CmoCh04G002340 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G002340
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionDomain of Uncharacterized protein function, putative
LocationCmo_Chr04 : 1173123 .. 1174255 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTCAATGCGGAAAGGAGAAGAGAGACATTGGCGTCAAGTGAAGGGCGGAGCAGAGGAACGAGTCTCTGTCCTGAACAAGCCGAAACCAAAACCATGACAGAGATGAAAACAGAGCATGCAGAAACCATACCTGTAATATACTACCTCACACGCAATGGCCAGCTCGAGCATCCTCATTTGCTGGAGGTTCCTCTTTCTTCTTCCCGCGGACTCTTTCTCAGAGGTAAACTCAATCTTCTCTTTATTTCGTCGAACGATTTCTTTGTTTGTCAATTTTCATCTCAGTCTGATTTGCTTCTCAGATGTGATCAAAAGACTCGATATATTTCGAGGAGAATACTTTTCCAGAATGTATTCGTGGTCTTCGAAGCGGTAAGTACGGATGATTTTCTGTTTTTTTTGTGTGAAACGGTTGTTGAGAATACGATTTTCGTGTATTTTCCTTCTTGTTCTTCTTTTTTTTTTTTTTTTTTCCCAATCGATTAAACACAAATTCGCTTCATATATTACGATCAATCGAGCAATTACTTGCGATTTCAGGCGGTACAAAAGCGGATACGTATGGCAAGACCTATCAGACGACGATCTGATACATCCATCTCAAGGTCGAGAGTACATTCTCAAAGGATCGGAAGTGCGCTTGCTAGAGGCGTCTTCGAGTTTCCGATCTTGCGAATCATCATCGTCGTTTTCGGAGTCGAAATTTTCATCAGAGACGAACAATTCGAGCACGGATTCGAATTTTGCCGTCGCGGTGAAGAGAAACAACCAGTCTTGGAATTCGCTGGAAGATCTTTGCAGAAACGTAGTGTACAAGGCGAAAATTTCCGGCGAAGGCGGCACGAACGCGGCGACGCAGACCGGCGAGAGGCGGCGTAAATGCACGGACGGCGGAGAGGAAGTTTCTAACTCTGGAGTTGCAAGAACGGAGAGCTTGAGGTCTGTGGATTGTGAAGGAGCGGCGGATTTGAGGGATCAGACGGCTGGGAAGAGCAATAGGTGGAAGACATCAACGGTTCTGATGCAGTTGATCAAGTGTAACTTTTAAAATTGCAATATATTTTCTTTAAACAAAAATTCCCCTCATGTTCTTAATAATTATAATAATAAAAATAAAAAGACCACAT

mRNA sequence

ATGGCGGTCAATGCGGAAAGGAGAAGAGAGACATTGGCGTCAAGTGAAGGGCGGAGCAGAGGAACGAGTCTCTGTCCTGAACAAGCCGAAACCAAAACCATGACAGAGATGAAAACAGAGCATGCAGAAACCATACCTGTAATATACTACCTCACACGCAATGGCCAGCTCGAGCATCCTCATTTGCTGGAGGTTCCTCTTTCTTCTTCCCGCGGACTCTTTCTCAGAGGTAAACTCAATCTTCTCTTTATTTCGTCGAACGATTTCTTTGTTTGTCAATTTTCATCTCAGTCTGATTTGCTTCTCAGATGTGATCAAAAGACTCGATATATTTCGAGGAGAATACTTTTCCAGAATGTATTCGTGGTCTTCGAAGCGGTAAGTACGGATGATTTTCTGTTTTTTTTGTGTGAAACGGTTGTTGAGAATACGATTTTCGTGCGGTACAAAAGCGGATACGTATGGCAAGACCTATCAGACGACGATCTGATACATCCATCTCAAGGTCGAGAGTACATTCTCAAAGGATCGGAAGTGCGCTTGCTAGAGGCGTCTTCGAGTTTCCGATCTTGCGAATCATCATCGTCGTTTTCGGAGTCGAAATTTTCATCAGAGACGAACAATTCGAGCACGGATTCGAATTTTGCCGTCGCGGTGAAGAGAAACAACCAGTCTTGGAATTCGCTGGAAGATCTTTGCAGAAACGTAGTGTACAAGGCGAAAATTTCCGGCGAAGGCGGCACGAACGCGGCGACGCAGACCGGCGAGAGGCGGCGTAAATGCACGGACGGCGGAGAGGAAGTTTCTAACTCTGGAGTTGCAAGAACGGAGAGCTTGAGGTCTGTGGATTGTGAAGGAGCGGCGGATTTGAGGGATCAGACGGCTGGGAAGAGCAATAGGTGGAAGACATCAACGGTTCTGATGCAGTTGATCAAGTGTAACTTTTAAAATTGCAATATATTTTCTTTAAACAAAAATTCCCCTCATGTTCTTAATAATTATAATAATAAAAATAAAAAGACCACAT

