CmoCh04G002110 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G002110
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionExpansin 1
LocationCmo_Chr04 : 1056541 .. 1057947 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTCTTTTTCCTCTGTTTCCCTCCATAAATACCAATCCCCCATTCATCTCAATCTTCACATTCACATTCAAATTCTTCGCTTCATTTGCGGTTCTAACAATGGCTGCTATTCCTATTTCTCTTCTCGCCATTATTATCTCCCTGCTCTCTGTCGACGCTAGGATCCCTGGAGTTTACTCTGGCGGCCAGTGGCAGAGCGCTCATGCTACTTTTTATGGCGGCAGTGATGCCTCTGGAACCATGGGTATGCTCTTTGTTTTTTTTTTTTTTCACGGTTTTTAGTCTGGAATTATCACGCATTGTATCGCCTTTTGTTTCGGTTCGACTGTCTCTGAAAATTCTAGGTAGTTGTAATTCTATTTTTGATCGTTTGACTTGATTGTCAGAGAATTGTCTGCGTTTCATTCAACCTAGTTGTGAATTATCGTTTGATTTTCCTGAGAGGAAATTGTGTGTGATTTTGATCGAATGATGCTGTGTTTGCTCTTTCTCGATCGGACTTTCTGTTAGAAACCTAGTTGTGAAGGATCATTTGAATTAACTGAGAGAGTGTTGTTTGTGTTCGATTCTAATGTTGTGCTTGCTTCTTCTCGAATTTTCTCTCTGGAAGCCTCGTTACTTATGATAACTTCAATTGATCTCGGGAGTATTGTGTGTATTTGGTTCAATTGTCGTGTTGCTTTTTTCGTCGAATTTTTCTCTGGAAAACCTAGTTTAGGACGATCGGTTGAATTGATTTGAGAAAGAATTGTGCGTTTGATTGATTCAGGTGGTGCTTGTGGTTACGGAAACTTGTACAGCCAAGGTTATGGCGTGAATACCGCGGCGTTGAGCACTGCTTTGTTCAACAACGGTTTAAGCTGCGGAGCTTGCTTCGAGCTCAAGTGCGCTAACGATCCGCAGTGGTGCCATGCCGGCAGTCCGTCGATTTTCATCACCGCCACAAACTTTTGCCCTCCTAACTACGCTCTTCCGAGCGACAATGGAGGCTGGTGCAACCCTCCCCGTCCTCATTTCGACCTCGCAATGCCTATGTTCCTCAAGATCGCCGAGTACAGAGCCGGAATCGTTCCAGTCTCTTTTCGAAGGTAAAAAAGAAGAACTCTCTTTTCTTTTCAGTAGATAACGCCGTCACTTTATTAAACTAGAAAACGAGCCAGATATTTGCCAAACCGCGTGAGTAATCGAGATCTGTGAATGAACTGGAGTAATCTCGACCGTCTGATTTTCACTGTACTGTATTTTGGTACTTCACAGTGAAGTTGGAAAATCGGGTACAGAGTATTACTTTTTCCGTGGAATCTTAGACCTAGTTATCCTGGCTCTGTTTCATGACTTCATCATCCTCGTGCCTCTCTTAAAGGAGAAATTATTGGACGCGATGGCACCCTCGAACATGCCATAG

mRNA sequence

TTTTTCTTTTTCCTCTGTTTCCCTCCATAAATACCAATCCCCCATTCATCTCAATCTTCACATTCACATTCAAATTCTTCGCTTCATTTGCGGTTCTAACAATGGCTGCTATTCCTATTTCTCTTCTCGCCATTATTATCTCCCTGCTCTCTGTCGACGCTAGGATCCCTGGAGTTTACTCTGGCGGCCAGTGGCAGAGCGCTCATGCTACTTTTTATGGCGGCAGTGATGCCTCTGGAACCATGGGTGGTGCTTGTGGTTACGGAAACTTGTACAGCCAAGGTTATGGCGTGAATACCGCGGCGTTGAGCACTGCTTTGTTCAACAACGGTTTAAGCTGCGGAGCTTGCTTCGAGCTCAAGTGCGCTAACGATCCGCAGTGGTGCCATGCCGGCAGTCCGTCGATTTTCATCACCGCCACAAACTTTTGCCCTCCTAACTACGCTCTTCCGAGCGACAATGGAGGCTGGTGCAACCCTCCCCGTCCTCATTTCGACCTCGCAATGCCTATGTTCCTCAAGATCGCCGAGTACAGAGCCGGAATCGTTCCAGTCTCTTTTCGAAGTGAAGTTGGAAAATCGGGTACAGAGTATTACTTTTTCCGTGGAATCTTAGACCTAGTTATCCTGGCTCTGTTTCATGACTTCATCATCCTCGTGCCTCTCTTAAAGGAGAAATTATTGGACGCGATGGCACCCTCGAACATGCCATAG

