Carg00536 (gene) Silver-seed gourd

Overview
NameCarg00536
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description50S ribosomal protein L11
LocationCucurbita_argyrosperma_scaffold_014 : 225091 .. 225558 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACCTTGAAAGAGATCTTAACAAGACGACCCGTCGCCGCCACCATCAGGCTCACCGTACCTGCCGGCGGAGCTCGCCCTGCGCCACCGGTGGGTCCGGCGTTGGGTCAGTACCGGCTGAATCTGATGGCTTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAGCCTGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGATAATACCTTTGAGTTCACCGTAAAGTCGCCGTCGGTCACATGGTACCTGAAGAAAGCCGCCGGGATCGAGTCTGGGAGCAGCCGCCCTGGCCATGTGGTCGCCTCTACGCTCACTGTCAAGCACATTTACGATATCGCCAAAGTCAAGCAGTCCGATCCTTATTGCCAGTACATGCCACTAGAGTCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAGGTTGTTAAGGAATTGGATTAA

mRNA sequence

ATGGCCACCTTGAAAGAGATCTTAACAAGACGACCCGTCGCCGCCACCATCAGGCTCACCGTACCTGCCGGCGGAGCTCGCCCTGCGCCACCGGTGGGTCCGGCGTTGGGTCAGTACCGGCTGAATCTGATGGCTTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAGCCTGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGATAATACCTTTGAGTTCACCGTAAAGTCGCCGTCGGTCACATGGTACCTGAAGAAAGCCGCCGGGATCGAGTCTGGGAGCAGCCGCCCTGGCCATGTGGTCGCCTCTACGCTCACTGTCAAGCACATTTACGATATCGCCAAAGTCAAGCAGTCCGATCCTTATTGCCAGTACATGCCACTAGAGTCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAGGTTGTTAAGGAATTGGATTAA

Coding sequence (CDS)

ATGGCCACCTTGAAAGAGATCTTAACAAGACGACCCGTCGCCGCCACCATCAGGCTCACCGTACCTGCCGGCGGAGCTCGCCCTGCGCCACCGGTGGGTCCGGCGTTGGGTCAGTACCGGCTGAATCTGATGGCTTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAGCCTGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGATAATACCTTTGAGTTCACCGTAAAGTCGCCGTCGGTCACATGGTACCTGAAGAAAGCCGCCGGGATCGAGTCTGGGAGCAGCCGCCCTGGCCATGTGGTCGCCTCTACGCTCACTGTCAAGCACATTTACGATATCGCCAAAGTCAAGCAGTCCGATCCTTATTGCCAGTACATGCCACTAGAGTCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAGGTTGTTAAGGAATTGGATTAA

Protein sequence

MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKVKQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD
Homology
[Close]
BLAST of Carg00536 vs. NCBI nr
Match: XP_022977323.1 (54S ribosomal protein L19, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 309.7 bits (792), Expect = 5.7e-81
Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHVVASTLT+KHIYDIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]
BLAST of Carg00536 vs. NCBI nr
Match: XP_022950615.1 (54S ribosomal protein L19, mitochondrial-like [Cucurbita moschata] >XP_023544347.1 54S ribosomal protein L19, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 309.3 bits (791), Expect = 7.4e-81
Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHVVASTLTVKHIYDIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDP+CQYMPLESICKSIIGTANSMGIKVVKELD
Sbjct: 121 KQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]
BLAST of Carg00536 vs. NCBI nr
Match: XP_022132985.1 (54S ribosomal protein L19, mitochondrial [Momordica charantia])

HSP 1 Score: 305.8 bits (782), Expect = 8.2e-80
Identity = 150/155 (96.77%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGI+SGSSRPGHVVASTL++KHIY+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIDSGSSRPGHVVASTLSLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]
BLAST of Carg00536 vs. NCBI nr
Match: XP_008449842.1 (PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis melo])

HSP 1 Score: 303.5 bits (776), Expect = 4.1e-79
Identity = 149/155 (96.13%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTL+VKHIY+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKV+ EL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of Carg00536 vs. NCBI nr
Match: XP_004142176.1 (PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis sativus] >KGN54055.1 hypothetical protein Csa_4G279840 [Cucumis sativus])

HSP 1 Score: 303.1 bits (775), Expect = 5.3e-79
Identity = 149/155 (96.13%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKP+
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTL+VKHIY+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKV+ EL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of Carg00536 vs. TAIR10
Match: AT4G35490.1 (mitochondrial ribosomal protein L11)

HSP 1 Score: 272.7 bits (696), Expect = 1.4e-73
Identity = 129/154 (83.77%), Postives = 148/154 (96.10%), Query Frame = 0 

Query: 2   ATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDT 61
           A  KEIL RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDT
Sbjct: 3   AAAKEIL-RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDT 62

Query: 62  PMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKVK 121
           PMAVTITAFKDN+FEFTVKSP+V+WY+KKAAG++ GS+RPGH+  +TL+V+H+Y+IAKVK
Sbjct: 63  PMAVTITAFKDNSFEFTVKSPTVSWYIKKAAGVDKGSTRPGHLSVTTLSVRHVYEIAKVK 122

Query: 122 QSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           Q+DP+CQYMPLESICKSIIGTANSMGIK+V++L+
Sbjct: 123 QTDPFCQYMPLESICKSIIGTANSMGIKIVQDLE 155

[Close]
BLAST of Carg00536 vs. TAIR10
Match: AT1G32990.1 (plastid ribosomal protein l11)

HSP 1 Score: 105.5 bits (262), Expect = 2.9e-23
Identity = 61/140 (43.57%), Postives = 80/140 (57.14%), Query Frame = 0 

Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70
           + V   I+L + AG A PAPPVGPALG   +N+MAFCKD+NART   K    + V IT F
Sbjct: 72  KKVVGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTAD-KAGYIIPVEITVF 131

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKVKQSDPYCQYM 130
            D +F F +K+P  +  L KAAG+E GS  P       +T+  +  IA  K  D  C   
Sbjct: 132 DDKSFTFILKTPPASVLLLKAAGVEKGSKDPQQDKVGVITIDQLRTIAAEKLPDLNC--T 191

Query: 131 PLESICKSIIGTANSMGIKV 151
            +ES  + I GTA +MGI +
Sbjct: 192 TIESAMRIIAGTAANMGIDI 208

[Close]
BLAST of Carg00536 vs. TAIR10
Match: AT5G51610.1 (Ribosomal protein L11 family protein)

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-07
Identity = 27/79 (34.18%), Postives = 45/79 (56.96%), Query Frame = 0 

Query: 72  DNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKVKQSDPYCQYMP 131
           D +F F +K+P  ++ L KAAG++ GS  P  +    +T+  +  IA+VK  +  C    
Sbjct: 92  DQSFTFILKTPPTSFLLLKAAGVKKGSKDPKQIKVGMITIDQVRKIAEVKLPELNC--TT 151

Query: 132 LESICKSIIGTANSMGIKV 151
           + S  ++I GTA +MGI +
Sbjct: 152 IVSTMRTIAGTAGNMGIDI 168

[Close]
BLAST of Carg00536 vs. Swiss-Prot
Match: sp|Q9UTK2|RM19_SCHPO (54S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl19 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.0e-34
Identity = 69/135 (51.11%), Postives = 91/135 (67.41%), Query Frame = 0 

Query: 17  IRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFE 76
           I+L VPAG A P PP+GPALG   L  + FCK+FNART  + P+TP+   IT     TF 
Sbjct: 9   IKLIVPAGKATPTPPIGPALGARGLKSIDFCKEFNARTAGWMPNTPVPCKITVTPQRTFT 68

Query: 77  FTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKVKQSDPYCQYMPLESIC 136
           FT+ +P  +W + K   +E GSS P H +   L++KHIY+IAK+K +DP  Q + L S+C
Sbjct: 69  FTIHTPPTSWLISKTLDLEKGSSSPLHDIKGQLSLKHIYEIAKLKSTDPSLQGIELLSLC 128

Query: 137 KSIIGTANSMGIKVV 152
           KS+IGTA SMG+KVV
Sbjct: 129 KSVIGTAKSMGVKVV 143

[Close]
BLAST of Carg00536 vs. Swiss-Prot
Match: sp|Q2RQU9|RL11_RHORT (50S ribosomal protein L11 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1) OX=269796 GN=rplK PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.0e-30
Identity = 66/142 (46.48%), Postives = 95/142 (66.90%), Query Frame = 0 

Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70
           + +   I+L VPAG A P+PP+GPALGQ  LN+M FCK FNA TQ  +P  P+ V ITA+
Sbjct: 3   KKIIGYIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAATQGLEPGMPIPVVITAY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKVKQSDPYCQYM 130
            D TF +  K+P +T++LKKAAGI  GS+ PG   A T+T++ + DIA+ K  D      
Sbjct: 63  GDRTFTYITKTPPMTYFLKKAAGIGKGSTTPGKGSAGTVTMEQVRDIAEKKMPD--LNSP 122

Query: 131 PLESICKSIIGTANSMGIKVVK 153
            +E+  + ++G+A SMG++VV+
Sbjct: 123 TIEAAVQMVVGSARSMGLQVVE 142

[Close]
BLAST of Carg00536 vs. Swiss-Prot
Match: sp|Q9VFJ2|RM11_DROME (39S ribosomal protein L11, mitochondrial OS=Drosophila melanogaster OX=7227 GN=mRpL11 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 9.0e-30
Identity = 60/155 (38.71%), Postives = 98/155 (63.23%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           + +LK+ + R    + ++  +PAG A   PP+GP LGQ  +N+ AFCKDFNA+T + K  
Sbjct: 8   LKSLKKTVERVTHTSKLKTNIPAGMAAAGPPLGPMLGQRAINIAAFCKDFNAKTAEMKEG 67

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120
            P+   I+   D +++  +  P  T++LK+AAGI+ G+  PG  VA  +T+KH+Y+IA +
Sbjct: 68  VPLPCRISVNSDRSYDLAIHHPPATFFLKQAAGIQRGTMTPGKEVAGMITLKHLYEIAAI 127

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           K  DP    + ++ +C+ +I  A + GIKVV+E+D
Sbjct: 128 KIQDPPNVLLTMQQMCEMLISIARTCGIKVVREID 162

[Close]
BLAST of Carg00536 vs. Swiss-Prot
Match: sp|A7HWQ0|RL11_PARL1 (50S ribosomal protein L11 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) OX=402881 GN=rplK PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-29
Identity = 67/142 (47.18%), Postives = 91/142 (64.08%), Query Frame = 0 

Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70
           + +   I+L VPAG A P+PP+GPALGQ  LN+M FCK FNA TQK +   P+ V ITAF
Sbjct: 3   KKIEGYIKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAATQKMEQGMPIPVVITAF 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKVKQSDPYCQYM 130
            D +F F +K+P  +++LKKAA + SGS  PG   A T+TV    +IA+ K +D      
Sbjct: 63  SDRSFTFAMKTPPASYFLKKAAKVTSGSKTPGRASAGTVTVAQCREIAEAKMAD--LNAN 122

Query: 131 PLESICKSIIGTANSMGIKVVK 153
            L+   K I G+A SMG++VV+
Sbjct: 123 DLDQATKIIAGSARSMGLQVVE 142

[Close]
BLAST of Carg00536 vs. Swiss-Prot
Match: sp|O67758|RL11_AQUAE (50S ribosomal protein L11 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=rplK PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-29
Identity = 66/140 (47.14%), Postives = 94/140 (67.14%), Query Frame = 0 

Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70
           + V ATI L +PA  A PAPPVGPALGQ+ +N+M F K FNA ++ Y+P T + V IT +
Sbjct: 3   KKVVATIELMLPAQQASPAPPVGPALGQHGVNIMEFVKQFNAASRDYEPGTILPVVITVY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKVKQSDPYCQYM 130
           +D +F F +K+P V++ LKKAAG+E GSS P  V    +TVK + +IAK+K  D      
Sbjct: 63  QDRSFTFIMKTPPVSYLLKKAAGVEKGSSDPKRVKVGKITVKQLEEIAKMKMKD--MNTR 122

Query: 131 PLESICKSIIGTANSMGIKV 151
            L++  +++ GTA SMGI++
Sbjct: 123 DLKAAMRTVAGTAKSMGIEI 140

[Close]
BLAST of Carg00536 vs. TrEMBL
Match: tr|A0A1S3BMZ5|A0A1S3BMZ5_CUCME (54S ribosomal protein L19, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491602 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 2.7e-79
Identity = 149/155 (96.13%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTL+VKHIY+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKV+ EL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of Carg00536 vs. TrEMBL
Match: tr|A0A0A0KWT6|A0A0A0KWT6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G279840 PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 3.5e-79
Identity = 149/155 (96.13%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKP+
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTL+VKHIY+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKV+ EL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of Carg00536 vs. TrEMBL
Match: tr|V4RUW5|V4RUW5_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026688mg PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 3.0e-78
Identity = 147/155 (94.84%), Postives = 153/155 (98.71%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKP+
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120
           TPM+VTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHV AST+T+KHIY+IAKV
Sbjct: 61  TPMSVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDPYCQYMPLESICKSIIGTA +MGIKVVKELD
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTAATMGIKVVKELD 155

[Close]
BLAST of Carg00536 vs. TrEMBL
Match: tr|A0A2H5Q4A7|A0A2H5Q4A7_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_194350 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 3.0e-78
Identity = 147/155 (94.84%), Postives = 153/155 (98.71%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKP+
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120
           TPM+VTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHV AST+T+KHIY+IAKV
Sbjct: 61  TPMSVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDPYCQYMPLESICKSIIGTA +MGIKVVKELD
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTAATMGIKVVKELD 155

[Close]
BLAST of Carg00536 vs. TrEMBL
Match: tr|A0A0D2NBV6|A0A0D2NBV6_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G199600 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 6.6e-78
Identity = 145/155 (93.55%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           M+TLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MSTLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120
           TPM+VTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVA+TL+V+HIY+IAK+
Sbjct: 61  TPMSVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVRHIYEIAKI 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDPYCQYM LESICKSIIGTAN+MGIKVVK+LD
Sbjct: 121 KQSDPYCQYMSLESICKSIIGTANTMGIKVVKDLD 155

The following BLAST results are available for this feature:
BLAST of Carg00536 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022977323.15.7e-8198.7154S ribosomal protein L19, mitochondrial-like [Cucurbita maxima][more]
XP_022950615.17.4e-8198.7154S ribosomal protein L19, mitochondrial-like [Cucurbita moschata] >XP_023544347... [more]
XP_022132985.18.2e-8096.7754S ribosomal protein L19, mitochondrial [Momordica charantia][more]
XP_008449842.14.1e-7996.13PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis melo][more]
XP_004142176.15.3e-7996.13PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis sativus] >KGN54055.... [more]
BLAST of Carg00536 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G35490.11.4e-7383.77mitochondrial ribosomal protein L11[more]
AT1G32990.12.9e-2343.57plastid ribosomal protein l11[more]
AT5G51610.11.3e-0734.18Ribosomal protein L11 family protein[more]
BLAST of Carg00536 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9UTK2|RM19_SCHPO6.0e-3451.1154S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 97... [more]
sp|Q2RQU9|RL11_RHORT4.0e-3046.4850S ribosomal protein L11 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.... [more]
sp|Q9VFJ2|RM11_DROME9.0e-3038.7139S ribosomal protein L11, mitochondrial OS=Drosophila melanogaster OX=7227 GN=m... [more]
sp|A7HWQ0|RL11_PARL11.2e-2947.1850S ribosomal protein L11 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 130... [more]
sp|O67758|RL11_AQUAE1.5e-2947.1450S ribosomal protein L11 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=rplK PE=... [more]
BLAST of Carg00536 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BMZ5|A0A1S3BMZ5_CUCME2.7e-7996.1354S ribosomal protein L19, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491602... [more]
tr|A0A0A0KWT6|A0A0A0KWT6_CUCSA3.5e-7996.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G279840 PE=3 SV=1[more]
tr|V4RUW5|V4RUW5_9ROSI3.0e-7894.84Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026688mg PE=3 ... [more]
tr|A0A2H5Q4A7|A0A2H5Q4A7_CITUN3.0e-7894.84Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_194350 PE=3 SV=1[more]
tr|A0A0D2NBV6|A0A0D2NBV6_GOSRA6.6e-7893.55Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G199600 PE=3 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR036769Ribosomal_L11_C_sf
IPR006519Ribosomal_L11_bac-typ
IPR036796Ribosomal_L11/L12_N_sf
IPR020784Ribosomal_L11_N
IPR020783Ribosomal_L11_C
IPR000911Ribosomal_L11/L12
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00536-RACarg00536-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000911Ribosomal protein L11/L12SMARTSM00649rl11ccoord: 17..151
e-value: 1.1E-70
score: 250.8
IPR000911Ribosomal protein L11/L12PANTHERPTHR1166160S RIBOSOMAL PROTEIN L12coord: 11..154
IPR000911Ribosomal protein L11/L12HAMAPMF_00736Ribosomal_L11coord: 13..152
score: 25.736
IPR000911Ribosomal protein L11/L12CDDcd00349Ribosomal_L11coord: 17..150
e-value: 6.39718E-63
score: 191.125
IPR020783Ribosomal protein L11, C-terminalPFAMPF00298Ribosomal_L11coord: 80..150
e-value: 2.7E-26
score: 91.8
IPR020784Ribosomal protein L11, N-terminalPFAMPF03946Ribosomal_L11_Ncoord: 17..75
e-value: 8.8E-23
score: 79.7
IPR036796Ribosomal protein L11/L12, N-terminal domain superfamilyGENE3DG3DSA:3.30.1550.10coord: 11..80
e-value: 1.9E-29
score: 103.2
IPR036796Ribosomal protein L11/L12, N-terminal domain superfamilySUPERFAMILYSSF54747Ribosomal L11/L12e N-terminal domaincoord: 13..80
IPR006519Ribosomal protein L11, bacterial-typeTIGRFAMTIGR01632TIGR01632coord: 13..152
e-value: 1.6E-55
score: 184.9
IPR036769Ribosomal protein L11, C-terminal domain superfamilyGENE3DG3DSA:1.10.10.250coord: 81..152
e-value: 8.6E-31
score: 107.8
IPR036769Ribosomal protein L11, C-terminal domain superfamilySUPERFAMILYSSF46906Ribosomal protein L11, C-terminal domaincoord: 76..151
NoneNo IPR availablePANTHERPTHR11661:SF139S RIBOSOMAL PROTEIN L11, MITOCHONDRIALcoord: 11..154
NoneNo IPR availablePRODOMPD001367coord: 44..82
e-value: 3.0E-16
score: 204.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg00536CmaCh03G006210Cucurbita maxima (Rimu)carcmaB0567
Carg00536CmaCh07G003830Cucurbita maxima (Rimu)carcmaB0571
Carg00536CmoCh03G006500Cucurbita moschata (Rifu)carcmoB0551
Carg00536CmoCh07G003770Cucurbita moschata (Rifu)carcmoB0554
Carg00536Cp4.1LG10g10270Cucurbita pepo (Zucchini)carcpeB0554
Carg00536Cp4.1LG19g08430Cucurbita pepo (Zucchini)carcpeB0563
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg00536Carg07915Silver-seed gourdcarcarB425
The following block(s) are covering this gene:
GeneOrganismBlock
Carg00536Wax gourdcarwgoB0488
Carg00536Melon (DHL92) v3.6.1carmedB0414
Carg00536Silver-seed gourdcarcarB189
Carg00536Silver-seed gourdcarcarB370
Carg00536Cucumber (Gy14) v2carcgybB0413
Carg00536Cucumber (Gy14) v2carcgybB0418
Carg00536Cucumber (Gy14) v1carcgyB0466
Carg00536Cucumber (Gy14) v1carcgyB0472
Carg00536Cucurbita maxima (Rimu)carcmaB0564
Carg00536Cucurbita moschata (Rifu)carcmoB0549
Carg00536Cucurbita pepo (Zucchini)carcpeB0561
Carg00536Cucurbita pepo (Zucchini)carcpeB0575
Carg00536Wild cucumber (PI 183967)carcpiB0441
Carg00536Wild cucumber (PI 183967)carcpiB0446
Carg00536Cucumber (Chinese Long) v2carcuB0441
Carg00536Cucumber (Chinese Long) v3carcucB0438
Carg00536Cucumber (Chinese Long) v3carcucB0442
Carg00536Bottle gourd (USVL1VR-Ls)carlsiB364
Carg00536Bottle gourd (USVL1VR-Ls)carlsiB368
Carg00536Melon (DHL92) v3.5.1carmeB0410
Carg00536Melon (DHL92) v3.5.1carmeB0414
Carg00536Melon (DHL92) v3.6.1carmedB0418
Carg00536Watermelon (Charleston Gray)carwcgB0395
Carg00536Watermelon (Charleston Gray)carwcgB0397
Carg00536Watermelon (97103) v1carwmB0398
Carg00536Watermelon (97103) v1carwmB0407
Carg00536Watermelon (97103) v2carwmbB0426
Carg00536Watermelon (97103) v2carwmbB0427