CmoCh03G006500 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G006500
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	50S ribosomal protein L11
Location	Cmo_Chr03 : 5891716 .. 5892183 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCTTGAAAGAGATCTTAACAAGACGACCCGTCGCCGCCACCATCAGGCTCACCGTACCTGCCGGCGGAGCTCGCCCTGCGCCACCGGTGGGTCCGGCGTTGGGTCAGTACCGGCTGAATCTGATGGCTTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAGCCTGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGACAATACCTTTGAGTTCACCGTAAAGTCGCCGTCGGTCACATGGTACCTGAAGAAAGCCGCCGGGATCGAGTCTGGGAGCGGCCGCCCTGGCCATGTGGTCGCCTCTACGCTCACTGTCAAGCACATTTACGATATCGCCAAAGTCAAGCAGTCCGATCCTTTTTGCCAGTACATGCCACTAGAGTCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAGGTTGTTAAGGAATTGGATTAA

mRNA sequence

ATGGCCACCTTGAAAGAGATCTTAACAAGACGACCCGTCGCCGCCACCATCAGGCTCACCGTACCTGCCGGCGGAGCTCGCCCTGCGCCACCGGTGGGTCCGGCGTTGGGTCAGTACCGGCTGAATCTGATGGCTTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAGCCTGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGACAATACCTTTGAGTTCACCGTAAAGTCGCCGTCGGTCACATGGTACCTGAAGAAAGCCGCCGGGATCGAGTCTGGGAGCGGCCGCCCTGGCCATGTGGTCGCCTCTACGCTCACTGTCAAGCACATTTACGATATCGCCAAAGTCAAGCAGTCCGATCCTTTTTGCCAGTACATGCCACTAGAGTCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAGGTTGTTAAGGAATTGGATTAA

Coding sequence (CDS)

ATGGCCACCTTGAAAGAGATCTTAACAAGACGACCCGTCGCCGCCACCATCAGGCTCACCGTACCTGCCGGCGGAGCTCGCCCTGCGCCACCGGTGGGTCCGGCGTTGGGTCAGTACCGGCTGAATCTGATGGCTTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAGCCTGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGACAATACCTTTGAGTTCACCGTAAAGTCGCCGTCGGTCACATGGTACCTGAAGAAAGCCGCCGGGATCGAGTCTGGGAGCGGCCGCCCTGGCCATGTGGTCGCCTCTACGCTCACTGTCAAGCACATTTACGATATCGCCAAAGTCAAGCAGTCCGATCCTTTTTGCCAGTACATGCCACTAGAGTCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAGGTTGTTAAGGAATTGGATTAA

Homology

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BLAST of CmoCh03G006500 vs. Swiss-Prot
Match: RM19_SCHPO (54S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl19 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.0e-33
Identity = 68/135 (50.37%), Postives = 90/135 (66.67%), Query Frame = 1


Query: 17  IRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFE 76
           I+L VPAG A P PP+GPALG   L  + FCK+FNART  + P+TP+   IT     TF 
Sbjct: 9   IKLIVPAGKATPTPPIGPALGARGLKSIDFCKEFNARTAGWMPNTPVPCKITVTPQRTFT 68

Query: 77  FTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESIC 136
           FT+ +P  +W + K   +E GS  P H +   L++KHIY+IAK+K +DP  Q + L S+C
Sbjct: 69  FTIHTPPTSWLISKTLDLEKGSSSPLHDIKGQLSLKHIYEIAKLKSTDPSLQGIELLSLC 128

Query: 137 KSIIGTANSMGIKVV 152
           KS+IGTA SMG+KVV
Sbjct: 129 KSVIGTAKSMGVKVV 143

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BLAST of CmoCh03G006500 vs. Swiss-Prot
Match: RL11_RHORT (50S ribosomal protein L11 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1) GN=rplK PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 6.8e-30
Identity = 66/142 (46.48%), Postives = 94/142 (66.20%), Query Frame = 1


Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70
           + +   I+L VPAG A P+PP+GPALGQ  LN+M FCK FNA TQ  +P  P+ V ITA+
Sbjct: 3   KKIIGYIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAATQGLEPGMPIPVVITAY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKVKQSDPFCQYM 130
            D TF +  K+P +T++LKKAAGI  GS  PG   A T+T++ + DIA+ K  D      
Sbjct: 63  GDRTFTYITKTPPMTYFLKKAAGIGKGSTTPGKGSAGTVTMEQVRDIAEKKMPD--LNSP 122

Query: 131 PLESICKSIIGTANSMGIKVVK 153
            +E+  + ++G+A SMG++VV+
Sbjct: 123 TIEAAVQMVVGSARSMGLQVVE 142

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BLAST of CmoCh03G006500 vs. Swiss-Prot
Match: RM11_HUMAN (39S ribosomal protein L11, mitochondrial OS=Homo sapiens GN=MRPL11 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-29
Identity = 68/148 (45.95%), Postives = 96/148 (64.86%), Query Frame = 1


Query: 10  RRP-VAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTIT 69
           R+P V   IR  V AG A P PP+GP LGQ  +++  FCK+FN RT+  K   P+   I 
Sbjct: 12  RKPEVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKIL 71

Query: 70  AFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKVKQSDP--F 129
              D TFE  +  P+V+++LK AAGIE G+ + G  VA  +T+KH+Y+IA++K  D    
Sbjct: 72  VKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFA 131

Query: 130 CQYMPLESICKSIIGTANSMGIKVVKEL 155
            Q +PL S+ +SIIG+A S+GI+VVK+L
Sbjct: 132 LQDVPLSSVVRSIIGSARSLGIRVVKDL 159

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BLAST of CmoCh03G006500 vs. Swiss-Prot
Match: RM11_DROME (39S ribosomal protein L11, mitochondrial OS=Drosophila melanogaster GN=mRpL11 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-29
Identity = 60/155 (38.71%), Postives = 98/155 (63.23%), Query Frame = 1


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           + +LK+ + R    + ++  +PAG A   PP+GP LGQ  +N+ AFCKDFNA+T + K  
Sbjct: 8   LKSLKKTVERVTHTSKLKTNIPAGMAAAGPPLGPMLGQRAINIAAFCKDFNAKTAEMKEG 67

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKV 120
            P+   I+   D +++  +  P  T++LK+AAGI+ G+  PG  VA  +T+KH+Y+IA +
Sbjct: 68  VPLPCRISVNSDRSYDLAIHHPPATFFLKQAAGIQRGTMTPGKEVAGMITLKHLYEIAAI 127

Query: 121 KQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD 156
           K  DP    + ++ +C+ +I  A + GIKVV+E+D
Sbjct: 128 KIQDPPNVLLTMQQMCEMLISIARTCGIKVVREID 162

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BLAST of CmoCh03G006500 vs. Swiss-Prot
Match: RL11_PARL1 (50S ribosomal protein L11 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplK PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-29
Identity = 67/142 (47.18%), Postives = 91/142 (64.08%), Query Frame = 1


Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70
           + +   I+L VPAG A P+PP+GPALGQ  LN+M FCK FNA TQK +   P+ V ITAF
Sbjct: 3   KKIEGYIKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAATQKMEQGMPIPVVITAF 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKVKQSDPFCQYM 130
            D +F F +K+P  +++LKKAA + SGS  PG   A T+TV    +IA+ K +D      
Sbjct: 63  SDRSFTFAMKTPPASYFLKKAAKVTSGSKTPGRASAGTVTVAQCREIAEAKMAD--LNAN 122

Query: 131 PLESICKSIIGTANSMGIKVVK 153
            L+   K I G+A SMG++VV+
Sbjct: 123 DLDQATKIIAGSARSMGLQVVE 142

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BLAST of CmoCh03G006500 vs. TrEMBL
Match: A0A0A0KWT6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G279840 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 1.2e-78
Identity = 147/155 (94.84%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKP+
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHVVASTL+VKHIY+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDP+CQYMPLESICKSIIGTANSMGIKV+ EL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