Coding sequence (CDS)

ATGGCGGTCAATGCGGAAAGGAGAAGAGAGACATTGGCGTCAAGTGAAGGGCGGAGCAGAGGAACGAGTCTCTGTCCTGAACAAGCCGAAACCAAAACCATGACAGAGATGAAAACAGAGCATGCAGAAACCATACCTGTAATATACTACCTCACACGCAATGGCCAGCTCGAGCATCCTCATTTGCTGGAGGTTCCTCTTTCTTCTTCCCGCGGACTCTTTCTCAGAGGTAAACTCAATCTTCTCTTTATTTCGTCGAACGATTTCTTTGTTTGTCAATTTTCATCTCAGTCTGATTTGCTTCTCAGATGTGATCAAAAGACTCGATATATTTCGAGGAGAATACTTTTCCAGAATGTATTCGTGGTCTTCGAAGCGGTAAGTACGGATGATTTTCTGTTTTTTTTGTGTGAAACGGTTGTTGAGAATACGATTTTCGTGCGGTACAAAAGCGGATACGTATGGCAAGACCTATCAGACGACGATCTGATACATCCATCTCAAGGTCGAGAGTACATTCTCAAAGGATCGGAAGTGCGCTTGCTAGAGGCGTCTTCGAGTTTCCGATCTTGCGAATCATCATCGTCGTTTTCGGAGTCGAAATTTTCATCAGAGACGAACAATTCGAGCACGGATTCGAATTTTGCCGTCGCGGTGAAGAGAAACAACCAGTCTTGGAATTCGCTGGAAGATCTTTGCAGAAACGTAGTGTACAAGGCGAAAATTTCCGGCGAAGGCGGCACGAACGCGGCGACGCAGACCGGCGAGAGGCGGCGTAAATGCACGGACGGCGGAGAGGAAGTTTCTAACTCTGGAGTTGCAAGAACGGAGAGCTTGAGGTCTGTGGATTGTGAAGGAGCGGCGGATTTGAGGGATCAGACGGCTGGGAAGAGCAATAGGTGGAAGACATCAACGGTTCTGATGCAGTTGATCAAGTGTAACTTTTAA
BLAST of CmoCh04G002340 vs. TrEMBL
Match: A0A0A0KLM4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G180890 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.1e-65
Identity = 132/174 (75.86%), Postives = 150/174 (86.21%), Query Frame = 1

Query: 148 RYKSGYVWQDLSDDDLIHPSQGREYILKGSEVRLLEASSSFRSCESSSSFSESKFSSETN 207
           +YK+GYVWQDLSDDDLIHPSQGREYILKGSEV+LLE SSSFRSCE+SSSFS+SKFSSETN
Sbjct: 103 QYKNGYVWQDLSDDDLIHPSQGREYILKGSEVQLLEGSSSFRSCETSSSFSDSKFSSETN 162

Query: 208 NSSTDSNFAVAVKRNNQSWNSLEDLCRNVVYKAKISGEGGTNAATQTGERRRKCTD---- 267
           NSSTDS   V V ++NQSWNS+ED+CRNVVYKA+ISGEGG NA TQTGERRR+ TD    
Sbjct: 163 NSSTDSKVGVGVNKSNQSWNSVEDICRNVVYKARISGEGGMNAGTQTGERRRRWTDSVAA 222

Query: 268 ---GGEEVSNSGVARTESLRSVDCEGAADLRDQTAGKSNRWKTSTVLMQLIKCN 315
              GGE VS SG+ +TE ++SVDC+GA DLRD+T  KSNRWK STVLMQL+KCN
Sbjct: 223 EECGGEGVSKSGIGKTERMKSVDCDGAGDLRDRTGRKSNRWKASTVLMQLMKCN 276

BLAST of CmoCh04G002340 vs. TrEMBL
Match: B9HM51_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s05080g PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 7.1e-25
Identity = 119/340 (35.00%), Postives = 166/340 (48.82%), Query Frame = 1

Query: 2   AVNAERRRETLASSEGRSRGTSLCPEQAETKTMTEMKTEHAETIPVIYYLTRNGQLEHPH 61
           A N+  RRE   +++ R R TS  P++ +   + + K+E    + V+YYLTRNGQ EHPH
Sbjct: 3   ATNSTDRRELSMANKYRDRETS--PDRTKMTILPKSKSELK--VAVVYYLTRNGQFEHPH 62

