 (AT3G14380.1 Uncharacterised protein family (UPF0497)) HSP 1 Score: 160.2 bits (404), Expect = 1.5e-39 Identity = 81/156 (51.92%), Postives = 114/156 (73.08%), Query Frame = 1
BLAST of CmoCh04G006840 vs. TAIR10
Match: AT5G54980.1 (AT5G54980.1 Uncharacterised protein family (UPF0497)) HSP 1 Score: 97.4 bits (241), Expect = 1.2e-20 Identity = 59/187 (31.55%), Postives = 107/187 (57.22%), Query Frame = 1
BLAST of CmoCh04G006840 vs. TAIR10
Match: AT5G06200.1 (AT5G06200.1 Uncharacterised protein family (UPF0497)) HSP 1 Score: 74.7 bits (182), Expect = 8.1e-14 Identity = 52/160 (32.50%), Postives = 78/160 (48.75%), Query Frame = 1
BLAST of CmoCh04G006840 vs. TAIR10
Match: AT3G11550.1 (AT3G11550.1 Uncharacterised protein family (UPF0497)) HSP 1 Score: 68.6 bits (166), Expect = 5.8e-12 Identity = 47/160 (29.38%), Postives = 79/160 (49.38%), Query Frame = 1
BLAST of CmoCh04G006840 vs. NCBI nr
Match: gi|659101839|ref|XP_008451819.1| (PREDICTED: CASP-like protein F16 [Cucumis melo]) HSP 1 Score: 301.6 bits (771), Expect = 1.1e-78 Identity = 159/203 (78.33%), Postives = 179/203 (88.18%), Query Frame = 1
BLAST of CmoCh04G006840 vs. NCBI nr
Match: gi|449460050|ref|XP_004147759.1| (PREDICTED: CASP-like protein F16 [Cucumis sativus]) HSP 1 Score: 299.7 bits (766), Expect = 4.4e-78 Identity = 159/203 (78.33%), Postives = 177/203 (87.19%), Query Frame = 1
BLAST of CmoCh04G006840 vs. NCBI nr
Match: gi|567899472|ref|XP_006442224.1| (hypothetical protein CICLE_v10022266mg [Citrus clementina]) HSP 1 Score: 235.3 bits (599), Expect = 1.0e-58 Identity = 125/207 (60.39%), Postives = 155/207 (74.88%), Query Frame = 1
BLAST of CmoCh04G006840 vs. NCBI nr
Match: gi|734338385|gb|KHN08760.1| (CASP-like protein 10 [Glycine soja]) HSP 1 Score: 231.5 bits (589), Expect = 1.5e-57 Identity = 115/177 (64.97%), Postives = 140/177 (79.10%), Query Frame = 1
BLAST of CmoCh04G006840 vs. NCBI nr
Match: gi|356569822|ref|XP_003553094.1| (PREDICTED: CASP-like protein 2A2 [Glycine max]) HSP 1 Score: 230.7 bits (587), Expect = 2.5e-57 Identity = 115/177 (64.97%), Postives = 139/177 (78.53%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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