CmoCh04G005400 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G005400
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Protein-protein interaction regulator
Location	Cmo_Chr04 : 2681909 .. 2682565 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCAAGATAACTTTCGCGCATTGATGGAGGAGATAAATGAAGAAGCCAAAGGAAAGGATGCAAGGAAGTCTCAAGAAGAAACATCTGGGAGTGATGCACAGTCTACCAGATCGATGGGAAACAAAATCATTTGCGGGACAGCGGATCGTTTAGCTTGGATGGAAATAAAAGAGCATCTAGGATGGTAATTTTCATGTACTTCTATATTTTAATCATATCCAGGATGGTTTGGTCTCAAAGTTCTGTTTTATAATTTCTTTTGTGGTGGATGGTTGCTTGTTGATGGTGTCATTGGGAATATAAACTGGATATTTAGGTGTATGTTGTCAACATAAATGTTTGTCCATCCACTTATTGCATTACAAAAATGCATTTCAGGCTTTTATGGATTGGAAGCCTCCAGAAGAGAGGAGTTGTATGAGTATCAGGAACAGATAGGAGAACAGTATGTTGCAAATGTTGAGCAGGTGAAGGAGTTGGGGAGGTGGCAAAATGCAAGGAGGGCAAGAAAAGGACATAGTGATGTATGGAAATTGCAGGAAACCATGGACAGAATTGGAACATCCCAAGGTGGTAGCAACGAAAAAGACGAGGATAGTGTGGAAGATATTAAAGTTGAGGAGGATGAAATAATAGACGATGTACCCGCGTAG

mRNA sequence

ATGAAGCAAGATAACTTTCGCGCATTGATGGAGGAGATAAATGAAGAAGCCAAAGGAAAGGATGCAAGGAAGTCTCAAGAAGAAACATCTGGGAGTGATGCACAGTCTACCAGATCGATGGGAAACAAAATCATTTGCGGGACAGCGGATCGCTTTTATGGATTGGAAGCCTCCAGAAGAGAGGAGTTGTATGAGTATCAGGAACAGATAGGAGAACAGTATGTTGCAAATGTTGAGCAGGTGAAGGAGTTGGGGAGGTGGCAAAATGCAAGGAGGGCAAGAAAAGGACATAGTGATGTATGGAAATTGCAGGAAACCATGGACAGAATTGGAACATCCCAAGGTGGTAGCAACGAAAAAGACGAGGATAGTGTGGAAGATATTAAAGTTGAGGAGGATGAAATAATAGACGATGTACCCGCGTAG

Coding sequence (CDS)

ATGAAGCAAGATAACTTTCGCGCATTGATGGAGGAGATAAATGAAGAAGCCAAAGGAAAGGATGCAAGGAAGTCTCAAGAAGAAACATCTGGGAGTGATGCACAGTCTACCAGATCGATGGGAAACAAAATCATTTGCGGGACAGCGGATCGCTTTTATGGATTGGAAGCCTCCAGAAGAGAGGAGTTGTATGAGTATCAGGAACAGATAGGAGAACAGTATGTTGCAAATGTTGAGCAGGTGAAGGAGTTGGGGAGGTGGCAAAATGCAAGGAGGGCAAGAAAAGGACATAGTGATGTATGGAAATTGCAGGAAACCATGGACAGAATTGGAACATCCCAAGGTGGTAGCAACGAAAAAGACGAGGATAGTGTGGAAGATATTAAAGTTGAGGAGGATGAAATAATAGACGATGTACCCGCGTAG

Homology

[Close]

BLAST of CmoCh04G005400 vs. TrEMBL
Match: A0A0A0L734_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G209450 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 8.4e-18
Identity = 61/102 (59.80%), Postives = 73/102 (71.57%), Query Frame = 1


Query: 50  DRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMDR 109
           + F   +ASRREEL EYQ+QIGEQY+ANVE  K+L RWQNARRARKG +DV  LQETMD+
Sbjct: 295 EAFMEWKASRREELSEYQKQIGEQYIANVE--KDLERWQNARRARKGSNDVSNLQETMDK 354

Query: 110 -IGTSQ-----------GGSNEKDEDSVEDIKVEEDEIIDDV 140
            + T +           GGSN +DED VEDI V ED++IDDV
Sbjct: 355 ELDTHRLEHGPKKRNIPGGSNNEDEDDVEDINVGEDDMIDDV 394

[Close]

BLAST of CmoCh04G005400 vs. TrEMBL
Match: V4SXJ3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001338mg PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-14
Identity = 54/100 (54.00%), Postives = 70/100 (70.00%), Query Frame = 1


Query: 52  FYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMDR-I 111
           F   +A+ RE+L EYQ+QI EQYVANVE  KE+ RWQNAR+ARK ++D+  LQETMD+ +
Sbjct: 280 FLEWKAATREKLSEYQKQIEEQYVANVE--KEMERWQNARKARKANNDMLNLQETMDKEL 339

Query: 112 GTSQ-----------GGSNEKDEDSVEDIKVEEDEIIDDV 140
            T +           GGSN +DED VEDI V ED+++DDV
Sbjct: 340 DTHRLEHGPKPRKIPGGSNNEDEDDVEDINVGEDDMMDDV 377

[Close]

BLAST of CmoCh04G005400 vs. TrEMBL
Match: A0A067EQN5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014812mg PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-14
Identity = 54/100 (54.00%), Postives = 70/100 (70.00%), Query Frame = 1


Query: 52  FYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMDR-I 111
           F   +A+ RE+L EYQ+QI EQYVANVE  KE+ RWQNAR+ARK ++D+  LQETMD+ +
Sbjct: 290 FLEWKAATREKLSEYQKQIEEQYVANVE--KEMERWQNARKARKANNDMLNLQETMDKEL 349

Query: 112 GTSQ-----------GGSNEKDEDSVEDIKVEEDEIIDDV 140
            T +           GGSN +DED VEDI V ED+++DDV
Sbjct: 350 DTHRLEHGPKPRKIPGGSNNEDEDDVEDINVGEDDMMDDV 387

[Close]

BLAST of CmoCh04G005400 vs. TrEMBL
Match: A0A103Y3D0_CYNCS (Pinin/SDK/MemA protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_019965 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.3e-14
Identity = 61/149 (40.94%), Postives = 91/149 (61.07%), Query Frame = 1


Query: 9   LMEEINEEAKGKDARKSQEETSGS------DAQSTRSMGNKIICGTADRFYGLEASRREE 68
           ++E+  E+    + +  +EE+ G       + +  + +G + + G  + F   +A+RREE
Sbjct: 326 VLEQRKEQGLNFEGKCWKEESRGKIGTCVDENRRKKVVGRRKVVGE-EAFQEWKAARREE 385

Query: 69  LYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMDR-IGTSQ------- 128
           L +YQ+QIGEQYVANVE  KEL RWQN R+AR G++D   LQETMD+ + T +       
Sbjct: 386 LSKYQQQIGEQYVANVE--KELERWQNGRKARNGNNDTLNLQETMDKELETHRLEHGPKT 445

Query: 129 ----GGSNEKDEDSVEDIKVEEDEIIDDV 140
               GG N +DED VED+ V ED+++DDV
Sbjct: 446 RKIPGGDNNEDEDDVEDMNVGEDDMMDDV 471

[Close]

BLAST of CmoCh04G005400 vs. TrEMBL
Match: M5XEB1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006292mg PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.4e-14
Identity = 54/101 (53.47%), Postives = 68/101 (67.33%), Query Frame = 1


Query: 52  FYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMDR-I 111
           F   +A+RREEL EYQ+QIGEQ +AN E  KEL RWQNAR+ RK ++DV  LQETMD+ +
Sbjct: 292 FLEWKAARREELTEYQKQIGEQCIANAE--KELERWQNARKPRKANNDVMNLQETMDKEL 351

Query: 112 GTSQ------------GGSNEKDEDSVEDIKVEEDEIIDDV 140
            T +            G +N++DED VEDI V ED +IDDV
Sbjct: 352 DTHRLEHGPKKRKIPDGSNNDEDEDDVEDINVAEDYMIDDV 390

[Close]

BLAST of CmoCh04G005400 vs. TAIR10
Match: AT1G15200.3 (AT1G15200.3 protein-protein interaction regulator family protein)

HSP 1 Score: 62.8 bits (151), Expect = 2.0e-10
Identity = 51/127 (40.16%), Postives = 72/127 (56.69%), Query Frame = 1


Query: 26  QEETSGSDAQSTRSMGNKIICGTADRFYGLEASRREELYEYQEQIGEQYVANVEQVKELG 85
           +E+TS  + Q  R+            F   +A+RR+E+ EYQ++I EQ + NVE  KEL 
Sbjct: 324 EEDTSEVEQQKERT------------FLEWKAARRQEVSEYQKEIEEQCLGNVE--KELE 383

Query: 86  RWQNARRARKGHSDVWKLQETMDR-IGTSQ-------------GGSNEKDEDSVEDIKVE 139
           RWQNAR+ARK +++   LQETMD+ + T +             G  +E +ED VEDI   
Sbjct: 384 RWQNARKARKANNEGMNLQETMDKELETHRMEHGPKKRKIPGGGVGDEDEEDEVEDINGG 436

[Close]

BLAST of CmoCh04G005400 vs. NCBI nr
Match: gi|659112199|ref|XP_008456110.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496147 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 7.1e-18
Identity = 61/102 (59.80%), Postives = 71/102 (69.61%), Query Frame = 1


Query: 50  DRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMD- 109
           + F   +ASRREEL EYQ+QIGEQY+ANVE  K+L RWQNARRARKG +DV  LQETMD 
Sbjct: 344 EAFMEWKASRREELSEYQKQIGEQYIANVE--KDLERWQNARRARKGSNDVSNLQETMDK 403

Query: 110 -----------RIGTSQGGSNEKDEDSVEDIKVEEDEIIDDV 140
                      +  T  GGSN +DED VEDI V ED++IDDV
Sbjct: 404 ELDTHRLEHGPKKRTIPGGSNNEDEDDVEDINVGEDDMIDDV 443

[Close]

BLAST of CmoCh04G005400 vs. NCBI nr
Match: gi|449445862|ref|XP_004140691.1| (PREDICTED: pinin [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 61/102 (59.80%), Postives = 73/102 (71.57%), Query Frame = 1


Query: 50  DRFYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMDR 109
           + F   +ASRREEL EYQ+QIGEQY+ANVE  K+L RWQNARRARKG +DV  LQETMD+
Sbjct: 295 EAFMEWKASRREELSEYQKQIGEQYIANVE--KDLERWQNARRARKGSNDVSNLQETMDK 354

Query: 110 -IGTSQ-----------GGSNEKDEDSVEDIKVEEDEIIDDV 140
            + T +           GGSN +DED VEDI V ED++IDDV
Sbjct: 355 ELDTHRLEHGPKKRNIPGGSNNEDEDDVEDINVGEDDMIDDV 394

[Close]

BLAST of CmoCh04G005400 vs. NCBI nr
Match: gi|658043953|ref|XP_008357618.1| (PREDICTED: pinin-like [Malus domestica])

HSP 1 Score: 92.0 bits (227), Expect = 8.7e-16
Identity = 57/100 (57.00%), Postives = 67/100 (67.00%), Query Frame = 1


Query: 52  FYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMD--- 111
           F   +A+RREEL EYQ+QIGEQY+ANVE  KEL RWQNAR+ RK ++DV  LQETMD   
Sbjct: 295 FLAWKAARREELTEYQKQIGEQYIANVE--KELERWQNARKPRKANNDVMNLQETMDKEL 354

Query: 112 ---------RIGTSQGGSNEKDEDSVEDIKVEEDEIIDDV 140
                    +  T   GSN +DED VEDI V ED +IDDV
Sbjct: 355 DTHRLEHGPKKRTIPDGSNNEDEDDVEDINVAEDYMIDDV 392

[Close]

BLAST of CmoCh04G005400 vs. NCBI nr
Match: gi|658058984|ref|XP_008365304.1| (PREDICTED: trichohyalin-like [Malus domestica])

HSP 1 Score: 92.0 bits (227), Expect = 8.7e-16
Identity = 57/100 (57.00%), Postives = 67/100 (67.00%), Query Frame = 1


Query: 52  FYGLEASRREELYEYQEQIGEQYVANVEQVKELGRWQNARRARKGHSDVWKLQETMD--- 111
           F   +A+RREEL EYQ+QIGEQY+ANVE  KEL RWQNAR+ RK ++DV  LQETMD   
Sbjct: 143 FLAWKAARREELTEYQKQIGEQYIANVE--KELERWQNARKPRKANNDVMNLQETMDKEL 202

Query: 112 ---------RIGTSQGGSNEKDEDSVEDIKVEEDEIIDDV 140
                    +  T   GSN +DED VEDI V ED +IDDV
Sbjct: 203 DTHRLEHGPKKRTIPDGSNNEDEDDVEDINVAEDYMIDDV 240

[Close]

BLAST of CmoCh04G005400 vs. NCBI nr
Match: gi|658008151|ref|XP_008339264.1| (PREDICTED: pinin [Malus domestica])

HSP 1 Score: 89.7 bits (221), Expect = 4.3e-15
Identity = 65/129 (50.39%), Postives = 76/129 (58.91%), Query Frame = 1


Query: 23  RKSQEETSGSDAQSTRSMGNKIICGTADRFYGLEASRREELYEYQEQIGEQYVANVEQVK 82
           +KS EE    DA  T     K        F   +A+RREEL EYQ+QIGEQY ANVE  K
Sbjct: 275 KKSLEE----DAALTEQQKEK-------EFLAWKAARREELTEYQKQIGEQYTANVE--K 334

Query: 83  ELGRWQNARRARKGHSDVWKLQETMD------------RIGTSQGGSNEKDEDSVEDIKV 140
           EL RWQNAR  RK ++DV  LQETMD            +  T   GSN++DED VEDI V
Sbjct: 335 ELERWQNARTPRKANNDVMNLQETMDKELDTHRLEHGPKKRTIPDGSNDEDEDDVEDINV 390

The following BLAST results are available for this feature:

BLAST of CmoCh04G005400 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G005400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L734_CUCSA	8.4e-18	59.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G209450 PE=4 SV=1	[more]
V4SXJ3_9ROSI	3.3e-14	54.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001338mg PE=4 SV=1	[more]
A0A067EQN5_CITSI	3.3e-14	54.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014812mg PE=4 SV=1	[more]
A0A103Y3D0_CYNCS	4.3e-14	40.94	Pinin/SDK/MemA protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_01...	[more]
M5XEB1_PRUPE	7.4e-14	53.47	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006292mg PE=4 SV=1	[more]

BLAST of CmoCh04G005400 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G15200.3	2.0e-10	40.16	protein-protein interaction regulator family protein	[more]

BLAST of CmoCh04G005400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112199\|ref\|XP_008456110.1\|	7.1e-18	59.80	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496147 [Cucumis me...	[more]
gi\|449445862\|ref\|XP_004140691.1\|	1.2e-17	59.80	PREDICTED: pinin [Cucumis sativus]	[more]
gi\|658043953\|ref\|XP_008357618.1\|	8.7e-16	57.00	PREDICTED: pinin-like [Malus domestica]	[more]
gi\|658058984\|ref\|XP_008365304.1\|	8.7e-16	57.00	PREDICTED: trichohyalin-like [Malus domestica]	[more]
gi\|658008151\|ref\|XP_008339264.1\|	4.3e-15	50.39	PREDICTED: pinin [Malus domestica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G005400.1	CmoCh04G005400.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G005400	Cucsa.244230	Cucumber (Gy14) v1	cgycmoB0687
CmoCh04G005400	CmaCh16G003640	Cucurbita maxima (Rimu)	cmacmoB338
CmoCh04G005400	Cla013057	Watermelon (97103) v1	cmowmB699
CmoCh04G005400	Csa3G209450	Cucumber (Chinese Long) v2	cmocuB687
CmoCh04G005400	MELO3C019500	Melon (DHL92) v3.5.1	cmomeB683
CmoCh04G005400	ClCG05G009900	Watermelon (Charleston Gray)	cmowcgB660
CmoCh04G005400	CSPI03G18640	Wild cucumber (PI 183967)	cmocpiB698
CmoCh04G005400	Lsi05G002030	Bottle gourd (USVL1VR-Ls)	cmolsiB683
CmoCh04G005400	Cp4.1LG14g04120	Cucurbita pepo (Zucchini)	cmocpeB668
CmoCh04G005400	MELO3C019500.2	Melon (DHL92) v3.6.1	cmomedB774
CmoCh04G005400	CsaV3_3G018690	Cucumber (Chinese Long) v3	cmocucB0814
CmoCh04G005400	Cla97C05G092310	Watermelon (97103) v2	cmowmbB735
CmoCh04G005400	Bhi01G001246	Wax gourd	cmowgoB0849
CmoCh04G005400	CsGy3G018480	Cucumber (Gy14) v2	cgybcmoB386
CmoCh04G005400	Carg11292	Silver-seed gourd	carcmoB0899

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G005400	CmoCh16G003890	Cucurbita moschata (Rifu)	cmocmoB286

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G005400	Silver-seed gourd	carcmoB0514
CmoCh04G005400	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G005400	Melon (DHL92) v3.5.1	cmomeB682
CmoCh04G005400	Watermelon (Charleston Gray)	cmowcgB658
CmoCh04G005400	Watermelon (97103) v1	cmowmB697
CmoCh04G005400	Cucurbita pepo (Zucchini)	cmocpeB673