Query: 62  LLEVPLSSSRGLFLRGKLNLLFISSNDFFVCQFSSQSDLLLRCDQKTRYISRRILFQNVF 121
            +EVPL                           SS   L L+ D   R     +  Q + 
Sbjct: 63  FMEVPL---------------------------SSPQGLQLKGDVTDRL--NHLRGQGMA 122

Query: 122 VVFEAVSTDDFLFFLCETVVENTIFVRYKSGYVWQDLSDDDLIHPSQGREYILKGSEVRL 181
            ++   S                   RYK+G+VWQDLS+ D IHP  G EYILKGS   L
Sbjct: 123 RMYSWSSKR-----------------RYKNGFVWQDLSETDSIHPCGGHEYILKGS--LL 182

Query: 182 LEASSSFRSCESSSSFSESKFSSETNNSSTDSNFAVAVKRNNQSWNSLEDLCRNVVYKAK 241
           LE S SFR  +++SS +   FS   ++SS DSN + A++R N+SW + +DL    VYKAK
Sbjct: 183 LETSLSFR-YDTTSSRTSKVFSDIISSSSEDSN-SPAIRRKNRSWTTFDDLEEYKVYKAK 242

Query: 242 ----ISGEGGTNAATQTGERRRKCTDGGEEVSNSGVART-------------------ES 301
               I+GEG  N +TQT + RR   DG  E+ + G++                     ES
Sbjct: 243 ITGEIAGEGTYNVSTQTDDNRRVKIDGTREIGHRGLSTMLGSKEETSQLSLKSSSKAFES 288

Query: 302 L-RSVDCEG-AADLRDQTAGK---SNRWKTSTVLMQLIKC 314
           L RSV+  G +A ++ +  G    S R K S VLM+L+ C
Sbjct: 303 LERSVEENGSSATIKYEKVGNDCPSGRMKPSVVLMKLVGC 288

BLAST of CmoCh04G002340 vs. TrEMBL
Match: A0A061FU34_THECC (Domain of Uncharacterized protein function, putative OS=Theobroma cacao GN=TCM_042839 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-20
Identity = 81/182 (44.51%), Postives = 106/182 (58.24%), Query Frame = 1

Query: 149 YKSGYVWQDLSDDDLIHPSQGREYILKGSEVRLLEASSSFRSCES-SSSFSESKFSSETN 208
           YK+GYVWQDLS +D I+PS G EYILKGS   LL+ S SFRS ++ SS+ S SK SSET 
Sbjct: 98  YKNGYVWQDLSKNDFIYPSHGHEYILKGS--LLLQTSLSFRSYKTVSSTSSISKNSSETY 157

Query: 209 NSSTDSNFAVAVKRNNQSWNSLEDLCRNVVYKAKISGE---GGTNAATQTGERRRKCTDG 268
           +S  DSNF   ++R + SW+  ++L  + +Y+A+ S E    G N +TQT E  R+   G
Sbjct: 158 SSGEDSNFPAKIRRKHHSWSEFKELDEHKIYEARTSREFSSKGNNVSTQTDENARQRRVG 217

Query: 269 GEEV------SNSGVARTESLRSVDCEG----AADLRDQTAGK---SNRWKTSTVLMQLI 314
           GEE       +     R  S  S +       +AD+RDQ+      S R K S VLMQLI
Sbjct: 218 GEEAEEHQRENGQQTPRPSSYSSSEVPECLNISADIRDQSVENDRPSGRIKASAVLMQLI 277

BLAST of CmoCh04G002340 vs. TrEMBL
Match: V7BA03_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G011100g PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.0e-20
Identity = 80/181 (44.20%), Postives = 108/181 (59.67%), Query Frame = 1

Query: 149 YKSGYVWQDLSDDDLIHPSQGREYILKGSEVRLLEASSSFRSCESSSSFSESKFSSETNN 208
           YK+G+VWQDLS++DLI+PS G EY+LKG++  ++EAS SFRSCE+ S+ S SK S+E NN
Sbjct: 84  YKNGFVWQDLSENDLIYPSSGHEYVLKGTQ--MIEASLSFRSCETIST-SSSKSSTEANN 143

Query: 209 SSTDSNFAVAVKRNNQSWNSLEDLCRNVVYKAKISGE---GGTNAATQTGERRR------ 268
           SS D++    +K  +QS NS    C    YKAK   E    GTNA+TQT E+RR      
Sbjct: 144 SSMDADSPATIKGRSQSLNS----CDYKFYKAKTCEEFAGKGTNASTQTEEKRRERIKRE 203