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BLAST of CmoCh03G006500 vs. TrEMBL
Match: V4RUW5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026688mg PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.0e-77
Identity = 145/155 (93.55%), Postives = 152/155 (98.06%), Query Frame = 1


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKP+
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKV 120
           TPM+VTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHV AST+T+KHIY+IAKV
Sbjct: 61  TPMSVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKV 120

Query: 121 KQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDP+CQYMPLESICKSIIGTA +MGIKVVKELD
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTAATMGIKVVKELD 155

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BLAST of CmoCh03G006500 vs. TrEMBL
Match: A9P9X1_POPTR (Ribosomal protein L11 OS=Populus trichocarpa GN=POPTR_0007s09480g PE=2 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.3e-77
Identity = 142/155 (91.61%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKV 120
           TPM+VTITAFKDNTFEFTVKSPSVTWYLKKAAG+ESGSGRPGH+ AST+T+KH+Y+IAKV
Sbjct: 61  TPMSVTITAFKDNTFEFTVKSPSVTWYLKKAAGVESGSGRPGHLEASTVTLKHVYEIAKV 120

Query: 121 KQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDP+CQYM LESICKSI+GTAN+MGIKVVK+LD
Sbjct: 121 KQSDPYCQYMSLESICKSIMGTANTMGIKVVKDLD 155

[Close]

BLAST of CmoCh03G006500 vs. TrEMBL
Match: A0A0D2NBV6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G199600 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.3e-77
Identity = 143/155 (92.26%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           M+TLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MSTLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKV 120
           TPM+VTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHVVA+TL+V+HIY+IAK+
Sbjct: 61  TPMSVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVRHIYEIAKI 120

Query: 121 KQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDP+CQYM LESICKSIIGTAN+MGIKVVK+LD
Sbjct: 121 KQSDPYCQYMSLESICKSIIGTANTMGIKVVKDLD 155

[Close]

BLAST of CmoCh03G006500 vs. TrEMBL
Match: B9S6W1_RICCO (50S robosomal protein L11, putative OS=Ricinus communis GN=RCOM_0874950 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 3.0e-77
Identity = 144/155 (92.90%), Postives = 152/155 (98.06%), Query Frame = 1


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHVVAST+T+KH+Y+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTVTLKHVYEIAKV 120

Query: 121 KQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDP+CQYM LESI KS+IGTAN+MGIKVVK+LD
Sbjct: 121 KQSDPYCQYMSLESISKSVIGTANAMGIKVVKDLD 155

[Close]

BLAST of CmoCh03G006500 vs. TAIR10
Match: AT4G35490.1 (AT4G35490.1 mitochondrial ribosomal protein L11)

HSP 1 Score: 273.5 bits (698), Expect = 8.1e-74
Identity = 130/154 (84.42%), Postives = 147/154 (95.45%), Query Frame = 1


Query: 2   ATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDT 61
           A  KEIL RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDT
Sbjct: 3   AAAKEIL-RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDT 62

Query: 62  PMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKVK 121
           PMAVTITAFKDN+FEFTVKSP+V+WY+KKAAG++ GS RPGH+  +TL+V+H+Y+IAKVK
Sbjct: 63  PMAVTITAFKDNSFEFTVKSPTVSWYIKKAAGVDKGSTRPGHLSVTTLSVRHVYEIAKVK 122

Query: 122 QSDPFCQYMPLESICKSIIGTANSMGIKVVKELD 156
           Q+DPFCQYMPLESICKSIIGTANSMGIK+V++L+
Sbjct: 123 QTDPFCQYMPLESICKSIIGTANSMGIKIVQDLE 155

[Close]

BLAST of CmoCh03G006500 vs. TAIR10
Match: AT1G32990.1 (AT1G32990.1 plastid ribosomal protein l11)

HSP 1 Score: 104.8 bits (260), Expect = 5.0e-23
Identity = 61/140 (43.57%), Postives = 80/140 (57.14%), Query Frame = 1


Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70
           + V   I+L + AG A PAPPVGPALG   +N+MAFCKD+NART   K    + V IT F
Sbjct: 72  KKVVGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTAD-KAGYIIPVEITVF 131

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKVKQSDPFCQYM 130
            D +F F +K+P  +  L KAAG+E GS  P       +T+  +  IA  K  D  C   
Sbjct: 132 DDKSFTFILKTPPASVLLLKAAGVEKGSKDPQQDKVGVITIDQLRTIAAEKLPDLNC--T 191

Query: 131 PLESICKSIIGTANSMGIKV 151
            +ES  + I GTA +MGI +
Sbjct: 192 TIESAMRIIAGTAANMGIDI 208

[Close]

BLAST of CmoCh03G006500 vs. TAIR10
Match: AT5G51610.1 (AT5G51610.1 Ribosomal protein L11 family protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.3e-07
Identity = 27/79 (34.18%), Postives = 45/79 (56.96%), Query Frame = 1


Query: 72  DNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKVKQSDPFCQYMP 131
           D +F F +K+P  ++ L KAAG++ GS  P  +    +T+  +  IA+VK  +  C    
Sbjct: 92  DQSFTFILKTPPTSFLLLKAAGVKKGSKDPKQIKVGMITIDQVRKIAEVKLPELNC--TT 151

Query: 132 LESICKSIIGTANSMGIKV 151
           + S  ++I GTA +MGI +
Sbjct: 152 IVSTMRTIAGTAGNMGIDI 168

[Close]

BLAST of CmoCh03G006500 vs. NCBI nr
Match: gi|659097841|ref|XP_008449842.1| (PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis melo])

HSP 1 Score: 300.8 bits (769), Expect = 1.4e-78
Identity = 147/155 (94.84%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHVVASTL+VKHIY+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDP+CQYMPLESICKSIIGTANSMGIKV+ EL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]

BLAST of CmoCh03G006500 vs. NCBI nr
Match: gi|449448846|ref|XP_004142176.1| (PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis sativus])

HSP 1 Score: 300.4 bits (768), Expect = 1.8e-78
Identity = 147/155 (94.84%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKP+
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHVVASTL+VKHIY+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDP+CQYMPLESICKSIIGTANSMGIKV+ EL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]

BLAST of CmoCh03G006500 vs. NCBI nr
Match: gi|567865291|ref|XP_006425268.1| (hypothetical protein CICLE_v10026688mg [Citrus clementina])

HSP 1 Score: 297.4 bits (760), Expect = 1.5e-77
Identity = 145/155 (93.55%), Postives = 152/155 (98.06%), Query Frame = 1


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKP+
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKV 120
           TPM+VTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHV AST+T+KHIY+IAKV
Sbjct: 61  TPMSVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKV 120

Query: 121 KQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDP+CQYMPLESICKSIIGTA +MGIKVVKELD
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTAATMGIKVVKELD 155

[Close]

BLAST of CmoCh03G006500 vs. NCBI nr
Match: gi|823126060|ref|XP_012487400.1| (PREDICTED: 54S ribosomal protein L19, mitochondrial [Gossypium raimondii])

HSP 1 Score: 296.2 bits (757), Expect = 3.3e-77
Identity = 143/155 (92.26%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           M+TLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MSTLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKV 120
           TPM+VTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHVVA+TL+V+HIY+IAK+
Sbjct: 61  TPMSVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVRHIYEIAKI 120

Query: 121 KQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDP+CQYM LESICKSIIGTAN+MGIKVVK+LD
Sbjct: 121 KQSDPYCQYMSLESICKSIIGTANTMGIKVVKDLD 155

[Close]

BLAST of CmoCh03G006500 vs. NCBI nr
Match: gi|566180373|ref|XP_002310723.2| (ribosomal protein L11 [Populus trichocarpa])