Coding sequence (CDS)

ATGGCTGCTATTCCTATTTCTCTTCTCGCCATTATTATCTCCCTGCTCTCTGTCGACGCTAGGATCCCTGGAGTTTACTCTGGCGGCCAGTGGCAGAGCGCTCATGCTACTTTTTATGGCGGCAGTGATGCCTCTGGAACCATGGGTGGTGCTTGTGGTTACGGAAACTTGTACAGCCAAGGTTATGGCGTGAATACCGCGGCGTTGAGCACTGCTTTGTTCAACAACGGTTTAAGCTGCGGAGCTTGCTTCGAGCTCAAGTGCGCTAACGATCCGCAGTGGTGCCATGCCGGCAGTCCGTCGATTTTCATCACCGCCACAAACTTTTGCCCTCCTAACTACGCTCTTCCGAGCGACAATGGAGGCTGGTGCAACCCTCCCCGTCCTCATTTCGACCTCGCAATGCCTATGTTCCTCAAGATCGCCGAGTACAGAGCCGGAATCGTTCCAGTCTCTTTTCGAAGTGAAGTTGGAAAATCGGGTACAGAGTATTACTTTTTCCGTGGAATCTTAGACCTAGTTATCCTGGCTCTGTTTCATGACTTCATCATCCTCGTGCCTCTCTTAAAGGAGAAATTATTGGACGCGATGGCACCCTCGAACATGCCATAG
Homology
[Close]
BLAST of CmoCh04G002110 vs. Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 279.3 bits (713), Expect = 3.5e-74
Identity = 130/154 (84.42%), Postives = 143/154 (92.86%), Query Frame = 1 

Query: 1   MAAIPISLLAIIISLLSVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQ 60
           M  + +S+L  I++L   +ARIPGVY+GG W++AHATFYGGSDASGTMGGACGYGNLYSQ
Sbjct: 3   MLGLVLSVLTTILALS--EARIPGVYNGGGWETAHATFYGGSDASGTMGGACGYGNLYSQ 62

Query: 61  GYGVNTAALSTALFNNGLSCGACFELKCANDPQWCHAGSPSIFITATNFCPPNYALPSDN 120
           GYGVNTAALSTALFNNG SCGACFELKCA+DP+WCH+GSPSIFITATNFCPPN+A PSDN
Sbjct: 63  GYGVNTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDN 122

Query: 121 GGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFR 155
           GGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFR
Sbjct: 123 GGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFR 154

[Close]
BLAST of CmoCh04G002110 vs. Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.1e-72
Identity = 128/153 (83.66%), Postives = 139/153 (90.85%), Query Frame = 1 

Query: 3   AIPISLLAIIISLLSV-DARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQG 62
           AI +++L     L S+ DARIPG+YSGG WQ+AHATFYGGSDASGTMGGACGYGNLYSQG
Sbjct: 2   AIKLAILFTTFVLFSLADARIPGIYSGGAWQNAHATFYGGSDASGTMGGACGYGNLYSQG 61

Query: 63  YGVNTAALSTALFNNGLSCGACFELKCANDPQWCHAGSPSIFITATNFCPPNYALPSDNG 122
           YG NTAALSTALFNNG+SCGACFELKCANDPQWCH+GSPSI ITATNFCPPN A PSDNG
Sbjct: 62  YGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNG 121

Query: 123 GWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFR 155
           GWCNPPR HFDLAMP+FLKIA+YRAGIVPVS+R
Sbjct: 122 GWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYR 154

[Close]
BLAST of CmoCh04G002110 vs. Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 5.7e-69
Identity = 123/161 (76.40%), Postives = 137/161 (85.09%), Query Frame = 1 

Query: 1   MAAIPISLLAIIISLLSVDA-----RIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYG 60
           M+  P  L+ ++ +++++       RIPG Y GG+WQSAHATFYGGSDASGTMGGACGYG
Sbjct: 1   MSPAPRVLVLVVATVVALQVSPAAGRIPGAYGGGEWQSAHATFYGGSDASGTMGGACGYG 60

Query: 61  NLYSQGYGVNTAALSTALFNNGLSCGACFELKCANDP--QWCHAGSPSIFITATNFCPPN 120
           NLYSQGYGVN AALSTALFN+G SCGACFE+KC N P  +WCH GSPSI ITATNFCPPN
Sbjct: 61  NLYSQGYGVNNAALSTALFNSGQSCGACFEIKCVNQPGWEWCHPGSPSILITATNFCPPN 120

Query: 121 YALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFR 155
           YALPSDNGGWCNPPRPHFDLAMPMFL IAEYRAGIVPVS+R
Sbjct: 121 YALPSDNGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYR 161

[Close]
BLAST of CmoCh04G002110 vs. Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.8e-68
Identity = 122/157 (77.71%), Postives = 137/157 (87.26%), Query Frame = 1 

Query: 1   MAAIPISLLAI--IISLLS-VDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNL 60
           MA  P+ LL I  +  LLS  DA IP V+SGG WQ+AHATFYGG+DASGTMGGACGYGNL
Sbjct: 1   MAINPLILLTIFPLFLLLSFTDAGIPRVFSGGSWQTAHATFYGGNDASGTMGGACGYGNL 60

Query: 61  YSQGYGVNTAALSTALFNNGLSCGACFELKCANDPQWCHAGSPSIFITATNFCPPNYALP 120
           YSQGYG NTAALST+LFN+G SCGACFE+KC NDP+WCH G+PS+F+TATNFCPPN A P
Sbjct: 61  YSQGYGTNTAALSTSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQP 120

Query: 121 SDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFR 155
           SDNGGWCNPPR HFDLAMP+FLKIAEYRAGIVP+S+R
Sbjct: 121 SDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYR 157

[Close]
BLAST of CmoCh04G002110 vs. Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 6.3e-68
Identity = 119/148 (80.41%), Postives = 132/148 (89.19%), Query Frame = 1 

Query: 9   LAIIISLL--SVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNT 68
           LA+  S L  + +A+IPGVYSGG WQ+AHATFYGGSDASGTMGGACGYGNLYSQGYGVNT
Sbjct: 12  LAVTASFLLTATNAKIPGVYSGGPWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNT 71

Query: 69  AALSTALFNNGLSCGACFELKCANDPQWCHAGSPSIFITATNFCPPNYALPSDNGGWCNP 128
           AALSTALFNNG SCGACFE+KC +DP+WC  G+PSI +TATNFCPPN+A PSD+GGWCNP
Sbjct: 72  AALSTALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWCNP 131

Query: 129 PRPHFDLAMPMFLKIAEYRAGIVPVSFR 155
           PR HFDLAMPMFLKI  YRAGIVPVS+R
Sbjct: 132 PREHFDLAMPMFLKIGLYRAGIVPVSYR 159

[Close]
BLAST of CmoCh04G002110 vs. TrEMBL
Match: Q8W5A4_CUCSA (Alpha-expansin 9 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.5e-79
Identity = 141/152 (92.76%), Postives = 149/152 (98.03%), Query Frame = 1 

Query: 3   AIPISLLAIIISLLSVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGY 62
           A+ ++LL I++SLL+V ARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGY
Sbjct: 5   ALSLTLLPILLSLLTVHARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGY 64

Query: 63  GVNTAALSTALFNNGLSCGACFELKCANDPQWCHAGSPSIFITATNFCPPNYALPSDNGG 122
           GVNTAALSTALFNNGLSCGACFELKCANDPQWCH+GSPSIFITATNFCPPNYALPSDNGG
Sbjct: 65  GVNTAALSTALFNNGLSCGACFELKCANDPQWCHSGSPSIFITATNFCPPNYALPSDNGG 124

Query: 123 WCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFR 155
           WCNPPRPHFDLAMPMFLKIAEYRAGIVPVS+R
Sbjct: 125 WCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYR 156

[Close]
BLAST of CmoCh04G002110 vs. TrEMBL
Match: A0A0A0KS81_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G182120 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.5e-79
Identity = 141/152 (92.76%), Postives = 149/152 (98.03%), Query Frame = 1 

Query: 3   AIPISLLAIIISLLSVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGY 62
           A+ ++LL I++SLL+V ARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGY
Sbjct: 5   ALSLTLLPILLSLLTVHARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGY 64

Query: 63  GVNTAALSTALFNNGLSCGACFELKCANDPQWCHAGSPSIFITATNFCPPNYALPSDNGG 122
           GVNTAALSTALFNNGLSCGACFELKCANDPQWCH+GSPSIFITATNFCPPNYALPSDNGG
Sbjct: 65  GVNTAALSTALFNNGLSCGACFELKCANDPQWCHSGSPSIFITATNFCPPNYALPSDNGG 124

Query: 123 WCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFR 155
           WCNPPRPHFDLAMPMFLKIAEYRAGIVPVS+R
Sbjct: 125 WCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYR 156

[Close]
BLAST of CmoCh04G002110 vs. TrEMBL
Match: A0A067LJT8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01440 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 7.5e-76
Identity = 133/149 (89.26%), Postives = 142/149 (95.30%), Query Frame = 1 

Query: 6   ISLLAIIISLLSVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVN 65
           IS+  +++ L   DARIPGVYSGG W+SAHATFYGGSDASGTMGGACGYGNLYSQGYGVN
Sbjct: 7   ISIFCLLLVLKLADARIPGVYSGGSWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVN 66

Query: 66  TAALSTALFNNGLSCGACFELKCANDPQWCHAGSPSIFITATNFCPPNYALPSDNGGWCN 125
           TAALSTALFNNGLSCGACFE+KCAN+PQWCH+GSPSIFITATNFCPPNYALPSDNGGWCN
Sbjct: 67  TAALSTALFNNGLSCGACFEIKCANEPQWCHSGSPSIFITATNFCPPNYALPSDNGGWCN 126

Query: 126 PPRPHFDLAMPMFLKIAEYRAGIVPVSFR 155
           PPRPHFDLAMPMFLKIAEYRAGIVPVS+R
Sbjct: 127 PPRPHFDLAMPMFLKIAEYRAGIVPVSYR 155

[Close]
BLAST of CmoCh04G002110 vs. TrEMBL
Match: A0A061FL32_THECC (Expansin A4, ALPHA 1.6,EXPA4 OS=Theobroma cacao GN=TCM_042703 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.7e-75
Identity = 132/154 (85.71%), Postives = 147/154 (95.45%), Query Frame = 1 

Query: 1   MAAIPISLLAIIISLLSVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQ 60
           + ++   L+A+ + L++V+ARIPGVYSG +WQ+AHATFYGGSDASGTMGGACGYGNLYSQ
Sbjct: 3   IGSVVACLVALNLILVAVEARIPGVYSGAEWQTAHATFYGGSDASGTMGGACGYGNLYSQ 62

Query: 61  GYGVNTAALSTALFNNGLSCGACFELKCANDPQWCHAGSPSIFITATNFCPPNYALPSDN 120
           GYGVNTAALSTALFNNGLSCGACFE+KCAN+PQWCHAGSPSIF+TATNFCPPNYALPSDN
Sbjct: 63  GYGVNTAALSTALFNNGLSCGACFEIKCANEPQWCHAGSPSIFVTATNFCPPNYALPSDN 122

Query: 121 GGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFR 155
           GGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVS+R
Sbjct: 123 GGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYR 156

[Close]
BLAST of CmoCh04G002110 vs. TrEMBL
Match: Q49QW6_POPTO (Expansin OS=Populus tomentosa PE=2 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.8e-75
Identity = 133/153 (86.93%), Postives = 144/153 (94.12%), Query Frame = 1 

Query: 2   AAIPISLLAIIISLLSVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQG 61
           A   IS +++++ L  V+ARIPGVY+G  WQSAHATFYGGSDASGTMGGACGYGNLYSQG
Sbjct: 3   ARATISFISLVLLLSLVEARIPGVYTGADWQSAHATFYGGSDASGTMGGACGYGNLYSQG 62

Query: 62  YGVNTAALSTALFNNGLSCGACFELKCANDPQWCHAGSPSIFITATNFCPPNYALPSDNG 121
           YGVNTAALSTALFNNGLSCGACFE+KCAN+PQWCH+GSPSIFITATNFCPPNYALPSDNG
Sbjct: 63  YGVNTAALSTALFNNGLSCGACFEIKCANEPQWCHSGSPSIFITATNFCPPNYALPSDNG 122

Query: 122 GWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFR 155
           GWCNPPRPHFDLAMPMFLKIAEYRAGIVPVS+R
Sbjct: 123 GWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYR 155

[Close]
BLAST of CmoCh04G002110 vs. TAIR10
Match: AT2G28950.1 (AT2G28950.1 expansin A6)

HSP 1 Score: 279.3 bits (713), Expect = 1.9e-75
Identity = 130/154 (84.42%), Postives = 143/154 (92.86%), Query Frame = 1 

Query: 1   MAAIPISLLAIIISLLSVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQ 60
           M  + +S+L  I++L   +ARIPGVY+GG W++AHATFYGGSDASGTMGGACGYGNLYSQ
Sbjct: 3   MLGLVLSVLTTILALS--EARIPGVYNGGGWETAHATFYGGSDASGTMGGACGYGNLYSQ 62

Query: 61  GYGVNTAALSTALFNNGLSCGACFELKCANDPQWCHAGSPSIFITATNFCPPNYALPSDN 120
           GYGVNTAALSTALFNNG SCGACFELKCA+DP+WCH+GSPSIFITATNFCPPN+A PSDN
Sbjct: 63  GYGVNTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDN 122

Query: 121 GGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFR 155
           GGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFR
Sbjct: 123 GGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFR 154

[Close]
BLAST of CmoCh04G002110 vs. TAIR10
Match: AT2G39700.1 (AT2G39700.1 expansin A4)

HSP 1 Score: 274.2 bits (700), Expect = 6.3e-74
Identity = 128/153 (83.66%), Postives = 139/153 (90.85%), Query Frame = 1 

Query: 3   AIPISLLAIIISLLSV-DARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQG 62
           AI +++L     L S+ DARIPG+YSGG WQ+AHATFYGGSDASGTMGGACGYGNLYSQG
Sbjct: 2   AIKLAILFTTFVLFSLADARIPGIYSGGAWQNAHATFYGGSDASGTMGGACGYGNLYSQG 61

Query: 63  YGVNTAALSTALFNNGLSCGACFELKCANDPQWCHAGSPSIFITATNFCPPNYALPSDNG 122
           YG NTAALSTALFNNG+SCGACFELKCANDPQWCH+GSPSI ITATNFCPPN A PSDNG
Sbjct: 62  YGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNG 121

Query: 123 GWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFR 155
           GWCNPPR HFDLAMP+FLKIA+YRAGIVPVS+R
Sbjct: 122 GWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYR 154

[Close]
BLAST of CmoCh04G002110 vs. TAIR10
Match: AT3G55500.1 (AT3G55500.1 expansin A16)

HSP 1 Score: 259.6 bits (662), Expect = 1.6e-69
Identity = 122/157 (77.71%), Postives = 137/157 (87.26%), Query Frame = 1 

Query: 1   MAAIPISLLAI--IISLLS-VDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNL 60
           MA  P+ LL I  +  LLS  DA IP V+SGG WQ+AHATFYGG+DASGTMGGACGYGNL
Sbjct: 1   MAINPLILLTIFPLFLLLSFTDAGIPRVFSGGSWQTAHATFYGGNDASGTMGGACGYGNL 60

Query: 61  YSQGYGVNTAALSTALFNNGLSCGACFELKCANDPQWCHAGSPSIFITATNFCPPNYALP 120
           YSQGYG NTAALST+LFN+G SCGACFE+KC NDP+WCH G+PS+F+TATNFCPPN A P
Sbjct: 61  YSQGYGTNTAALSTSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQP 120

Query: 121 SDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFR 155
           SDNGGWCNPPR HFDLAMP+FLKIAEYRAGIVP+S+R
Sbjct: 121 SDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYR 157

[Close]
BLAST of CmoCh04G002110 vs. TAIR10
Match: AT2G37640.1 (AT2G37640.1 Barwin-like endoglucanases superfamily protein)

HSP 1 Score: 258.5 bits (659), Expect = 3.6e-69
Identity = 119/148 (80.41%), Postives = 132/148 (89.19%), Query Frame = 1 

Query: 9   LAIIISLL--SVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNT 68
           LA+  S L  + +A+IPGVYSGG WQ+AHATFYGGSDASGTMGGACGYGNLYSQGYGVNT
Sbjct: 12  LAVTASFLLTATNAKIPGVYSGGPWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNT 71

Query: 69  AALSTALFNNGLSCGACFELKCANDPQWCHAGSPSIFITATNFCPPNYALPSDNGGWCNP 128
           AALSTALFNNG SCGACFE+KC +DP+WC  G+PSI +TATNFCPPN+A PSD+GGWCNP
Sbjct: 72  AALSTALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWCNP 131

Query: 129 PRPHFDLAMPMFLKIAEYRAGIVPVSFR 155
           PR HFDLAMPMFLKI  YRAGIVPVS+R
Sbjct: 132 PREHFDLAMPMFLKIGLYRAGIVPVSYR 159

[Close]
BLAST of CmoCh04G002110 vs. TAIR10
Match: AT5G02260.1 (AT5G02260.1 expansin A9)

HSP 1 Score: 251.1 bits (640), Expect = 5.7e-67
Identity = 117/155 (75.48%), Postives = 135/155 (87.10%), Query Frame = 1 

Query: 1   MAAIPISLLAI-IISLLSVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYS 60
           MAA  I+ +A+ +++  + +A+IPGVY+GG W +AHATFYG +DASGTMGGACGYGNLYS
Sbjct: 1   MAAKVITFMAVMVVTAFTANAKIPGVYTGGPWINAHATFYGEADASGTMGGACGYGNLYS 60

Query: 61  QGYGVNTAALSTALFNNGLSCGACFELKCANDPQWCHAGSPSIFITATNFCPPNYALPSD 120
           QGYGVNTAALSTALFNNGLSCG+CFELKC NDP WC  G+PSI ITATNFCPPN+   SD
Sbjct: 61  QGYGVNTAALSTALFNNGLSCGSCFELKCINDPGWCLPGNPSILITATNFCPPNFNQASD 120

Query: 121 NGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFR 155
           NGGWCNPPR HFDLAMPMFL IA+Y+AGIVPVS+R
Sbjct: 121 NGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYR 155

[Close]
BLAST of CmoCh04G002110 vs. NCBI nr
Match: gi|659123469|ref|XP_008461679.1| (PREDICTED: expansin-A4 [Cucumis melo])

HSP 1 Score: 305.4 bits (781), Expect = 7.2e-80
Identity = 141/151 (93.38%), Postives = 149/151 (98.68%), Query Frame = 1 

Query: 4   IPISLLAIIISLLSVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGYG 63
           +P++LL I++SLL+V ARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGYG
Sbjct: 7   LPLTLLPILLSLLTVHARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGYG 66

Query: 64  VNTAALSTALFNNGLSCGACFELKCANDPQWCHAGSPSIFITATNFCPPNYALPSDNGGW 123
           VNTAALSTALFNNGLSCGACFELKCANDPQWCH+GSPSIFITATNFCPPNYALPSDNGGW
Sbjct: 67  VNTAALSTALFNNGLSCGACFELKCANDPQWCHSGSPSIFITATNFCPPNYALPSDNGGW 126

Query: 124 CNPPRPHFDLAMPMFLKIAEYRAGIVPVSFR 155
           CNPPRPHFDLAMPMFLKIAEYRAGIVPVS+R
Sbjct: 127 CNPPRPHFDLAMPMFLKIAEYRAGIVPVSYR 157

[Close]
BLAST of CmoCh04G002110 vs. NCBI nr
Match: gi|449459902|ref|XP_004147685.1| (PREDICTED: expansin-A4 [Cucumis sativus])

HSP 1 Score: 303.9 bits (777), Expect = 2.1e-79
Identity = 141/152 (92.76%), Postives = 149/152 (98.03%), Query Frame = 1 

Query: 3   AIPISLLAIIISLLSVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGY 62
           A+ ++LL I++SLL+V ARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGY
Sbjct: 5   ALSLTLLPILLSLLTVHARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGY 64

Query: 63  GVNTAALSTALFNNGLSCGACFELKCANDPQWCHAGSPSIFITATNFCPPNYALPSDNGG 122
           GVNTAALSTALFNNGLSCGACFELKCANDPQWCH+GSPSIFITATNFCPPNYALPSDNGG
Sbjct: 65  GVNTAALSTALFNNGLSCGACFELKCANDPQWCHSGSPSIFITATNFCPPNYALPSDNGG 124

Query: 123 WCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFR 155
           WCNPPRPHFDLAMPMFLKIAEYRAGIVPVS+R
Sbjct: 125 WCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYR 156

[Close]
BLAST of CmoCh04G002110 vs. NCBI nr
Match: gi|16923365|gb|AAL31480.1|AF319475_1 (alpha-expansin 9 precursor [Cucumis sativus])

HSP 1 Score: 303.9 bits (777), Expect = 2.1e-79
Identity = 141/152 (92.76%), Postives = 149/152 (98.03%), Query Frame = 1 

Query: 3   AIPISLLAIIISLLSVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGY 62
           A+ ++LL I++SLL+V ARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGY
Sbjct: 5   ALSLTLLPILLSLLTVHARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGY 64

Query: 63  GVNTAALSTALFNNGLSCGACFELKCANDPQWCHAGSPSIFITATNFCPPNYALPSDNGG 122
           GVNTAALSTALFNNGLSCGACFELKCANDPQWCH+GSPSIFITATNFCPPNYALPSDNGG
Sbjct: 65  GVNTAALSTALFNNGLSCGACFELKCANDPQWCHSGSPSIFITATNFCPPNYALPSDNGG 124

Query: 123 WCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFR 155
           WCNPPRPHFDLAMPMFLKIAEYRAGIVPVS+R
Sbjct: 125 WCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYR 156

[Close]
BLAST of CmoCh04G002110 vs. NCBI nr
Match: gi|802547201|ref|XP_012089051.1| (PREDICTED: expansin-A4 [Jatropha curcas])

HSP 1 Score: 291.6 bits (745), Expect = 1.1e-75
Identity = 133/149 (89.26%), Postives = 142/149 (95.30%), Query Frame = 1 

Query: 6   ISLLAIIISLLSVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVN 65
           IS+  +++ L   DARIPGVYSGG W+SAHATFYGGSDASGTMGGACGYGNLYSQGYGVN
Sbjct: 7   ISIFCLLLVLKLADARIPGVYSGGSWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVN 66

Query: 66  TAALSTALFNNGLSCGACFELKCANDPQWCHAGSPSIFITATNFCPPNYALPSDNGGWCN 125
           TAALSTALFNNGLSCGACFE+KCAN+PQWCH+GSPSIFITATNFCPPNYALPSDNGGWCN
Sbjct: 67  TAALSTALFNNGLSCGACFEIKCANEPQWCHSGSPSIFITATNFCPPNYALPSDNGGWCN 126

Query: 126 PPRPHFDLAMPMFLKIAEYRAGIVPVSFR 155
           PPRPHFDLAMPMFLKIAEYRAGIVPVS+R
Sbjct: 127 PPRPHFDLAMPMFLKIAEYRAGIVPVSYR 155

[Close]
BLAST of CmoCh04G002110 vs. NCBI nr
Match: gi|1009120336|ref|XP_015876867.1| (PREDICTED: expansin-A4 [Ziziphus jujuba])

