CmoCh03G007940 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh03G007940
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr03 : 6491587 .. 6492671 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTCAGTCGCATCGAAACCTTTTTCTTTGGATTTTGAGATCTTCGTTCTTGAATCTCTCATTCATTTCGATGAAGATTTAAGCAGCGATTTTGCTTCCAATCGATCAATGGCTCTTCTCGGCTTCGCAGTCACCAACGAGGTACAATCTCAATTCCCAAATTCGATCTTCTTTTCCATTTCTCCGTCTGCTCGACCTTTTTCCGCTCATTCTCAAATTTAGGAGCTTATTTTGACGAGTTTATTAATGTCTTCTGGATAAAGAGGGTGACCAGTTAGTGATTGGATGGAAGAGGCGTTGTATGTTTCACTTTTACCGATCTCCTATGTAGGTTGCATTTTCTTTTGACGAGTTTTGTTTGGCTAGGATGAAAATCACTTGAACTCCATTACAGGAAGCTATGTATTTTAGTGAGCTGAGTTGAGATGCGATTAACCGTTTGAGACTCAAACAGGTTAGGGATAAAAGTTTGAGTGATTCGCTGCAAACAATGTTAGAAGGATATGACGAGAACTCGAATTTGGGGAGGCTATGATATTTGGGATCCTTTATGCTGCTTCTATATCCTCTTGGTTCCAATGTTGTTCGTACGGCATGGTAATCTTTGACTTAAAAACTCCTTTAACACTTGGTCTTATTTGTCTTAACGCCTTTCCTAGTAGCTTGTTCAGCTTATTTTCACTTCGTTCTAAGAAATATACTAGTGGGAGATGCAAATCTGAATTTTGACGAGAATATGGTTTTAATTGGACTACTCTTATAATGTTATGCCATTATCTACTGGTTTTCATTATGCCTTTTGGCTTGTTTAGTTGCTCTGTAGGGATTGTCTTACCTGTGAATTCCCCTTCAAGGCAATCGAGAAGAAAGATCAAAATGAGCAATAGAAGTGGCTTTTGTATTGGGCAGGTTGGGAAAAAAAAATCTTTTCAGTTCTTTAGCTTTCTTGATTTTTAATTTCAAACAATGGATTATCTTGTATATTGTGTGTCATGGAGAAATATGCAAGCTCTTGGAGGTTTTGCAGGGTTGGCCTAGTTTTCTTTGGGGCATGGGAAAATGCAAAGGAACGTACAATTTTGTGA

mRNA sequence

TTTTCAGTCGCATCGAAACCTTTTTCTTTGGATTTTGAGATCTTCGTTCTTGAATCTCTCATTCATTTCGATGAAGATTTAAGCAGCGATTTTGCTTCCAATCGATCAATGGCTCTTCTCGGCTTCGCAGTCACCAACGAGGTTAGGGATAAAAGTTTGAGTGATTCGCTGCAAACAATGTTAGAAGGATATGACGAGAACTCGAATTTGGGGAGGCTATGATATTTGGGATCCTTTATGCTGCTTCTATATCCTCTTGGTTCCAATGTTGTTCGTACGGCATGTTGCTCTGTAGGGATTGTCTTACCTGTGAATTCCCCTTCAAGGCAATCGAGAAGAAAGATCAAAATGAGCAATAGAAGTGGCTTTTGTATTGGGCAGGTTGGGAAAAAAAAATCTTTTCAGGTTGGCCTAGTTTTCTTTGGGGCATGGGAAAATGCAAAGGAACGTACAATTTTGTGA

Coding sequence (CDS)

ATGCTGCTTCTATATCCTCTTGGTTCCAATGTTGTTCGTACGGCATGTTGCTCTGTAGGGATTGTCTTACCTGTGAATTCCCCTTCAAGGCAATCGAGAAGAAAGATCAAAATGAGCAATAGAAGTGGCTTTTGTATTGGGCAGGTTGGGAAAAAAAAATCTTTTCAGGTTGGCCTAGTTTTCTTTGGGGCATGGGAAAATGCAAAGGAACGTACAATTTTGTGA
Homology
[Close]
BLAST of CmoCh03G007940 vs. TrEMBL
Match: V4SK87_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026788mg PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.6e-06
Identity = 33/48 (68.75%), Postives = 36/48 (75.00%), Query Frame = 1 