Query: 269 ---KCTDGGEEVSNSGVARTESLR-SVDCEGAADLRDQTAGK---SNRWKTSTVLMQLIK 314
              +C       S    +   +L  S++  G+AD+R+Q       S R K S VLMQ I+
Sbjct: 204 KVEECEGNEGSSSRFSSSSFGALEGSLEGYGSADIRNQRVENERPSGRIKASEVLMQFIR 257

BLAST of CmoCh04G002340 vs. TrEMBL
Match: A0A0B0P7T7_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_07328 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-18
Identity = 80/173 (46.24%), Postives = 106/173 (61.27%), Query Frame = 1

Query: 149 YKSGYVWQDLSDDDLIHPSQGREYILKGSEVRLLEASSSFRSCES-SSSFSESKFSSETN 208
           YK+G+VWQDLS++D I+P  GREYILKGS   LLE+S SFRS E+ SS+ S SK SSET 
Sbjct: 98  YKNGFVWQDLSENDYIYPCNGREYILKGS--LLLESSLSFRSYETVSSTSSISKNSSETY 157

Query: 209 NSSTDSNFAVAVKRNNQSWNSLEDL-CRNVVYKAKIS---GEGGTNAATQTGERRRKCTD 268
           +SS DSN A   +R   SW+  ++L   + +YKAK S      G + +TQT E       
Sbjct: 158 SSSEDSNVAGKTRRKYHSWSEFKELDDEHKIYKAKTSRDFSSKGNSVSTQT-EHEMGSNQ 217

Query: 269 GGEEVSNSGVARTESLRSVDCEGAADLRDQTAGK---SNRWKTSTVLMQLIKC 314
             E+   S  + +E L+S++   AAD+RDQ+      S R K + VLMQLI C
Sbjct: 218 VQEDSRPSSNSNSEILKSMNI--AADIRDQSVENDRPSGRIKAAAVLMQLIAC 265

BLAST of CmoCh04G002340 vs. TAIR10
Match: AT5G59790.1 (AT5G59790.1 Domain of unknown function (DUF966))

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-17
Identity = 97/306 (31.70%), Postives = 132/306 (43.14%), Query Frame = 1

Query: 45  IPVIYYLTRNGQLEHPHLLEVPLSSSRGLFLRGKLNLLFISSNDFFVCQFSSQSDLLLRC 104
           +PV+YYL RNGQL+HPH +EV LSS  GL+L+  +N L               +DL  + 
Sbjct: 47  VPVVYYLCRNGQLDHPHFIEVTLSSHDGLYLKDVINRL---------------NDLRGKG 106

Query: 105 DQKTRYISRRILFQNVFVVFEAVSTDDFLFFLCETVVENTIFVRYKSGYVWQDLSDDDLI 164
                  S +  ++N F V+  +S DDF+F                              
Sbjct: 107 MASLYSWSSKRSYKNGF-VWHDLSEDDFIF------------------------------ 166

Query: 165 HPSQGREYILKGSEVRLLEASSSFRSCESSSSFSESKFSSETNNSSTDSNFAVAVKRNNQ 224
            P QG+EY+LKGSEV      S+ RS   +SSF + +  +   NS  D   AV  +R NQ
Sbjct: 167 -PVQGQEYVLKGSEVLDSCLISNPRSLLETSSFRDPRSLNPDKNSGDDIP-AVINRRRNQ 226

Query: 225 SWNSLEDLCRNVVYKAKISGEGGT-----NAATQTGERRRKCTDGGEEV----------- 284
           SW+S+ DL    VYKA  S    T     +A+TQT +RRR+     EE+           
Sbjct: 227 SWSSI-DLSEYKVYKATESSAESTQRLAADASTQTDDRRRRRRPAKEEIEEVKSPASYEN 286

Query: 285 --------------SNSGVARTESLRSVDC-------EGAADLRDQTAGKSNRWKTSTVL 314
                         S+S     E+L   D        E + D R   +  S R + S VL
Sbjct: 287 QSTELSRDEISPPPSDSSPETLENLIKADGRLILRPSESSTDHRTVESLSSGRMRASAVL 303

BLAST of CmoCh04G002340 vs. TAIR10
Match: AT3G46110.1 (AT3G46110.1 Domain of unknown function (DUF966))

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-16
Identity = 85/304 (27.96%), Postives = 128/304 (42.11%), Query Frame = 1

Query: 31  TKTMTEMKTEHAETIPVIYYLTRNGQLEHPHLLEVPLSSSRGLFLRGKLNLLFISSNDFF 90
           ++   + K      +PV+YYL+RNG+L+HPH +EVPLSS  GL+L+  +N L     +  
Sbjct: 6   SRATQDSKPSRERIVPVVYYLSRNGRLDHPHFIEVPLSSHNGLYLKDVINRLNDLRGNGM 65

Query: 91  VCQFSSQSDLLLRCDQKTRYISRRILFQNVFVVFEAVSTDDFLFFLCETVVENTIFVRYK 150
            C +S  S               +  ++N FV ++                         
Sbjct: 66  ACLYSWSS---------------KRTYKNGFVWYD------------------------- 125

Query: 151 SGYVWQDLSDDDLIHPSQGREYILKGSEVRLLEASSSFRSCESSSSFSESKFSSETNNSS 210
                  LSD+D I P  G+EY+LKGS++  L+                       NNS 
Sbjct: 126 -------LSDEDFIFPVHGQEYVLKGSQILDLD-----------------------NNS- 185

Query: 211 TDSNFAVAVKRNNQSWNSLEDLCRNVVYKA-KISGEG----GTNAATQTGERRRKCTD-- 270
              NF+    R NQSW+S++      VYKA +++ E       +A+TQT +RRR+ +   
Sbjct: 186 --GNFSAVTHRRNQSWSSVD---HYKVYKASELNAEATRKLSMDASTQTDDRRRRKSPVD 233

Query: 271 --------GGEEV-----SNSGVARTESLRSVDCEGAADLRDQTAGKS-NRWKTSTVLMQ 314
                     EE+     S+S     ESL   D        DQ   ++  + + S VLMQ
Sbjct: 246 EVNEVTELSREEITSPPQSDSSPETLESLMRADGRLILLQEDQELNRTVEKMRPSAVLMQ 233

BLAST of CmoCh04G002340 vs. TAIR10
Match: AT1G05577.1 (AT1G05577.1 Domain of unknown function (DUF966))

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-07
Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 1

Query: 148 RYKSGYVWQDLSDDDLIHPSQGREYILKGSEVRLLEASSSFRSCESSS 196
           RYK+GYVWQDL DDDLI P    EY+LKGSE+ L      + + E  +
Sbjct: 69  RYKNGYVWQDLLDDDLITPISDNEYVLKGSEILLSSPKEDYPNVEKKA 116

BLAST of CmoCh04G002340 vs. NCBI nr
Match: gi|659123394|ref|XP_008461641.1| (PREDICTED: uncharacterized protein LOC103500195 [Cucumis melo])

HSP 1 Score: 266.2 bits (679), Expect = 7.5e-68
Identity = 138/174 (79.31%), Postives = 154/174 (88.51%), Query Frame = 1

Query: 148 RYKSGYVWQDLSDDDLIHPSQGREYILKGSEVRLLEASSSFRSCESSSSFSESKFSSETN 207
           +YK+GYVWQDLSDDDLIHPSQGREYILKGSEV+LLEASSSFRSCE+SSSFSESKFSSETN
Sbjct: 103 QYKNGYVWQDLSDDDLIHPSQGREYILKGSEVQLLEASSSFRSCETSSSFSESKFSSETN 162

Query: 208 NSSTDSNFAVAVKRNNQSWNSLEDLCRNVVYKAKISGEGGTNAATQTGERRRKCTD---- 267
           NSSTDS  AVA  R+NQSWNS+ED+CRNVVYKA+ISGEGGTNAATQTGERRR+ TD    
Sbjct: 163 NSSTDSKVAVAGNRSNQSWNSVEDICRNVVYKARISGEGGTNAATQTGERRRRWTDSVAA 222

Query: 268 ---GGEEVSNSGVARTESLRSVDCEGAADLRDQTAGKSNRWKTSTVLMQLIKCN 315
              GGE VSNSGV R E ++SVDC+GAADLRD+T GK  RWK +TV+MQL+KCN
Sbjct: 223 EECGGEGVSNSGVGRRERMKSVDCDGAADLRDRTGGKCKRWKAATVVMQLMKCN 276

BLAST of CmoCh04G002340 vs. NCBI nr
Match: gi|449459970|ref|XP_004147719.1| (PREDICTED: uncharacterized protein LOC101206550 [Cucumis sativus])

HSP 1 Score: 258.5 bits (659), Expect = 1.6e-65
Identity = 132/174 (75.86%), Postives = 150/174 (86.21%), Query Frame = 1

Query: 148 RYKSGYVWQDLSDDDLIHPSQGREYILKGSEVRLLEASSSFRSCESSSSFSESKFSSETN 207
           +YK+GYVWQDLSDDDLIHPSQGREYILKGSEV+LLE SSSFRSCE+SSSFS+SKFSSETN
Sbjct: 103 QYKNGYVWQDLSDDDLIHPSQGREYILKGSEVQLLEGSSSFRSCETSSSFSDSKFSSETN 162

Query: 208 NSSTDSNFAVAVKRNNQSWNSLEDLCRNVVYKAKISGEGGTNAATQTGERRRKCTD---- 267
           NSSTDS   V V ++NQSWNS+ED+CRNVVYKA+ISGEGG NA TQTGERRR+ TD    
Sbjct: 163 NSSTDSKVGVGVNKSNQSWNSVEDICRNVVYKARISGEGGMNAGTQTGERRRRWTDSVAA 222

Query: 268 ---GGEEVSNSGVARTESLRSVDCEGAADLRDQTAGKSNRWKTSTVLMQLIKCN 315
              GGE VS SG+ +TE ++SVDC+GA DLRD+T  KSNRWK STVLMQL+KCN
Sbjct: 223 EECGGEGVSKSGIGKTERMKSVDCDGAGDLRDRTGRKSNRWKASTVLMQLMKCN 276

BLAST of CmoCh04G002340 vs. NCBI nr
Match: gi|224098290|ref|XP_002311147.1| (hypothetical protein POPTR_0008s05080g [Populus trichocarpa])

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24
Identity = 119/340 (35.00%), Postives = 166/340 (48.82%), Query Frame = 1

Query: 2   AVNAERRRETLASSEGRSRGTSLCPEQAETKTMTEMKTEHAETIPVIYYLTRNGQLEHPH 61
           A N+  RRE   +++ R R TS  P++ +   + + K+E    + V+YYLTRNGQ EHPH
Sbjct: 3   ATNSTDRRELSMANKYRDRETS--PDRTKMTILPKSKSELK--VAVVYYLTRNGQFEHPH 62

Query: 62  LLEVPLSSSRGLFLRGKLNLLFISSNDFFVCQFSSQSDLLLRCDQKTRYISRRILFQNVF 121
            +EVPL                           SS   L L+ D   R     +  Q + 
Sbjct: 63  FMEVPL---------------------------SSPQGLQLKGDVTDRL--NHLRGQGMA 122

Query: 122 VVFEAVSTDDFLFFLCETVVENTIFVRYKSGYVWQDLSDDDLIHPSQGREYILKGSEVRL 181
            ++   S                   RYK+G+VWQDLS+ D IHP  G EYILKGS   L
Sbjct: 123 RMYSWSSKR-----------------RYKNGFVWQDLSETDSIHPCGGHEYILKGS--LL 182

Query: 182 LEASSSFRSCESSSSFSESKFSSETNNSSTDSNFAVAVKRNNQSWNSLEDLCRNVVYKAK 241
           LE S SFR  +++SS +   FS   ++SS DSN + A++R N+SW + +DL    VYKAK
Sbjct: 183 LETSLSFR-YDTTSSRTSKVFSDIISSSSEDSN-SPAIRRKNRSWTTFDDLEEYKVYKAK 242

Query: 242 ----ISGEGGTNAATQTGERRRKCTDGGEEVSNSGVART-------------------ES 301
               I+GEG  N +TQT + RR   DG  E+ + G++                     ES
Sbjct: 243 ITGEIAGEGTYNVSTQTDDNRRVKIDGTREIGHRGLSTMLGSKEETSQLSLKSSSKAFES 288

Query: 302 L-RSVDCEG-AADLRDQTAGK---SNRWKTSTVLMQLIKC 314
           L RSV+  G +A ++ +  G    S R K S VLM+L+ C
Sbjct: 303 LERSVEENGSSATIKYEKVGNDCPSGRMKPSVVLMKLVGC 288

BLAST of CmoCh04G002340 vs. NCBI nr
Match: gi|823250341|ref|XP_012457759.1| (PREDICTED: protein UPSTREAM OF FLC-like isoform X1 [Gossypium raimondii])

HSP 1 Score: 114.0 bits (284), Expect = 4.8e-22
Identity = 107/287 (37.28%), Postives = 149/287 (51.92%), Query Frame = 1

Query: 38  KTEHAETIPVIYYLTRNGQLEHPHLLEVPLSSSRGLFLRGKLNLLFISSNDFFVCQFSSQ 97
           K  + + +PV+YYL+RNG LEHPH LEVPLSS +GLFL+  +N L     D    +FS  
Sbjct: 34  KPNNDQKVPVVYYLSRNGHLEHPHFLEVPLSSPQGLFLKDVINKLNTLRGDGMANKFSWS 93

Query: 98  SDLLLRCDQKTRYISRRILFQNVFVVFEAVSTDDFLFFLCETVVENTIFVRYKSGYVWQD 157
           S       ++  Y S    ++N F V++ +S +D+                         
Sbjct: 94  S-------KRFHYRS----YKNGF-VWQDLSENDY------------------------- 153

Query: 158 LSDDDLIHPSQGREYILKGSEVRLLEASSSFRSCES-SSSFSESKFSSETNNSSTDSNFA 217
                 I+P  GREYILKGS   LLE+S SFRS E+ SS+ S SK SS T +SS DSN A
Sbjct: 154 ------IYPCNGREYILKGS--LLLESSLSFRSYETVSSTSSISKNSSVTYSSSEDSNVA 213

Query: 218 VAVKRNNQSWNSLEDL-CRNVVYKAKIS---GEGGTNAATQTGERRRKCTDGGEEVSN-- 277
              +R + SW+  ++L   + +YKAK S      G + +TQT         G  +V +  
Sbjct: 214 GKTRRKHHSWSEFKELDDEHKIYKAKTSRDFSSKGNSVSTQTDHEM-----GNNQVQDSR 268

Query: 278 -SGVARTESLRSVDCEGAADLRDQTAGK---SNRWKTSTVLMQLIKC 314
            S  + +E L+S++   AAD+RDQ+      S R K + VLMQLI C
Sbjct: 274 PSSNSNSEILKSMNI--AADIRDQSVENDRPSGRIKAAAVLMQLIAC 268

BLAST of CmoCh04G002340 vs. NCBI nr
Match: gi|590563698|ref|XP_007009444.1| (Domain of Uncharacterized protein function, putative [Theobroma cacao])

HSP 1 Score: 109.0 bits (271), Expect = 1.5e-20
Identity = 81/182 (44.51%), Postives = 106/182 (58.24%), Query Frame = 1

Query: 149 YKSGYVWQDLSDDDLIHPSQGREYILKGSEVRLLEASSSFRSCES-SSSFSESKFSSETN 208
           YK+GYVWQDLS +D I+PS G EYILKGS   LL+ S SFRS ++ SS+ S SK SSET 
Sbjct: 98  YKNGYVWQDLSKNDFIYPSHGHEYILKGS--LLLQTSLSFRSYKTVSSTSSISKNSSETY 157

Query: 209 NSSTDSNFAVAVKRNNQSWNSLEDLCRNVVYKAKISGE---GGTNAATQTGERRRKCTDG 268
           +S  DSNF   ++R + SW+  ++L  + +Y+A+ S E    G N +TQT E  R+   G
Sbjct: 158 SSGEDSNFPAKIRRKHHSWSEFKELDEHKIYEARTSREFSSKGNNVSTQTDENARQRRVG 217

Query: 269 GEEV------SNSGVARTESLRSVDCEG----AADLRDQTAGK---SNRWKTSTVLMQLI 314
           GEE       +     R  S  S +       +AD+RDQ+      S R K S VLMQLI
Sbjct: 218 GEEAEEHQRENGQQTPRPSSYSSSEVPECLNISADIRDQSVENDRPSGRIKASAVLMQLI 277

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KLM4_CUCSA1.1e-6575.86Uncharacterized protein OS=Cucumis sativus GN=Csa_5G180890 PE=4 SV=1[more]
B9HM51_POPTR7.1e-2535.00Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s05080g PE=4 SV=1[more]
A0A061FU34_THECC1.1e-2044.51Domain of Uncharacterized protein function, putative OS=Theobroma cacao GN=TCM_0... [more]
V7BA03_PHAVU9.0e-2044.20Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G011100g PE=4 SV=1[more]
A0A0B0P7T7_GOSAR1.3e-1846.24Uncharacterized protein OS=Gossypium arboreum GN=F383_07328 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G59790.12.2e-1731.70 Domain of unknown function (DUF966)[more]
AT3G46110.11.9e-1627.96 Domain of unknown function (DUF966)[more]
AT1G05577.11.2e-0752.08 Domain of unknown function (DUF966)[more]
Match NameE-valueIdentityDescription
gi|659123394|ref|XP_008461641.1|7.5e-6879.31PREDICTED: uncharacterized protein LOC103500195 [Cucumis melo][more]
gi|449459970|ref|XP_004147719.1|1.6e-6575.86PREDICTED: uncharacterized protein LOC101206550 [Cucumis sativus][more]
gi|224098290|ref|XP_002311147.1|1.0e-2435.00hypothetical protein POPTR_0008s05080g [Populus trichocarpa][more]
gi|823250341|ref|XP_012457759.1|4.8e-2237.28PREDICTED: protein UPSTREAM OF FLC-like isoform X1 [Gossypium raimondii][more]
gi|590563698|ref|XP_007009444.1|1.5e-2044.51Domain of Uncharacterized protein function, putative [Theobroma cacao][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010369DUF966
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009920 cell plate formation involved in plant-type cell wall biogenesis
cellular_component GO:0005575 cellular_component
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
molecular_function GO:0003674 molecular_function
molecular_function GO:0003729 mRNA binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005488 binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G002340.1CmoCh04G002340.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010369Protein of unknown function DUF966PFAMPF06136DUF966coord: 149..277
score: 1.0E-21coord: 45..77
score: 2.8
NoneNo IPR availablePANTHERPTHR31083FAMILY NOT NAMEDcoord: 147..313
score: 1.1E-36coord: 10..99
score: 1.1
NoneNo IPR availablePANTHERPTHR31083:SF4SUBFAMILY NOT NAMEDcoord: 10..99
score: 1.1E-36coord: 147..313
score: 1.1