HSP 1 Score: 290.8 bits (743), Expect = 1.8e-75
Identity = 134/150 (89.33%), Postives = 144/150 (96.00%), Query Frame = 1 

Query: 9   LAIIISLLS----VDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGV 68
           + +I+SLL+    VDARIPGVY+GGQW+SAHATFYGG DASGTMGGACGYGNLYSQGYGV
Sbjct: 33  MLLILSLLAFTTFVDARIPGVYTGGQWESAHATFYGGGDASGTMGGACGYGNLYSQGYGV 92

Query: 69  NTAALSTALFNNGLSCGACFELKCANDPQWCHAGSPSIFITATNFCPPNYALPSDNGGWC 128
           NTAALSTALFNNGLSCGACFE+KCAN+PQWCHAGSPSIFITATNFCPPNYALP+DNGGWC
Sbjct: 93  NTAALSTALFNNGLSCGACFEIKCANEPQWCHAGSPSIFITATNFCPPNYALPNDNGGWC 152

Query: 129 NPPRPHFDLAMPMFLKIAEYRAGIVPVSFR 155
           NPPRPHFDLAMPMFLKIAEYRAGIVPVS+R
Sbjct: 153 NPPRPHFDLAMPMFLKIAEYRAGIVPVSYR 182

The following BLAST results are available for this feature:
BLAST of CmoCh04G002110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
EXPA6_ARATH3.5e-7484.42Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2[more]
EXPA4_ARATH1.1e-7283.66Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1[more]
EXPA7_ORYSJ5.7e-6976.40Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1[more]
EXP16_ARATH2.8e-6877.71Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1[more]
EXPA3_ARATH6.3e-6880.41Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1[more]
BLAST of CmoCh04G002110 vs. TrEMBL
Match NameE-valueIdentityDescription
Q8W5A4_CUCSA1.5e-7992.76Alpha-expansin 9 (Fragment) OS=Cucumis sativus PE=2 SV=1[more]
A0A0A0KS81_CUCSA1.5e-7992.76Uncharacterized protein OS=Cucumis sativus GN=Csa_5G182120 PE=4 SV=1[more]
A0A067LJT8_JATCU7.5e-7689.26Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01440 PE=4 SV=1[more]
A0A061FL32_THECC1.7e-7585.71Expansin A4, ALPHA 1.6,EXPA4 OS=Theobroma cacao GN=TCM_042703 PE=4 SV=1[more]
Q49QW6_POPTO2.8e-7586.93Expansin OS=Populus tomentosa PE=2 SV=1[more]
BLAST of CmoCh04G002110 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G28950.11.9e-7584.42 expansin A6[more]
AT2G39700.16.3e-7483.66 expansin A4[more]
AT3G55500.11.6e-6977.71 expansin A16[more]
AT2G37640.13.6e-6980.41 Barwin-like endoglucanases superfamily protein[more]
AT5G02260.15.7e-6775.48 expansin A9[more]
BLAST of CmoCh04G002110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659123469|ref|XP_008461679.1|7.2e-8093.38PREDICTED: expansin-A4 [Cucumis melo][more]
gi|449459902|ref|XP_004147685.1|2.1e-7992.76PREDICTED: expansin-A4 [Cucumis sativus][more]
gi|16923365|gb|AAL31480.1|AF319475_12.1e-7992.76alpha-expansin 9 precursor [Cucumis sativus][more]
gi|802547201|ref|XP_012089051.1|1.1e-7589.26PREDICTED: expansin-A4 [Jatropha curcas][more]
gi|1009120336|ref|XP_015876867.1|1.8e-7589.33PREDICTED: expansin-A4 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002963Expansin
IPR007112Expansin/allergen_DPBB_dom
IPR007118Expan_Lol_pI
IPR009009RlpA-like_DPBB
Vocabulary: Biological Process
TermDefinition
GO:0009664plant-type cell wall organization
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009664 plant-type cell wall organization
cellular_component GO:0005618 cell wall
cellular_component GO:0005576 extracellular region
cellular_component GO:0016020 membrane
cellular_component GO:0009505 plant-type cell wall
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G002110.1CmoCh04G002110.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002963ExpansinPRINTSPR01226EXPANSINcoord: 88..99
score: 4.9E-39coord: 61..75
score: 4.9E-39coord: 121..138
score: 4.9E-39coord: 102..112
score: 4.9E-39coord: 138..151
score: 4.9
IPR007112Expansin/pollen allergen, DPBB domainSMARTSM00837dpbb_1coord: 66..153
score: 1.6
IPR007112Expansin/pollen allergen, DPBB domainPROFILEPS50842EXPANSIN_EG45coord: 49..154
score: 26
IPR007118Expansin/Lol pIPRINTSPR01225EXPANSNFAMLYcoord: 30..45
score: 1.1E-30coord: 146..162
score: 1.1E-30coord: 70..88
score: 1.1E-30coord: 48..66
score: 1.1
IPR009009RlpA-like protein, double-psi beta-barrel domainGENE3DG3DSA:2.40.40.10coord: 23..154
score: 2.5
IPR009009RlpA-like protein, double-psi beta-barrel domainPFAMPF03330DPBB_1coord: 66..152
score: 3.3
IPR009009RlpA-like protein, double-psi beta-barrel domainunknownSSF50685Barwin-like endoglucanasescoord: 30..155
score: 5.23
NoneNo IPR availablePANTHERPTHR31867FAMILY NOT NAMEDcoord: 1..154
score: 4.2E
NoneNo IPR availablePANTHERPTHR31867:SF9EXPANSIN-A6coord: 1..154
score: 4.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G002110Lsi04G008890Bottle gourd (USVL1VR-Ls)cmolsiB670
CmoCh04G002110Lsi10G013860Bottle gourd (USVL1VR-Ls)cmolsiB619
CmoCh04G002110Lsi01G014310Bottle gourd (USVL1VR-Ls)cmolsiB630
CmoCh04G002110Lsi02G016250Bottle gourd (USVL1VR-Ls)cmolsiB634
CmoCh04G002110Cp4.1LG05g09340Cucurbita pepo (Zucchini)cmocpeB705
CmoCh04G002110Cp4.1LG10g08650Cucurbita pepo (Zucchini)cmocpeB653
CmoCh04G002110Cp4.1LG01g04870Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G002110MELO3C023866.2Melon (DHL92) v3.6.1cmomedB733
CmoCh04G002110CsaV3_5G026750Cucumber (Chinese Long) v3cmocucB0882
CmoCh04G002110CsaV3_4G025050Cucumber (Chinese Long) v3cmocucB0837
CmoCh04G002110CsaV3_5G008160Cucumber (Chinese Long) v3cmocucB0873
CmoCh04G002110Cla97C04G074810Watermelon (97103) v2cmowmbB722
CmoCh04G002110Cla97C09G181110Watermelon (97103) v2cmowmbB768
CmoCh04G002110Cla97C02G046060Watermelon (97103) v2cmowmbB716
CmoCh04G002110Cla97C07G131710Watermelon (97103) v2cmowmbB755
CmoCh04G002110Bhi06G000853Wax gourdcmowgoB0837
CmoCh04G002110Bhi10G000574Wax gourdcmowgoB0876
CmoCh04G002110CsGy4G014170Cucumber (Gy14) v2cgybcmoB522
CmoCh04G002110CsGy5G007060Cucumber (Gy14) v2cgybcmoB652
CmoCh04G002110Carg20297Silver-seed gourdcarcmoB0422
CmoCh04G002110Carg18323Silver-seed gourdcarcmoB0123
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G002110CmoCh20G004330Cucurbita moschata (Rifu)cmocmoB421
CmoCh04G002110CmoCh03G004350Cucurbita moschata (Rifu)cmocmoB448
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G002110Watermelon (97103) v2cmowmbB693
CmoCh04G002110Wax gourdcmowgoB0821
CmoCh04G002110Cucurbita moschata (Rifu)cmocmoB259
CmoCh04G002110Cucurbita moschata (Rifu)cmocmoB464
CmoCh04G002110Cucurbita moschata (Rifu)cmocmoB478
CmoCh04G002110Cucumber (Gy14) v1cgycmoB0474
CmoCh04G002110Cucurbita maxima (Rimu)cmacmoB307
CmoCh04G002110Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G002110Cucurbita maxima (Rimu)cmacmoB731
CmoCh04G002110Wild cucumber (PI 183967)cmocpiB747
CmoCh04G002110Cucumber (Chinese Long) v2cmocuB737
CmoCh04G002110Melon (DHL92) v3.5.1cmomeB646
CmoCh04G002110Watermelon (Charleston Gray)cmowcgB676
CmoCh04G002110Watermelon (97103) v1cmowmB673
CmoCh04G002110Cucurbita pepo (Zucchini)cmocpeB674
CmoCh04G002110Cucurbita pepo (Zucchini)cmocpeB692
CmoCh04G002110Bottle gourd (USVL1VR-Ls)cmolsiB655
CmoCh04G002110Cucumber (Gy14) v2cgybcmoB389
CmoCh04G002110Melon (DHL92) v3.6.1cmomedB770
CmoCh04G002110Melon (DHL92) v3.6.1cmomedB798
CmoCh04G002110Silver-seed gourdcarcmoB0369
CmoCh04G002110Silver-seed gourdcarcmoB0924
CmoCh04G002110Silver-seed gourdcarcmoB1247
CmoCh04G002110Cucumber (Chinese Long) v3cmocucB0817