Query: 2  LLLYPLGSNVV-RTACCSVGIVLPVNSPSRQSRRKIKMSNRSGFCIGQ 49
          LL  PLGSN++ RTAC SVG+ LPV S  RQ R KIKMSN SG CIGQ
Sbjct: 16 LLFCPLGSNIILRTACSSVGVALPVYS--RQLRGKIKMSNTSGSCIGQ 61

[Close]
BLAST of CmoCh03G007940 vs. NCBI nr
Match: gi|985428485|ref|XP_015389269.1| (PREDICTED: uncharacterized protein LOC102617006 isoform X1 [Citrus sinensis])

HSP 1 Score: 58.5 bits (140), Expect = 5.6e-06
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 1 

Query: 2  LLLYPLGSNVV-RTACCSVGIVLPVNSPSRQSRRKIKMSNRSGFCIGQV 50
          LL  PLGSN++ RTAC SVG+ LPV S  RQ R KIKMSN SG CIGQ+
Sbjct: 16 LLFCPLGSNIILRTACSSVGVALPVYS--RQLRGKIKMSNTSGSCIGQL 62

[Close]
BLAST of CmoCh03G007940 vs. NCBI nr
Match: gi|568820074|ref|XP_006464556.1| (PREDICTED: uncharacterized protein LOC102617006 isoform X3 [Citrus sinensis])

HSP 1 Score: 58.5 bits (140), Expect = 5.6e-06
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 1 

Query: 2  LLLYPLGSNVV-RTACCSVGIVLPVNSPSRQSRRKIKMSNRSGFCIGQV 50
          LL  PLGSN++ RTAC SVG+ LPV S  RQ R KIKMSN SG CIGQ+
Sbjct: 16 LLFCPLGSNIILRTACSSVGVALPVYS--RQLRGKIKMSNTSGSCIGQL 62

[Close]
BLAST of CmoCh03G007940 vs. NCBI nr
Match: gi|985428488|ref|XP_015389328.1| (PREDICTED: uncharacterized protein LOC102617006 isoform X2 [Citrus sinensis])

HSP 1 Score: 58.5 bits (140), Expect = 5.6e-06
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 1 

Query: 2  LLLYPLGSNVV-RTACCSVGIVLPVNSPSRQSRRKIKMSNRSGFCIGQV 50
          LL  PLGSN++ RTAC SVG+ LPV S  RQ R KIKMSN SG CIGQ+
Sbjct: 16 LLFCPLGSNIILRTACSSVGVALPVYS--RQLRGKIKMSNTSGSCIGQL 62

[Close]
BLAST of CmoCh03G007940 vs. NCBI nr
Match: gi|985428492|ref|XP_015389414.1| (PREDICTED: uncharacterized protein LOC102617006 isoform X5 [Citrus sinensis])

HSP 1 Score: 58.5 bits (140), Expect = 5.6e-06
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 1 

Query: 2  LLLYPLGSNVV-RTACCSVGIVLPVNSPSRQSRRKIKMSNRSGFCIGQV 50
          LL  PLGSN++ RTAC SVG+ LPV S  RQ R KIKMSN SG CIGQ+
Sbjct: 16 LLFCPLGSNIILRTACSSVGVALPVYS--RQLRGKIKMSNTSGSCIGQL 62

[Close]
BLAST of CmoCh03G007940 vs. NCBI nr
Match: gi|985428494|ref|XP_015389427.1| (PREDICTED: HVA22-like protein k isoform X6 [Citrus sinensis])

HSP 1 Score: 58.5 bits (140), Expect = 5.6e-06
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 1 

