CmoCh04G000120 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G000120
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 73893 .. 74518 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCATGTAATTGAAAACAACATATCCCTTTTGCGTGGCTTATTGTTGCAGATGGATGTGGAGAGATGGGTTAAGCATTTAAGTGCCGCAAGAAGCAAAGCGGATGAGGAGATTCGTTTTGAAGTAGTGGATGGGTTGGTTGTGGAATTAAATTTACTATCTACTGCTTTAAGCATGAGGTATCAAACTGTTTACATTCTGTTCATAATCCTTCTTGCTTCTTCTATCGTAATGCTAACATTCTGTTGCCAAACGAATTTGATGCCAGCGATCCCAAGGAAAATGTATCTCAAGTGGTATCGATATCAAAGAGCGTCTATTCGAGGAGGATGGAGTTGGAGCCTATCTTGAGTGAACTACTACTACTACTACTACATGATGATCCTGAAGTGGAAGTGGATCAGAGGTCGATTGATGATCAAGATTGTGAAGGAGGAAAAGCTGAGGCTGTTTTGGATAAGAAGGGGAAAGGGAAAGGGAAAGGGAATGGGAATGGGAATGGGAATGGGAAAGGGAACGGGAAAGGGAACGGGAATGGGAAAGGGAACGGGAAAGGGAACGGGAATGGGAAAGGGAAAGGGAAGTCAAAGAACAACAAGAGGGGAAAGGGTCGTAGGAGTTGA

mRNA sequence

ATGAAGCATGTAATTGAAAACAACATATCCCTTTTGCGTGGCTTATTGTTGCAGATGGATGTGGAGAGATGGGTTAAGCATTTAAGTGCCGCAAGAAGCAAAGCGGATGAGGAGATTCGTTTTGAAGTAGTGGATGGGTTGGTTGTGGAATTAAATTTACTATCTACTGCTTTAAGCATGAGCGATCCCAAGGAAAATGTATCTCAAGTGGTATCGATATCAAAGAGCGTCTATTCGAGGAGGATGGAGTTGGAGCCTATCTTGAGTGAACTACTACTACTACTACTACATGATGATCCTGAAGTGGAAGTGGATCAGAGGTCGATTGATGATCAAGATTGTGAAGGAGGAAAAGCTGAGGCTGTTTTGGATAAGAAGGGGAAAGGGAAAGGGAAAGGGAATGGGAATGGGAATGGGAATGGGAAAGGGAACGGGAAAGGGAACGGGAATGGGAAAGGGAACGGGAAAGGGAACGGGAATGGGAAAGGGAAAGGGAAGTCAAAGAACAACAAGAGGGGAAAGGGTCGTAGGAGTTGA

Coding sequence (CDS)

ATGAAGCATGTAATTGAAAACAACATATCCCTTTTGCGTGGCTTATTGTTGCAGATGGATGTGGAGAGATGGGTTAAGCATTTAAGTGCCGCAAGAAGCAAAGCGGATGAGGAGATTCGTTTTGAAGTAGTGGATGGGTTGGTTGTGGAATTAAATTTACTATCTACTGCTTTAAGCATGAGCGATCCCAAGGAAAATGTATCTCAAGTGGTATCGATATCAAAGAGCGTCTATTCGAGGAGGATGGAGTTGGAGCCTATCTTGAGTGAACTACTACTACTACTACTACATGATGATCCTGAAGTGGAAGTGGATCAGAGGTCGATTGATGATCAAGATTGTGAAGGAGGAAAAGCTGAGGCTGTTTTGGATAAGAAGGGGAAAGGGAAAGGGAAAGGGAATGGGAATGGGAATGGGAATGGGAAAGGGAACGGGAAAGGGAACGGGAATGGGAAAGGGAACGGGAAAGGGAACGGGAATGGGAAAGGGAAAGGGAAGTCAAAGAACAACAAGAGGGGAAAGGGTCGTAGGAGTTGA

Homology

[Close]

BLAST of CmoCh04G000120 vs. TrEMBL
Match: A0A0A0KMH5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G266320 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-17
Identity = 69/140 (49.29%), Postives = 87/140 (62.14%), Query Frame = 1


Query: 17   LQMDVERWVKHLSAARSKADE-EIRFEVVDGLVVELNLLSTALSMSDPKENVSQVVSISK 76
            ++MDV++WV+HL+AA+SKA E E+  E VDGL+ EL LLSTALSMS P+EN ++V+SISK
Sbjct: 1458 VKMDVDKWVQHLTAAKSKAAEKEVPLEKVDGLLNELCLLSTALSMSKPEENATEVISISK 1517

Query: 77   SVYSRRMELEPILSELLLLLLHDDPEVEVDQRS---------IDDQDC------------ 133
            S+Y RR EL  I S     LL DDPE+EV Q S           + DC            
Sbjct: 1518 SLYGRRTELGSIFSN----LLSDDPEMEVGQMSGIKNAEGDENVNPDCNDESPEECREVE 1577

[Close]

BLAST of CmoCh04G000120 vs. NCBI nr
Match: gi|659120507|ref|XP_008460225.1| (PREDICTED: uncharacterized protein LOC103499108 [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 1.1e-18
Identity = 71/144 (49.31%), Postives = 94/144 (65.28%), Query Frame = 1