HSP 1 Score: 296.2 bits (757), Expect = 3.3e-77
Identity = 142/155 (91.61%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKV 120
           TPM+VTITAFKDNTFEFTVKSPSVTWYLKKAAG+ESGSGRPGH+ AST+T+KH+Y+IAKV
Sbjct: 61  TPMSVTITAFKDNTFEFTVKSPSVTWYLKKAAGVESGSGRPGHLEASTVTLKHVYEIAKV 120

Query: 121 KQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDP+CQYM LESICKSI+GTAN+MGIKVVK+LD
Sbjct: 121 KQSDPYCQYMSLESICKSIMGTANTMGIKVVKDLD 155

The following BLAST results are available for this feature:

BLAST of CmoCh03G006500 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RM19_SCHPO	1.0e-33	50.37	54S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
RL11_RHORT	6.8e-30	46.48	50S ribosomal protein L11 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1....	[more]
RM11_HUMAN	1.5e-29	45.95	39S ribosomal protein L11, mitochondrial OS=Homo sapiens GN=MRPL11 PE=1 SV=1	[more]
RM11_DROME	1.5e-29	38.71	39S ribosomal protein L11, mitochondrial OS=Drosophila melanogaster GN=mRpL11 PE...	[more]
RL11_PARL1	1.5e-29	47.18	50S ribosomal protein L11 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 130...	[more]

BLAST of CmoCh03G006500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWT6_CUCSA	1.2e-78	94.84	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G279840 PE=3 SV=1	[more]
V4RUW5_9ROSI	1.0e-77	93.55	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026688mg PE=3 SV=1	[more]
A9P9X1_POPTR	2.3e-77	91.61	Ribosomal protein L11 OS=Populus trichocarpa GN=POPTR_0007s09480g PE=2 SV=1	[more]
A0A0D2NBV6_GOSRA	2.3e-77	92.26	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G199600 PE=3 SV=1	[more]
B9S6W1_RICCO	3.0e-77	92.90	50S robosomal protein L11, putative OS=Ricinus communis GN=RCOM_0874950 PE=3 SV=...	[more]

BLAST of CmoCh03G006500 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G35490.1	8.1e-74	84.42	mitochondrial ribosomal protein L11	[more]
AT1G32990.1	5.0e-23	43.57	plastid ribosomal protein l11	[more]
AT5G51610.1	2.3e-07	34.18	Ribosomal protein L11 family protein	[more]

BLAST of CmoCh03G006500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659097841\|ref\|XP_008449842.1\|	1.4e-78	94.84	PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis melo]	[more]
gi\|449448846\|ref\|XP_004142176.1\|	1.8e-78	94.84	PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis sativus]	[more]
gi\|567865291\|ref\|XP_006425268.1\|	1.5e-77	93.55	hypothetical protein CICLE_v10026688mg [Citrus clementina]	[more]
gi\|823126060\|ref\|XP_012487400.1\|	3.3e-77	92.26	PREDICTED: 54S ribosomal protein L19, mitochondrial [Gossypium raimondii]	[more]
gi\|566180373\|ref\|XP_002310723.2\|	3.3e-77	91.61	ribosomal protein L11 [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000911	Ribosomal_L11/L12
IPR006519	Ribosomal_L11_bac-typ
IPR020783	Ribosomal_L11_C
IPR020784	Ribosomal_L11_N