Query: 2  LLLYPLGSNVV-RTACCSVGIVLPVNSPSRQSRRKIKMSNRSGFCIGQV 50
          LL  PLGSN++ RTAC SVG+ LPV S  RQ R KIKMSN SG CIGQ+
Sbjct: 16 LLFCPLGSNIILRTACSSVGVALPVYS--RQLRGKIKMSNTSGSCIGQL 62

The following BLAST results are available for this feature:
BLAST of CmoCh03G007940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh03G007940 vs. TrEMBL
Match NameE-valueIdentityDescription
V4SK87_9ROSI6.6e-0668.75Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026788mg PE=4 SV=1[more]
BLAST of CmoCh03G007940 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh03G007940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|985428485|ref|XP_015389269.1|5.6e-0667.35PREDICTED: uncharacterized protein LOC102617006 isoform X1 [Citrus sinensis][more]
gi|568820074|ref|XP_006464556.1|5.6e-0667.35PREDICTED: uncharacterized protein LOC102617006 isoform X3 [Citrus sinensis][more]
gi|985428488|ref|XP_015389328.1|5.6e-0667.35PREDICTED: uncharacterized protein LOC102617006 isoform X2 [Citrus sinensis][more]
gi|985428492|ref|XP_015389414.1|5.6e-0667.35PREDICTED: uncharacterized protein LOC102617006 isoform X5 [Citrus sinensis][more]
gi|985428494|ref|XP_015389427.1|5.6e-0667.35PREDICTED: HVA22-like protein k isoform X6 [Citrus sinensis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G007940.1CmoCh03G007940.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh03G007940CmaCh03G007660Cucurbita maxima (Rimu)cmacmoB653
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh03G007940Cucurbita maxima (Rimu)cmacmoB727
CmoCh03G007940Cucurbita maxima (Rimu)cmacmoB858
CmoCh03G007940Wild cucumber (PI 183967)cmocpiB655
CmoCh03G007940Wild cucumber (PI 183967)cmocpiB681
CmoCh03G007940Cucumber (Chinese Long) v2cmocuB643
CmoCh03G007940Cucumber (Chinese Long) v2cmocuB670
CmoCh03G007940Melon (DHL92) v3.5.1cmomeB584
CmoCh03G007940Melon (DHL92) v3.5.1cmomeB605
CmoCh03G007940Watermelon (Charleston Gray)cmowcgB575
CmoCh03G007940Watermelon (Charleston Gray)cmowcgB601
CmoCh03G007940Watermelon (97103) v1cmowmB610
CmoCh03G007940Watermelon (97103) v1cmowmB623
CmoCh03G007940Cucurbita pepo (Zucchini)cmocpeB606
CmoCh03G007940Cucurbita pepo (Zucchini)cmocpeB613
CmoCh03G007940Cucurbita pepo (Zucchini)cmocpeB624
CmoCh03G007940Cucurbita pepo (Zucchini)cmocpeB638
CmoCh03G007940Bottle gourd (USVL1VR-Ls)cmolsiB582
CmoCh03G007940Bottle gourd (USVL1VR-Ls)cmolsiB608
CmoCh03G007940Cucumber (Gy14) v2cgybcmoB811
CmoCh03G007940Melon (DHL92) v3.6.1cmomedB671
CmoCh03G007940Melon (DHL92) v3.6.1cmomedB694
CmoCh03G007940Silver-seed gourdcarcmoB0551
CmoCh03G007940Silver-seed gourdcarcmoB1028
CmoCh03G007940Silver-seed gourdcarcmoB1317
CmoCh03G007940Cucumber (Chinese Long) v3cmocucB0766
CmoCh03G007940Cucumber (Chinese Long) v3cmocucB0793
CmoCh03G007940Watermelon (97103) v2cmowmbB642
CmoCh03G007940Watermelon (97103) v2cmowmbB673
CmoCh03G007940Wax gourdcmowgoB0792
CmoCh03G007940Cucurbita moschata (Rifu)cmocmoB144
CmoCh03G007940Cucurbita moschata (Rifu)cmocmoB451
CmoCh03G007940Cucurbita moschata (Rifu)cmocmoB455
CmoCh03G007940Cucumber (Gy14) v1cgycmoB0227