Query: 17   LQMDVERWVKHLSAARSKADEEIRFEVVDGLVVELNLLSTALSMSDPKENVSQVVSISKS 76
            ++MDV++W++HL+AA+S  ++EI  E VDGL+ EL+LLSTALSMS P+ENV+QV+SISKS
Sbjct: 2658 VKMDVDKWLQHLTAAKSMGEKEIPLEKVDGLLNELDLLSTALSMSKPEENVTQVISISKS 2717

Query: 77   VYSRRMELEPILSELLLLLLHDDPEVEVDQRS---------IDDQDC-----------EG 136
            +YSRR ELE I ++    LL+DDPE+EV Q S         I + DC           E 
Sbjct: 2718 LYSRRTELESIFTK----LLNDDPEMEVGQMSGIKNAEGDEIVNPDCNDKSPEECRGVEA 2777

[Close]

BLAST of CmoCh04G000120 vs. NCBI nr
Match: gi|700195626|gb|KGN50803.1| (hypothetical protein Csa_5G266320 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 2.0e-17
Identity = 69/140 (49.29%), Postives = 87/140 (62.14%), Query Frame = 1


Query: 17   LQMDVERWVKHLSAARSKADE-EIRFEVVDGLVVELNLLSTALSMSDPKENVSQVVSISK 76
            ++MDV++WV+HL+AA+SKA E E+  E VDGL+ EL LLSTALSMS P+EN ++V+SISK
Sbjct: 1458 VKMDVDKWVQHLTAAKSKAAEKEVPLEKVDGLLNELCLLSTALSMSKPEENATEVISISK 1517

Query: 77   SVYSRRMELEPILSELLLLLLHDDPEVEVDQRS---------IDDQDC------------ 133
            S+Y RR EL  I S     LL DDPE+EV Q S           + DC            
Sbjct: 1518 SLYGRRTELGSIFSN----LLSDDPEMEVGQMSGIKNAEGDENVNPDCNDESPEECREVE 1577

[Close]

BLAST of CmoCh04G000120 vs. NCBI nr
Match: gi|778701798|ref|XP_011655089.1| (PREDICTED: uncharacterized protein LOC105435477 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 2.0e-17
Identity = 69/140 (49.29%), Postives = 87/140 (62.14%), Query Frame = 1


Query: 17   LQMDVERWVKHLSAARSKADE-EIRFEVVDGLVVELNLLSTALSMSDPKENVSQVVSISK 76
            ++MDV++WV+HL+AA+SKA E E+  E VDGL+ EL LLSTALSMS P+EN ++V+SISK
Sbjct: 1461 VKMDVDKWVQHLTAAKSKAAEKEVPLEKVDGLLNELCLLSTALSMSKPEENATEVISISK 1520

Query: 77   SVYSRRMELEPILSELLLLLLHDDPEVEVDQRS---------IDDQDC------------ 133
            S+Y RR EL  I S     LL DDPE+EV Q S           + DC            
Sbjct: 1521 SLYGRRTELGSIFSN----LLSDDPEMEVGQMSGIKNAEGDENVNPDCNDESPEECREVE 1580

The following BLAST results are available for this feature:

BLAST of CmoCh04G000120 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G000120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMH5_CUCSA	1.4e-17	49.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G266320 PE=4 SV=1	[more]

BLAST of CmoCh04G000120 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G000120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120507\|ref\|XP_008460225.1\|	1.1e-18	49.31	PREDICTED: uncharacterized protein LOC103499108 [Cucumis melo]	[more]
gi\|700195626\|gb\|KGN50803.1\|	2.0e-17	49.29	hypothetical protein Csa_5G266320 [Cucumis sativus]	[more]
gi\|778701798\|ref\|XP_011655089.1\|	2.0e-17	49.29	PREDICTED: uncharacterized protein LOC105435477 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G000120.1	CmoCh04G000120.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G000120	Cla97C11G207150	Watermelon (97103) v2	cmowmbB703

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G000120	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G000120	Cucurbita pepo (Zucchini)	cmocpeB674
CmoCh04G000120	Cucumber (Gy14) v2	cgybcmoB641
CmoCh04G000120	Melon (DHL92) v3.6.1	cmomedB731
CmoCh04G000120	Silver-seed gourd	carcmoB0924
CmoCh04G000120	Cucumber (Chinese Long) v3	cmocucB0862
CmoCh04G000120	Wax gourd	cmowgoB0898
CmoCh04G000120	Cucurbita moschata (Rifu)	cmocmoB464
CmoCh04G000120	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G000120	Cucurbita maxima (Rimu)	cmacmoB731
CmoCh04G000120	Wild cucumber (PI 183967)	cmocpiB760
CmoCh04G000120	Wild cucumber (PI 183967)	cmocpiB743
CmoCh04G000120	Cucumber (Chinese Long) v2	cmocuB734
CmoCh04G000120	Cucumber (Chinese Long) v2	cmocuB756
CmoCh04G000120	Melon (DHL92) v3.5.1	cmomeB657
CmoCh04G000120	Watermelon (Charleston Gray)	cmowcgB627
CmoCh04G000120	Watermelon (97103) v1	cmowmB736