CmoCh04G002340 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGTCAATGCGGAAAGGAGAAGAGAGACATTGGCGTCAAGTGAAGGGCGGAGCAGAGGAACGAGTCTCTGTCCTGAACAAGCCGAAACCAAAACCATGACAGAGATGAAAACAGAGCATGCAGAAACCATACCTGTAATATACTACCTCACACGCAATGGCCAGCTCGAGCATCCTCATTTGCTGGAGGTTCCTCTTTCTTCTTCCCGCGGACTCTTTCTCAGAGGTAAACTCAATCTTCTCTTTATTTCGTCGAACGATTTCTTTGTTTGTCAATTTTCATCTCAGTCTGATTTGCTTCTCAGATGTGATCAAAAGACTCGATATATTTCGAGGAGAATACTTTTCCAGAATGTATTCGTGGTCTTCGAAGCGGTAAGTACGGATGATTTTCTGTTTTTTTTGTGTGAAACGGTTGTTGAGAATACGATTTTCGTGTATTTTCCTTCTTGTTCTTCTTTTTTTTTTTTTTTTTTCCCAATCGATTAAACACAAATTCGCTTCATATATTACGATCAATCGAGCAATTACTTGCGATTTCAGGCGGTACAAAAGCGGATACGTATGGCAAGACCTATCAGACGACGATCTGATACATCCATCTCAAGGTCGAGAGTACATTCTCAAAGGATCGGAAGTGCGCTTGCTAGAGGCGTCTTCGAGTTTCCGATCTTGCGAATCATCATCGTCGTTTTCGGAGTCGAAATTTTCATCAGAGACGAACAATTCGAGCACGGATTCGAATTTTGCCGTCGCGGTGAAGAGAAACAACCAGTCTTGGAATTCGCTGGAAGATCTTTGCAGAAACGTAGTGTACAAGGCGAAAATTTCCGGCGAAGGCGGCACGAACGCGGCGACGCAGACCGGCGAGAGGCGGCGTAAATGCACGGACGGCGGAGAGGAAGTTTCTAACTCTGGAGTTGCAAGAACGGAGAGCTTGAGGTCTGTGGATTGTGAAGGAGCGGCGGATTTGAGGGATCAGACGGCTGGGAAGAGCAATAGGTGGAAGACATCAACGGTTCTGATGCAGTTGATCAAGTGTAACTTTTAAAATTGCAATATATTTTCTTTAAACAAAAATTCCCCTCATGTTCTTAATAATTATAATAATAAAAATAAAAAGACCACAT ATGGCGGTCAATGCGGAAAGGAGAAGAGAGACATTGGCGTCAAGTGAAGGGCGGAGCAGAGGAACGAGTCTCTGTCCTGAACAAGCCGAAACCAAAACCATGACAGAGATGAAAACAGAGCATGCAGAAACCATACCTGTAATATACTACCTCACACGCAATGGCCAGCTCGAGCATCCTCATTTGCTGGAGGTTCCTCTTTCTTCTTCCCGCGGACTCTTTCTCAGAGGTAAACTCAATCTTCTCTTTATTTCGTCGAACGATTTCTTTGTTTGTCAATTTTCATCTCAGTCTGATTTGCTTCTCAGATGTGATCAAAAGACTCGATATATTTCGAGGAGAATACTTTTCCAGAATGTATTCGTGGTCTTCGAAGCGGTAAGTACGGATGATTTTCTGTTTTTTTTGTGTGAAACGGTTGTTGAGAATACGATTTTCGTGCGGTACAAAAGCGGATACGTATGGCAAGACCTATCAGACGACGATCTGATACATCCATCTCAAGGTCGAGAGTACATTCTCAAAGGATCGGAAGTGCGCTTGCTAGAGGCGTCTTCGAGTTTCCGATCTTGCGAATCATCATCGTCGTTTTCGGAGTCGAAATTTTCATCAGAGACGAACAATTCGAGCACGGATTCGAATTTTGCCGTCGCGGTGAAGAGAAACAACCAGTCTTGGAATTCGCTGGAAGATCTTTGCAGAAACGTAGTGTACAAGGCGAAAATTTCCGGCGAAGGCGGCACGAACGCGGCGACGCAGACCGGCGAGAGGCGGCGTAAATGCACGGACGGCGGAGAGGAAGTTTCTAACTCTGGAGTTGCAAGAACGGAGAGCTTGAGGTCTGTGGATTGTGAAGGAGCGGCGGATTTGAGGGATCAGACGGCTGGGAAGAGCAATAGGTGGAAGACATCAACGGTTCTGATGCAGTTGATCAAGTGTAACTTTTAAAATTGCAATATATTTTCTTTAAACAAAAATTCCCCTCATGTTCTTAATAATTATAATAATAAAAATAAAAAGACCACAT ATGGCGGTCAATGCGGAAAGGAGAAGAGAGACATTGGCGTCAAGTGAAGGGCGGAGCAGAGGAACGAGTCTCTGTCCTGAACAAGCCGAAACCAAAACCATGACAGAGATGAAAACAGAGCATGCAGAAACCATACCTGTAATATACTACCTCACACGCAATGGCCAGCTCGAGCATCCTCATTTGCTGGAGGTTCCTCTTTCTTCTTCCCGCGGACTCTTTCTCAGAGGTAAACTCAATCTTCTCTTTATTTCGTCGAACGATTTCTTTGTTTGTCAATTTTCATCTCAGTCTGATTTGCTTCTCAGATGTGATCAAAAGACTCGATATATTTCGAGGAGAATACTTTTCCAGAATGTATTCGTGGTCTTCGAAGCGGTAAGTACGGATGATTTTCTGTTTTTTTTGTGTGAAACGGTTGTTGAGAATACGATTTTCGTGCGGTACAAAAGCGGATACGTATGGCAAGACCTATCAGACGACGATCTGATACATCCATCTCAAGGTCGAGAGTACATTCTCAAAGGATCGGAAGTGCGCTTGCTAGAGGCGTCTTCGAGTTTCCGATCTTGCGAATCATCATCGTCGTTTTCGGAGTCGAAATTTTCATCAGAGACGAACAATTCGAGCACGGATTCGAATTTTGCCGTCGCGGTGAAGAGAAACAACCAGTCTTGGAATTCGCTGGAAGATCTTTGCAGAAACGTAGTGTACAAGGCGAAAATTTCCGGCGAAGGCGGCACGAACGCGGCGACGCAGACCGGCGAGAGGCGGCGTAAATGCACGGACGGCGGAGAGGAAGTTTCTAACTCTGGAGTTGCAAGAACGGAGAGCTTGAGGTCTGTGGATTGTGAAGGAGCGGCGGATTTGAGGGATCAGACGGCTGGGAAGAGCAATAGGTGGAAGACATCAACGGTTCTGATGCAGTTGATCAAGTGTAACTTTTAA
BLAST of CmoCh04G002340 vs. TrEMBL