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G002340Cucurbita moschata (Rifu)cmocmoB259
CmoCh04G002340Cucurbita moschata (Rifu)cmocmoB421
CmoCh04G002340Cucurbita moschata (Rifu)cmocmoB433
CmoCh04G002340Cucurbita moschata (Rifu)cmocmoB448
CmoCh04G002340Cucurbita moschata (Rifu)cmocmoB464
CmoCh04G002340Cucurbita moschata (Rifu)cmocmoB478
CmoCh04G002340Cucumber (Gy14) v1cgycmoB1048
CmoCh04G002340Cucurbita maxima (Rimu)cmacmoB307
CmoCh04G002340Cucurbita maxima (Rimu)cmacmoB660
CmoCh04G002340Cucurbita maxima (Rimu)cmacmoB731
CmoCh04G002340Cucurbita maxima (Rimu)cmacmoB868
CmoCh04G002340Wild cucumber (PI 183967)cmocpiB721
CmoCh04G002340Wild cucumber (PI 183967)cmocpiB755
CmoCh04G002340Cucumber (Chinese Long) v2cmocuB746
CmoCh04G002340Cucumber (Chinese Long) v2cmocuB711
CmoCh04G002340Melon (DHL92) v3.5.1cmomeB619
CmoCh04G002340Melon (DHL92) v3.5.1cmomeB704
CmoCh04G002340Watermelon (Charleston Gray)cmowcgB604
CmoCh04G002340Watermelon (Charleston Gray)cmowcgB651
CmoCh04G002340Watermelon (97103) v1cmowmB644
CmoCh04G002340Watermelon (97103) v1cmowmB715
CmoCh04G002340Cucurbita pepo (Zucchini)cmocpeB653
CmoCh04G002340Cucurbita pepo (Zucchini)cmocpeB674
CmoCh04G002340Cucurbita pepo (Zucchini)cmocpeB692
CmoCh04G002340Cucurbita pepo (Zucchini)cmocpeB705
CmoCh04G002340Bottle gourd (USVL1VR-Ls)cmolsiB619
CmoCh04G002340Bottle gourd (USVL1VR-Ls)cmolsiB630
CmoCh04G002340Bottle gourd (USVL1VR-Ls)cmolsiB634
CmoCh04G002340Bottle gourd (USVL1VR-Ls)cmolsiB655
CmoCh04G002340Cucumber (Gy14) v2cgybcmoB389
CmoCh04G002340Cucumber (Gy14) v2cgybcmoB522
CmoCh04G002340Cucumber (Gy14) v2cgybcmoB662
CmoCh04G002340Melon (DHL92) v3.6.1cmomedB710
CmoCh04G002340Melon (DHL92) v3.6.1cmomedB770
CmoCh04G002340Melon (DHL92) v3.6.1cmomedB798
CmoCh04G002340Silver-seed gourdcarcmoB0369
CmoCh04G002340Silver-seed gourdcarcmoB0422
CmoCh04G002340Silver-seed gourdcarcmoB0924
CmoCh04G002340Silver-seed gourdcarcmoB1247
CmoCh04G002340Cucumber (Chinese Long) v3cmocucB0817
CmoCh04G002340Cucumber (Chinese Long) v3cmocucB0837
CmoCh04G002340Cucumber (Chinese Long) v3cmocucB0882
CmoCh04G002340Cucumber (Chinese Long) v3cmocucB0908
CmoCh04G002340Watermelon (97103) v2cmowmbB693
CmoCh04G002340Watermelon (97103) v2cmowmbB716
CmoCh04G002340Watermelon (97103) v2cmowmbB722
CmoCh04G002340Watermelon (97103) v2cmowmbB768
CmoCh04G002340Wax gourdcmowgoB0821
CmoCh04G002340Wax gourdcmowgoB0842
CmoCh04G002340Wax gourdcmowgoB0876
CmoCh04G002340Wax gourdcmowgoB0877