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G006500.1	CmoCh03G006500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000911	Ribosomal protein L11/L12	HAMAP	MF_00736	Ribosomal_L11	coord: 13..152 score: 25
IPR000911	Ribosomal protein L11/L12	PANTHER	PTHR11661	60S RIBOSOMAL PROTEIN L12	coord: 5..155 score: 2.0
IPR000911	Ribosomal protein L11/L12	SMART	SM00649	rl11c	coord: 17..151 score: 9.1
IPR006519	Ribosomal protein L11, bacterial-type	TIGRFAMs	TIGR01632	TIGR01632	coord: 13..152 score: 2.7
IPR020783	Ribosomal protein L11, C-terminal	GENE3D	G3DSA:1.10.10.250		coord: 81..151 score: 2.0
IPR020783	Ribosomal protein L11, C-terminal	PFAM	PF00298	Ribosomal_L11	coord: 80..150 score: 5.8
IPR020783	Ribosomal protein L11, C-terminal	unknown	SSF46906	Ribosomal protein L11, C-terminal domain	coord: 76..151 score: 8.37
IPR020784	Ribosomal protein L11, N-terminal	GENE3D	G3DSA:3.30.1550.10		coord: 12..80 score: 3.5
IPR020784	Ribosomal protein L11, N-terminal	PFAM	PF03946	Ribosomal_L11_N	coord: 17..75 score: 1.0
IPR020784	Ribosomal protein L11, N-terminal	unknown	SSF54747	Ribosomal L11/L12e N-terminal domain	coord: 13..80 score: 6.41
None	No IPR available	PRODOM	PD001367		coord: 44..82 score: 3.0
None	No IPR available	PANTHER	PTHR11661:SF1	39S RIBOSOMAL PROTEIN L11, MITOCHONDRIAL	coord: 5..155 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh03G006500	CmaCh03G006210	Cucurbita maxima (Rimu)	cmacmoB653
CmoCh03G006500	CmaCh07G003830	Cucurbita maxima (Rimu)	cmacmoB858
CmoCh03G006500	Cp4.1LG10g10270	Cucurbita pepo (Zucchini)	cmocpeB606
CmoCh03G006500	Cp4.1LG19g08430	Cucurbita pepo (Zucchini)	cmocpeB624
CmoCh03G006500	Carg00536	Silver-seed gourd	carcmoB0551
CmoCh03G006500	Carg07915	Silver-seed gourd	carcmoB0886

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh03G006500	CmoCh07G003770	Cucurbita moschata (Rifu)	cmocmoB455

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh03G006500	Silver-seed gourd	carcmoB0477
CmoCh03G006500	Cucumber (Chinese Long) v3	cmocucB0769
CmoCh03G006500	Cucumber (Chinese Long) v3	cmocucB0793
CmoCh03G006500	Watermelon (97103) v2	cmowmbB645
CmoCh03G006500	Watermelon (97103) v2	cmowmbB642
CmoCh03G006500	Wax gourd	cmowgoB0781
CmoCh03G006500	Cucurbita moschata (Rifu)	cmocmoB417
CmoCh03G006500	Cucumber (Gy14) v1	cgycmoB0042
CmoCh03G006500	Cucumber (Gy14) v1	cgycmoB0892
CmoCh03G006500	Wild cucumber (PI 183967)	cmocpiB658
CmoCh03G006500	Wild cucumber (PI 183967)	cmocpiB681
CmoCh03G006500	Cucumber (Chinese Long) v2	cmocuB646
CmoCh03G006500	Cucumber (Chinese Long) v2	cmocuB670
CmoCh03G006500	Melon (DHL92) v3.5.1	cmomeB595
CmoCh03G006500	Melon (DHL92) v3.5.1	cmomeB605
CmoCh03G006500	Watermelon (Charleston Gray)	cmowcgB569
CmoCh03G006500	Watermelon (Charleston Gray)	cmowcgB575
CmoCh03G006500	Watermelon (97103) v1	cmowmB608
CmoCh03G006500	Watermelon (97103) v1	cmowmB623
CmoCh03G006500	Cucurbita pepo (Zucchini)	cmocpeB608
CmoCh03G006500	Cucurbita pepo (Zucchini)	cmocpeB611
CmoCh03G006500	Bottle gourd (USVL1VR-Ls)	cmolsiB582
CmoCh03G006500	Bottle gourd (USVL1VR-Ls)	cmolsiB605
CmoCh03G006500	Cucumber (Gy14) v2	cgybcmoB380
CmoCh03G006500	Cucumber (Gy14) v2	cgybcmoB811
CmoCh03G006500	Melon (DHL92) v3.6.1	cmomedB682
CmoCh03G006500	Melon (DHL92) v3.6.1	cmomedB694