Match: A0A0A0KLM4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G180890 PE=4 SV=1) HSP 1 Score: 258.5 bits (659), Expect = 1.1e-65 Identity = 132/174 (75.86%), Postives = 150/174 (86.21%), Query Frame = 1
BLAST of CmoCh04G002340 vs. TrEMBL
Match: B9HM51_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s05080g PE=4 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 7.1e-25 Identity = 119/340 (35.00%), Postives = 166/340 (48.82%), Query Frame = 1
BLAST of CmoCh04G002340 vs. TrEMBL
Match: A0A061FU34_THECC (Domain of Uncharacterized protein function, putative OS=Theobroma cacao GN=TCM_042839 PE=4 SV=1) HSP 1 Score: 109.0 bits (271), Expect = 1.1e-20 Identity = 81/182 (44.51%), Postives = 106/182 (58.24%), Query Frame = 1
BLAST of CmoCh04G002340 vs. TrEMBL
Match: V7BA03_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G011100g PE=4 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 9.0e-20 Identity = 80/181 (44.20%), Postives = 108/181 (59.67%), Query Frame = 1
BLAST of CmoCh04G002340 vs. TrEMBL
Match: A0A0B0P7T7_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_07328 PE=4 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 1.3e-18 Identity = 80/173 (46.24%), Postives = 106/173 (61.27%), Query Frame = 1
BLAST of CmoCh04G002340 vs. TAIR10
Match: AT5G59790.1 (AT5G59790.1 Domain of unknown function (DUF966)) HSP 1 Score: 87.0 bits (214), Expect = 2.2e-17 Identity = 97/306 (31.70%), Postives = 132/306 (43.14%), Query Frame = 1
BLAST of CmoCh04G002340 vs. TAIR10
Match: AT3G46110.1 (AT3G46110.1 Domain of unknown function (DUF966)) HSP 1 Score: 84.0 bits (206), Expect = 1.9e-16 Identity = 85/304 (27.96%), Postives = 128/304 (42.11%), Query Frame = 1
BLAST of CmoCh04G002340 vs. TAIR10
Match: AT1G05577.1 (AT1G05577.1 Domain of unknown function (DUF966)) HSP 1 Score: 54.7 bits (130), Expect = 1.2e-07 Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 1
BLAST of CmoCh04G002340 vs. NCBI nr
Match: gi|659123394|ref|XP_008461641.1| (PREDICTED: uncharacterized protein LOC103500195 [Cucumis melo]) HSP 1 Score: 266.2 bits (679), Expect = 7.5e-68 Identity = 138/174 (79.31%), Postives = 154/174 (88.51%), Query Frame = 1
BLAST of CmoCh04G002340 vs. NCBI nr
Match: gi|449459970|ref|XP_004147719.1| (PREDICTED: uncharacterized protein LOC101206550 [Cucumis sativus]) HSP 1 Score: 258.5 bits (659), Expect = 1.6e-65 Identity = 132/174 (75.86%), Postives = 150/174 (86.21%), Query Frame = 1
BLAST of CmoCh04G002340 vs. NCBI nr
Match: gi|224098290|ref|XP_002311147.1| (hypothetical protein POPTR_0008s05080g [Populus trichocarpa]) HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24 Identity = 119/340 (35.00%), Postives = 166/340 (48.82%), Query Frame = 1
BLAST of CmoCh04G002340 vs. NCBI nr
Match: gi|823250341|ref|XP_012457759.1| (PREDICTED: protein UPSTREAM OF FLC-like isoform X1 [Gossypium raimondii]) HSP 1 Score: 114.0 bits (284), Expect = 4.8e-22 Identity = 107/287 (37.28%), Postives = 149/287 (51.92%), Query Frame = 1
BLAST of CmoCh04G002340 vs. NCBI nr
Match: gi|590563698|ref|XP_007009444.1| (Domain of Uncharacterized protein function, putative [Theobroma cacao]) HSP 1 Score: 109.0 bits (271), Expect = 1.5e-20 Identity = 81/182 (44.51%), Postives = 106/182 (58.24%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |