CmoCh03G001240 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G001240
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ubiquitin carboxyl-terminal hydrolase family protein
Location	Cmo_Chr03 : 1734882 .. 1736464 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGCTTCTTCTTTTCAACCCTAATTCTTCCGTCGCCTTACCTGAGCCCTAATCCTTTTCTGCACCTTCAATGCCGTCGAATTGCGAAGGTTCGCCTCAAATGGGTCAAGAATCGGAGTCTCGATCACATCATCGACACGGAGACCGATTTGAAGGCCGCTTCCCTCCTCAAGGACGCCATTAACCGCTCTTCCACTGGCTTCATTACTGCTAAATCCATCGCCGATTGCCCAAAGCTGCTCGGCCTCACCATCCCTGTTCTTCGATTCATCCGGAGGTATCCAACTCTCTTTCACGAATTTCCTCATTCTCGTTACGCTAATTTGCCTTGCTTTCGTTTGACGGATACCGCGCTGCTTTTAGATCAGCAACAGAGTAGTATTCACCAAATTCATGAGAGCGACACTGTCGAAAGGCTTTGTAGAGTGCTTATGATGATGAAAAATAGGGCTATTCCTCTTCAGTCGTTGCGTCCTTTAGAATGGGATCTAGGTCTTCCATGTGGTTTTGAGAGGTCCTTGATTCCCAAGTATCCGGATCATTTTCGATTAGTGAAGGCCTCGAATGGGGATTGGTGTCTGCGGCTTATGGAATGGCGCGAGGAATTTGCAGTTTCAGCCTTGCAAAGGAGCAATGAGAGCTCTGAACTGGGAGATGCGTATAGGCAATTCAAGAGGGGGCGTACCACATTGGCCTTTCCTATGAGTTTTCCGAGGGGATATGGGGCACAAAAGAAGGTAAAAGCTTGGATGGAAGAGTTTCAGAAGTTACCTTACATTTCTCCATATGAGAGTTGCAGGCAAATTGACCCCAACAGTGATCTCATGGAGAAACGAGTTGTTGGGGTTCTTCATGAGCTTTTGAGTCTCACTCTTCACAAGAAAACTAAAAGAAACTACTTGAGAAGCTTGAGAGAGGAATTGAATCTTCCCCATAAGTTCACTCGAATCTTCACCCGTTATCCCGGAATCTTCTATCTGTCTTTGAAGTGTAAGACCACGACTGTTTCTCTTAGGGAAGGGTATCAGCGAGGAAAGCTAGTGAACCCACATCCTCTGACACGTCTAAGGGAAAAGTTTTATCATGTCATGAAGACTGGTCTGTTTTACCGGGGGAAAGGTGCTGCATTGATAGAAAAGGAGGGCATTCTGCTTAATAATACAGCCGAGGAGACGGTGGAGAATGGTTTGGATGTTGAATCAGATGAGACGGGTGATGATGAATGCTTAGAGGACGAGAACTCGCAGGCAGAGGATTCAGATTCAGATTAATGGAGTCTGATAAGTGGATCCTCCCTTCGCTAGTTGCCAAAAGAGAGGGACAAAAATCAAGCCTCCTATGCGTATATATGCGAAATGTGAGTTTACCCTTTTCCTAGTTATTCCTTCATTAGTTTCGTTCATCACTTGTCTTGGAGGAACTTAAAGTATTGGGAAATTAGGGAGCAATTGATTTGATTGCGATTTAGACGGATTGAGTGATATCTTTTGTTTTGCTTGCAGTTTTATTGGCTGTTAACTCCATTCGAGGGATCAACATTGTCCCATGCAAAGCAATGCTTTATAGTTTATGCGATTAA

mRNA sequence

ATGAAGAGCTTCTTCTTTTCAACCCTAATTCTTCCGTCGCCTTACCTGAGCCCTAATCCTTTTCTGCACCTTCAATGCCGTCGAATTGCGAAGGTTCGCCTCAAATGGGTCAAGAATCGGAGTCTCGATCACATCATCGACACGGAGACCGATTTGAAGGCCGCTTCCCTCCTCAAGGACGCCATTAACCGCTCTTCCACTGGCTTCATTACTGCTAAATCCATCGCCGATTGCCCAAAGCTGCTCGGCCTCACCATCCCTGTTCTTCGATTCATCCGGAGGTATCCAACTCTCTTTCACGAATTTCCTCATTCTCGTTACGCTAATTTGCCTTGCTTTCGTTTGACGGATACCGCGCTGCTTTTAGATCAGCAACAGAGTAGTATTCACCAAATTCATGAGAGCGACACTGTCGAAAGGCTTTGTAGAGTGCTTATGATGATGAAAAATAGGGCTATTCCTCTTCAGTCGTTGCGTCCTTTAGAATGGGATCTAGGTCTTCCATGTGGTTTTGAGAGGTCCTTGATTCCCAAGTATCCGGATCATTTTCGATTAGTGAAGGCCTCGAATGGGGATTGGTGTCTGCGGCTTATGGAATGGCGCGAGGAATTTGCAGTTTCAGCCTTGCAAAGGAGCAATGAGAGCTCTGAACTGGGAGATGCGTATAGGCAATTCAAGAGGGGGCGTACCACATTGGCCTTTCCTATGAGTTTTCCGAGGGGATATGGGGCACAAAAGAAGGTAAAAGCTTGGATGGAAGAGTTTCAGAAGTTACCTTACATTTCTCCATATGAGAGTTGCAGGCAAATTGACCCCAACAGTGATCTCATGGAGAAACGAGTTGTTGGGGTTCTTCATGAGCTTTTGAGTCTCACTCTTCACAAGAAAACTAAAAGAAACTACTTGAGAAGCTTGAGAGAGGAATTGAATCTTCCCCATAAGTTCACTCGAATCTTCACCCGTTATCCCGGAATCTTCTATCTGTCTTTGAAGTGTAAGACCACGACTGTTTCTCTTAGGGAAGGGTATCAGCGAGGAAAGCTAGTGAACCCACATCCTCTGACACGTCTAAGGGAAAAGTTTTATCATGTCATGAAGACTGGTCTGTTTTACCGGGGGAAAGGTGCTGCATTGATAGAAAAGGAGGGCATTCTGCTTAATAATACAGCCGAGGAGACGGTGGAGAATGGTTTGGATGTTGAATCAGATGAGACGGTTTTATTGGCTGTTAACTCCATTCGAGGGATCAACATTGTCCCATGCAAAGCAATGCTTTATAGTTTATGCGATTAA

Coding sequence (CDS)

ATGAAGAGCTTCTTCTTTTCAACCCTAATTCTTCCGTCGCCTTACCTGAGCCCTAATCCTTTTCTGCACCTTCAATGCCGTCGAATTGCGAAGGTTCGCCTCAAATGGGTCAAGAATCGGAGTCTCGATCACATCATCGACACGGAGACCGATTTGAAGGCCGCTTCCCTCCTCAAGGACGCCATTAACCGCTCTTCCACTGGCTTCATTACTGCTAAATCCATCGCCGATTGCCCAAAGCTGCTCGGCCTCACCATCCCTGTTCTTCGATTCATCCGGAGGTATCCAACTCTCTTTCACGAATTTCCTCATTCTCGTTACGCTAATTTGCCTTGCTTTCGTTTGACGGATACCGCGCTGCTTTTAGATCAGCAACAGAGTAGTATTCACCAAATTCATGAGAGCGACACTGTCGAAAGGCTTTGTAGAGTGCTTATGATGATGAAAAATAGGGCTATTCCTCTTCAGTCGTTGCGTCCTTTAGAATGGGATCTAGGTCTTCCATGTGGTTTTGAGAGGTCCTTGATTCCCAAGTATCCGGATCATTTTCGATTAGTGAAGGCCTCGAATGGGGATTGGTGTCTGCGGCTTATGGAATGGCGCGAGGAATTTGCAGTTTCAGCCTTGCAAAGGAGCAATGAGAGCTCTGAACTGGGAGATGCGTATAGGCAATTCAAGAGGGGGCGTACCACATTGGCCTTTCCTATGAGTTTTCCGAGGGGATATGGGGCACAAAAGAAGGTAAAAGCTTGGATGGAAGAGTTTCAGAAGTTACCTTACATTTCTCCATATGAGAGTTGCAGGCAAATTGACCCCAACAGTGATCTCATGGAGAAACGAGTTGTTGGGGTTCTTCATGAGCTTTTGAGTCTCACTCTTCACAAGAAAACTAAAAGAAACTACTTGAGAAGCTTGAGAGAGGAATTGAATCTTCCCCATAAGTTCACTCGAATCTTCACCCGTTATCCCGGAATCTTCTATCTGTCTTTGAAGTGTAAGACCACGACTGTTTCTCTTAGGGAAGGGTATCAGCGAGGAAAGCTAGTGAACCCACATCCTCTGACACGTCTAAGGGAAAAGTTTTATCATGTCATGAAGACTGGTCTGTTTTACCGGGGGAAAGGTGCTGCATTGATAGAAAAGGAGGGCATTCTGCTTAATAATACAGCCGAGGAGACGGTGGAGAATGGTTTGGATGTTGAATCAGATGAGACGGTTTTATTGGCTGTTAACTCCATTCGAGGGATCAACATTGTCCCATGCAAAGCAATGCTTTATAGTTTATGCGATTAA

Homology

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BLAST of CmoCh03G001240 vs. Swiss-Prot
Match: RPD1_ARATH (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.2e-28
Identity = 93/282 (32.98%), Postives = 143/282 (50.71%), Query Frame = 1


Query: 91  FIRRYPTLFHEFPHSRYANLPCFRLTDTAL--LLDQQQSSIHQIHESDTVERLCRVLMMM 150
           F+ ++P +F  + H     L C RLT  AL  +  + ++ + QI   D V RL +++MM 
Sbjct: 104 FLLKFPHVFEIYEHPVQRILYC-RLTRKALDQIRHEHEAVLDQI--PDAVTRLRKLVMMS 163

Query: 151 KNRAIPLQSLRPLEWDLGLPCGFERSLIPKYPDHFRLVKASNG-DWCLRLMEWREEFAVS 210
               I L+ +R    + GLP  FE S+I K+P  FRL+      D  + ++E     ++ 
Sbjct: 164 NTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIVEKDPNLSIC 223

Query: 211 ALQRSNESSELGDAYRQ--FKRGRTTLAFPMSFPRGYGAQKKVKAWMEEFQKLPYISPYE 270
           A++R  E       YR           +F ++FP G+   K  +  + ++Q+LPY SPYE
Sbjct: 224 AIERVREIE-----YRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYWSPYE 283

Query: 271 SCRQIDPNS----DLMEKRVVGVLHELLSLTLHKKTKRNYLRSLREELNLPHKFTRIFTR 330
                D  S    + +EKR V  +HELLSLT+ KK     +   R  +NLP K      +
Sbjct: 284 DISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLLQ 343

Query: 331 YPGIFYLSLK---CKTTTVSLREGYQRGKLVNPHPLTRLREK 361
           + GIFY+S +    K  TV LREGY+RG+LV P+ +   R +
Sbjct: 344 HQGIFYISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRR 377

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BLAST of CmoCh03G001240 vs. TrEMBL
Match: A0A0A0KM36_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G218860 PE=4 SV=1)

HSP 1 Score: 707.2 bits (1824), Expect = 1.2e-200
Identity = 348/404 (86.14%), Postives = 370/404 (91.58%), Query Frame = 1


Query: 1   MKSFFFSTLILPSPYLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD 60
           M + FFS+LIL     SP  FL+ Q R IAKVRLKWVKNRSLDHIIDTETDLKAA LLK+
Sbjct: 1   MNNKFFSSLILQYRCQSPKLFLYHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKN 60

Query: 61  AINRSSTGFITAKSIADCPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL 120
           AI RSSTGFITAKSIA+  KLLGLTIPV+RFIRRYPTLFHEFPHSRYANLPCFR+TDTAL
Sbjct: 61  AIKRSSTGFITAKSIANWQKLLGLTIPVIRFIRRYPTLFHEFPHSRYANLPCFRMTDTAL 120

Query: 121 LLDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYP 180
           LLDQ++ SIHQ HESDTVERLCRVLMMMK R +PLQSLRPLEWDLGLPC FERSL+P+YP
Sbjct: 121 LLDQEEGSIHQFHESDTVERLCRVLMMMKTRTVPLQSLRPLEWDLGLPCDFERSLVPRYP 180

Query: 181 DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPMSFPR 240
           DHFRLVKASNGDWCLRL EWREEFAVSALQRSNESS LGDAYRQFK+G TTLAFP SFPR
Sbjct: 181 DHFRLVKASNGDWCLRLKEWREEFAVSALQRSNESSGLGDAYRQFKKGCTTLAFPQSFPR 240

Query: 241 GYGAQKKVKAWMEEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300
           GYGAQ KVKAWMEEFQKLPYISPYESCRQ+DPNSDLMEKRVVGVLHELLSLTLHKKTKRN
Sbjct: 241 GYGAQNKVKAWMEEFQKLPYISPYESCRQVDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300

Query: 301 YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK 360
           YLRSLREE++LPHKFTRIFTRYPGIFYLSLKCKTTTVSL+EGYQRGKLV PHPLT LREK
Sbjct: 301 YLRSLREEMDLPHKFTRIFTRYPGIFYLSLKCKTTTVSLKEGYQRGKLVTPHPLTCLREK 360

Query: 361 FYHVMKTGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDE 405
           FYHVMKTGL YRG+GAA++EKEGILLNNT  E VE+G + ESDE
Sbjct: 361 FYHVMKTGLLYRGRGAAMLEKEGILLNNTV-EVVEDGSNTESDE 403

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BLAST of CmoCh03G001240 vs. TrEMBL
Match: A0A067JGI0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03036 PE=4 SV=1)

HSP 1 Score: 622.9 bits (1605), Expect = 3.0e-175
Identity = 310/404 (76.73%), Postives = 347/404 (85.89%), Query Frame = 1


Query: 9   LILPSPYLSPNP-------FLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKDA 68
           L+ P   L PN        FL LQCR I KVRLKWVKNRSLDHIID ETDLKAA LLKDA
Sbjct: 15  LLQPKTPLEPNNNRNHLYHFL-LQCRSIVKVRLKWVKNRSLDHIIDRETDLKAACLLKDA 74

Query: 69  INRSSTGFITAKSIADCPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTALL 128
           I RS TGF+TAKS+AD  KLLGLT+PVLRF+RRYPTLF EFPH+RYANLPCFRLTDTALL
Sbjct: 75  IKRSPTGFLTAKSVADWHKLLGLTVPVLRFLRRYPTLFSEFPHARYANLPCFRLTDTALL 134

Query: 129 LDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYPD 188
           LD Q+ SIHQ +ESDTVERLCRVLMMMK+R +PLQSL PL+WDLGLP  FE+ LIPKYPD
Sbjct: 135 LDSQEQSIHQNYESDTVERLCRVLMMMKSRTVPLQSLYPLKWDLGLPDNFEKILIPKYPD 194

Query: 189 HFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPMSFPRG 248
           HF+  KASNG  CLRL++WR+EFAVSALQRSNES E+G+ Y++FK+G+TTLAFPMSFPRG
Sbjct: 195 HFQFFKASNGFGCLRLVQWRDEFAVSALQRSNESKEMGNEYQKFKKGQTTLAFPMSFPRG 254

Query: 249 YGAQKKVKAWMEEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNY 308
           YGAQKKV+AWMEEFQKLPYISPYE  RQIDPNS+LMEKRVVGVLHELLSLT+HKKTKRNY
Sbjct: 255 YGAQKKVRAWMEEFQKLPYISPYEDSRQIDPNSELMEKRVVGVLHELLSLTIHKKTKRNY 314

Query: 309 LRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREKF 368
           LRSLREE+ LPHKFTR+FTRYPGIFYLSLKCKTTTV+LREGYQRGKLVNPHPL RLR+KF
Sbjct: 315 LRSLREEMILPHKFTRLFTRYPGIFYLSLKCKTTTVALREGYQRGKLVNPHPLARLRDKF 374

Query: 369 YHVMKTGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDET 406
           ++VM+TGL YR KGA +I  E ILLN+  +E   +  + E  ET
Sbjct: 375 HYVMRTGLLYRNKGANMI-PEDILLNDAEDEIGTDESEEEEGET 416

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BLAST of CmoCh03G001240 vs. TrEMBL
Match: B9SYU8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0041300 PE=4 SV=1)

HSP 1 Score: 622.9 bits (1605), Expect = 3.0e-175
Identity = 302/382 (79.06%), Postives = 339/382 (88.74%), Query Frame = 1


Query: 24  LQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKDAINRSSTGFITAKSIADCPKLLG 83
           LQCR I KVRLKWVKNRSLDHIID ETDLKAA LLKDAI RS TGF+TAKS+AD  KLLG
Sbjct: 32  LQCRSIVKVRLKWVKNRSLDHIIDRETDLKAACLLKDAIKRSPTGFLTAKSVADWQKLLG 91

Query: 84  LTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTALLLDQQQSSIHQIHESDTVERLCR 143
           LT+PVLRF+RRYPTLF EFPH+RY NLPCFRLTDTALLLD Q+ SIHQ +E DTVERLCR
Sbjct: 92  LTVPVLRFLRRYPTLFSEFPHARYTNLPCFRLTDTALLLDSQEQSIHQNYERDTVERLCR 151

Query: 144 VLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYPDHFRLVKASNGDWCLRLMEWREE 203
           +LMMMK+R +PLQSL PL+WDLGLP  FER LIPK+PD+F+ V+ASNG  CLRL +WREE
Sbjct: 152 LLMMMKSRTVPLQSLHPLKWDLGLPDNFERILIPKHPDYFQYVRASNGVGCLRLAQWREE 211

Query: 204 FAVSALQRSNESSELGDAYRQFKRGRTTLAFPMSFPRGYGAQKKVKAWMEEFQKLPYISP 263
           FAVSALQRS+ES E+G+ Y+QFKRG+TTLAFPMSFPRGYGAQKKV+AWMEEFQKLPYISP
Sbjct: 212 FAVSALQRSSESKEMGNKYQQFKRGQTTLAFPMSFPRGYGAQKKVRAWMEEFQKLPYISP 271

Query: 264 YESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLREELNLPHKFTRIFTRYP 323
           YE  RQIDPNS+LMEKRVVG+LHELLSLT+HKKTKRNYLRS+REEL LPHKFTR+FTRYP
Sbjct: 272 YEDSRQIDPNSELMEKRVVGLLHELLSLTIHKKTKRNYLRSVREELILPHKFTRLFTRYP 331

Query: 324 GIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREKFYHVMKTGLFYRGKGAALIEKEG 383
           GIFYLSLKCKTTTV+LREGYQRGKLVNPHP+ RLR+KFYHVM+TGL YR KG   I ++ 
Sbjct: 332 GIFYLSLKCKTTTVALREGYQRGKLVNPHPIARLRDKFYHVMRTGLLYRNKGENAIPQD- 391

Query: 384 ILLNNTAEETVENGLDVESDET 406
           ILLN+  +ETV +  + E DET
Sbjct: 392 ILLNDVEDETVLDESEEEEDET 412

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BLAST of CmoCh03G001240 vs. TrEMBL
Match: A0A061EWX3_THECC (Ubiquitin carboxyl-terminal hydrolase family protein OS=Theobroma cacao GN=TCM_025005 PE=4 SV=1)

HSP 1 Score: 618.6 bits (1594), Expect = 5.7e-174
Identity = 303/392 (77.30%), Postives = 337/392 (85.97%), Query Frame = 1


Query: 16  LSPNPFL-HLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKDAINRSSTGFITAKS 75
           L PNP + H Q R I KVRLKWVKNRSLDH+IDTETDLKAA LLKDAI RS TGF+TAKS
Sbjct: 14  LFPNPQIGHQQWRSIVKVRLKWVKNRSLDHVIDTETDLKAACLLKDAIKRSPTGFLTAKS 73

Query: 76  IADCPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTALLLDQQQSSIHQIHE 135
            AD  KLLGLT+PVLRF+RRYPTLF EFPH+RYANLPCFRLT TALLLD Q+ SIHQ HE
Sbjct: 74  FADWQKLLGLTVPVLRFLRRYPTLFEEFPHARYANLPCFRLTGTALLLDSQEQSIHQAHE 133

Query: 136 SDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYPDHFRLVKASNGDWC 195
           SDT+ERLCR+LMMMK+R  PLQSL PL+WDLGLP  FE+ LIPK+PDHFR VKA  G   
Sbjct: 134 SDTIERLCRLLMMMKSRTAPLQSLHPLKWDLGLPDNFEKVLIPKFPDHFRFVKAPIGVAA 193

Query: 196 LRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPMSFPRGYGAQKKVKAWMEE 255
           +RL++WREE AVSAL+RSNE  E+GD YRQFKRG+TTLAF M+FPRGYGAQKKV+AWMEE
Sbjct: 194 VRLVQWREELAVSALERSNEVGEMGDEYRQFKRGQTTLAFLMNFPRGYGAQKKVRAWMEE 253

Query: 256 FQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLREELNLPHK 315
           FQKLPYISPY+  R IDPNS+LMEKR VGVLHE LSLT+HKKTKRNYLRSLREELN+PHK
Sbjct: 254 FQKLPYISPYDDSRHIDPNSELMEKRAVGVLHEFLSLTIHKKTKRNYLRSLREELNIPHK 313

Query: 316 FTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREKFYHVMKTGLFYRGK 375
           FTR+FTRYPGIFYLSLKCKTTTV+L+EGY+RGKLVNPHPL RLREKFYHVM+TGL YRGK
Sbjct: 314 FTRLFTRYPGIFYLSLKCKTTTVALKEGYRRGKLVNPHPLVRLREKFYHVMRTGLLYRGK 373

Query: 376 GAALIEKEGILLNNTAEETVENGLDVESDETV 407
           G  LI +E ILLN+  E  VE+G + E  E V
Sbjct: 374 GVNLIPREDILLND-LENKVEDGEEEEETEEV 404

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BLAST of CmoCh03G001240 vs. TrEMBL
Match: M5VU13_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020276mg PE=4 SV=1)

HSP 1 Score: 615.9 bits (1587), Expect = 3.7e-173
Identity = 303/396 (76.52%), Postives = 337/396 (85.10%), Query Frame = 1


Query: 1   MKSFFFSTLILPSPYLSPNPFL---HLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASL 60
           M +F FS L+ P     P   L   H Q R IAKVRLKWVKNRSLDHIIDTETDLKAA L
Sbjct: 1   MSTFLFS-LLKPHTTSEPTKLLLHHHHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACL 60

Query: 61  LKDAINRSSTGFITAKSIADCPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTD 120
           LKDAI RS TGF+TAKS AD  KLLGLT+PVLRF+RRYPTLF EFPH+RYA+LPCF+LTD
Sbjct: 61  LKDAIKRSPTGFLTAKSFADWQKLLGLTVPVLRFMRRYPTLFQEFPHARYASLPCFKLTD 120

Query: 121 TALLLDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIP 180
           TALLLD Q+ SIHQ HESDTVERLCRVLMM K++ IPLQSL PL+WDLGLP GFE+ L+P
Sbjct: 121 TALLLDSQEQSIHQTHESDTVERLCRVLMMTKSKTIPLQSLYPLKWDLGLPDGFEKVLVP 180

Query: 181 KYPDHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPMS 240
           KYPD FR++KASNG  CL++++W +E+AVS LQRS E  +LGD YRQFKRG+T LAFPM+
Sbjct: 181 KYPDCFRIIKASNGIGCLKVIQWPKEYAVSELQRSKEGGDLGDEYRQFKRGQTVLAFPMN 240

Query: 241 FPRGYGAQKKVKAWMEEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKT 300
           FP+GYG QKKV+ WMEEFQKLPYISPYE  R IDPNSDLMEKRVVGVLHELLSLTLHKKT
Sbjct: 241 FPKGYGGQKKVRVWMEEFQKLPYISPYEDSRHIDPNSDLMEKRVVGVLHELLSLTLHKKT 300

Query: 301 KRNYLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRL 360
           KRNYLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTV+LREGYQRGKLVN HPLTR+
Sbjct: 301 KRNYLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVALREGYQRGKLVNWHPLTRV 360

Query: 361 REKFYHVMKTGLFYRGKGAALIEKEGILLNNTAEET 394
           REKFYHVM+TGL YR KG  L+  + ILLN+   E+
Sbjct: 361 REKFYHVMRTGLLYRSKGVHLLSPQEILLNSVESES 395

[Close]

BLAST of CmoCh03G001240 vs. TAIR10
Match: AT3G58520.1 (AT3G58520.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 567.4 bits (1461), Expect = 7.6e-162
Identity = 265/376 (70.48%), Postives = 322/376 (85.64%), Query Frame = 1


Query: 29  IAKVRLKWVKNRSLDHIIDTETDLKAASLLKDAINRSSTGFITAKSIADCPKLLGLTIPV 88
           + KVRLKWVKN++LDH+IDTETDLKAA +LKDAI RS TGF+TAKS+AD  KLLGLT+PV
Sbjct: 28  MTKVRLKWVKNKNLDHVIDTETDLKAACILKDAIKRSPTGFLTAKSVADWQKLLGLTVPV 87

Query: 89  LRFIRRYPTLFHEFPHSRYANLPCFRLTDTALLLDQQQSSIHQIHESDTVERLCRVLMMM 148
           LRF+RRYPTLFHEFPH+RYA+LPCF+LTDTAL+LD Q+  IHQ HE+DTVERLCRVLMMM
Sbjct: 88  LRFLRRYPTLFHEFPHARYASLPCFKLTDTALMLDSQEEIIHQSHEADTVERLCRVLMMM 147

Query: 149 KNRAIPLQSLRPLEWDLGLPCGFERSLIPKYPDHFRLVKASNGDWCLRLMEWREEFAVSA 208
           +++ + L+SL  L++DLGLP  +E++L+ KYPDHF  VKASNG+ CL+L++WR+EFA SA
Sbjct: 148 RSKTVSLRSLHSLKFDLGLPDNYEKTLVMKYPDHFCFVKASNGNPCLKLVKWRDEFAFSA 207

Query: 209 LQRSNESSELG---DAYRQFKRGRTTLAFPMSFPRGYGAQKKVKAWMEEFQKLPYISPYE 268
           LQ+ NE +++      YR+FKRG++TL FPMSFPRGYGAQKKVKAWM+EFQKLPYISPY+
Sbjct: 208 LQKRNEDNDVSGEESRYREFKRGQSTLTFPMSFPRGYGAQKKVKAWMDEFQKLPYISPYD 267

Query: 269 SCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLREELNLPHKFTRIFTRYPGI 328
               IDP SDLMEKR V VLHELLSLT+HKKTKRNYLRS+R ELN+PHKFTR+FTRYPGI
Sbjct: 268 DPSNIDPESDLMEKRAVAVLHELLSLTIHKKTKRNYLRSMRAELNIPHKFTRLFTRYPGI 327

Query: 329 FYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREKFYHVMKTGLFYRGKGAALIEKEGIL 388
           FYLSLKCKTTTV L+EGY+RGKLV+PHPLTRLR+KFYHVM+TG  YR +G  ++ KE +L
Sbjct: 328 FYLSLKCKTTTVILKEGYRRGKLVDPHPLTRLRDKFYHVMRTGFLYRARGLGMVSKEELL 387

Query: 389 LNNTAEETVENGLDVE 402
           L+   ++  E G + E
Sbjct: 388 LDRPEDDLEEEGSEEE 403

[Close]

BLAST of CmoCh03G001240 vs. TAIR10
Match: AT5G48040.1 (AT5G48040.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 270.4 bits (690), Expect = 1.9e-72
Identity = 158/399 (39.60%), Postives = 224/399 (56.14%), Query Frame = 1


Query: 21  FLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKDAINRSSTGFITAKSIADCPK 80
           F + Q   +  V+LKWVK+R LD ++  E  L+A   L   I+ S    +    +     
Sbjct: 24  FFYQQRCGLVNVKLKWVKDRELDAVVVREKHLRAVCNLVSVISASPDLRLPIFKLLPHRG 83

Query: 81  LLGLT--IPVLRFIRRYPTLF--HEFPHSRYANLPCFRLTDTALLLDQQQSSIHQIHESD 140
            LGL   + +  FIRRYP +F  H +  S   ++PCF LT   + L  ++  + +++E D
Sbjct: 84  QLGLPQELKLSAFIRRYPNIFVEHCYWDSAGTSVPCFGLTRETIDLYYEEVDVSRVNERD 143

Query: 141 TVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYPDHFRLVKASNGDWCLR 200
            + RLC++LM+   R + L S+  L WDLGLP  +  SLI K+PD F LVK S+    L+
Sbjct: 144 VLVRLCKLLMLTCERTLSLHSIDHLRWDLGLPYDYRDSLITKHPDLFSLVKLSSDLDGLK 203

Query: 201 LMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPMSFPRGYGAQKKVKAWMEEFQ 260
           L+ W E  AVS +Q   +   +G+  R        +AFP+ F RG+G ++K   W++E+Q
Sbjct: 204 LIHWDEHLAVSQMQLRED---VGNDER--------MAFPVKFTRGFGLKRKSIEWLQEWQ 263

Query: 261 KLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLREELNLPHKFT 320
           +LPY SPY     +DP +DL EKR VGV HELL LT+ KKT+R  + +LR+   LP KFT
Sbjct: 264 RLPYTSPYVDASHLDPRTDLSEKRNVGVFHELLHLTIGKKTERKNVSNLRKPFALPQKFT 323

Query: 321 RIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREKFYHVMKTGLFYRGKGA 380
           ++F R+PGIFY+S+KC T TV LRE Y R  L+  HPL  +REKF ++M  G   R +G 
Sbjct: 324 KVFERHPGIFYISMKCDTQTVILREAYDRRHLIEKHPLVEVREKFANMMNEGFLDRSRGL 383

Query: 381 ALIEKEGILLNNTAEETVENGLDVESDETVLLAVNSIRG 416
                E  L  N     ++    V SDE   L  N I G
Sbjct: 384 YQKSVEADLEKN----NIKTSYPVWSDEEEELDNNLISG 407

[Close]

BLAST of CmoCh03G001240 vs. TAIR10
Match: AT1G71850.1 (AT1G71850.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 210.7 bits (535), Expect = 1.8e-54
Identity = 114/339 (33.63%), Postives = 192/339 (56.64%), Query Frame = 1


Query: 35  KWVKNRSLDHIIDTETDLKAASLLKDAINRSSTGFITAKSIADCPKLLGLTIPVLRFIRR 94
           K+V++R LDH ++ E +L+    +KD I       +    I      L + +  + FIR 
Sbjct: 30  KFVRDRGLDHAVEREKNLRPLLSIKDLIRSEPAKSVPISVITSQKDSLRVPLRPIEFIRS 89

Query: 95  YPTLFHEFPHSRYANLPCFRLTDTALLLDQQQSSIH--QIHESDTVERLCRVLMMMKNRA 154
           +P++F EF        P   LT   L  D  +  ++  + ++    +RL ++LM+ +   
Sbjct: 90  FPSVFQEFLPGGIGIHPHISLTPEILNHDADEQLVYGSETYKQGLADRLLKLLMINRINK 149

Query: 155 IPLQSLRPLEWDLGLPCGFERSLIPKYPDHFRLVKAS----NGDWCLRLMEWREEFAVSA 214
           IPL+ L  L+WDLGLP  +  +++P++PD+FR++K+     +G+  L L+ W  E AVS 
Sbjct: 150 IPLEILDLLKWDLGLPKDYVETMVPEFPDYFRVIKSKLRGCSGE--LELVCWSNEHAVSV 209

Query: 215 LQRSNESSELGDAYRQFKRGRTTLAFPMSFPRGYGAQKKVKAWMEEFQKLPYISPYESCR 274
           L++   +   G+    + +G + +AFPM F  G+   KK+K W++++QKLPYISPYE+  
Sbjct: 210 LEKKARTLRKGE----YTKG-SAIAFPMKFSNGFVVDKKMKKWIDDWQKLPYISPYENAL 269

Query: 275 QIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLREELNLPHKFTRIFTRYPGIFYL 334
            +   SD  +K    VLHE+++L + KK +++ +  L E + L  +F R+   +PGIFYL
Sbjct: 270 HLSATSDESDKWAAAVLHEIMNLFVSKKVEKDAILHLGEFMGLRSRFKRVLHNHPGIFYL 329

Query: 335 SLKCKTTTVSLREGYQRGKLVNPHPLTRLREKFYHVMKT 368
           S K +T TV LR+GY+RG L+  + L   R ++  +M T
Sbjct: 330 SSKLRTHTVVLRDGYKRGMLIESNELVTSRNRYMKLMNT 361

[Close]

BLAST of CmoCh03G001240 vs. TAIR10
Match: AT2G39120.1 (AT2G39120.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 194.5 bits (493), Expect = 1.3e-49
Identity = 115/344 (33.43%), Postives = 184/344 (53.49%), Query Frame = 1


Query: 25  QCRRIAKVRLKWVKNRSLDHI--IDTETDLKAASLLKDAINRSSTGFITAKSIADCPKLL 84
           Q R    V +KW ++   D+I  I   + LK+   LK+ I +     I   +I+   +  
Sbjct: 20  QKRTYVDVYMKWKRDPYFDNIEHILRSSQLKSVVSLKNCIVQEPNRCIPISAISKKTRQF 79

Query: 85  GLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTALLLDQQQSSIHQIHESDTVERLC 144
            ++  +  F+R++P++F EF    Y NLP FRLT  A  LD+Q+  ++Q    D  +RL 
Sbjct: 80  DVSTKIAHFLRKFPSIFEEFVGPEY-NLPWFRLTPEATELDRQERVVYQTSADDLRDRLK 139

Query: 145 RVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYPDHFRLVKASNGDWCLRLMEWRE 204
           ++++M K+  +PL  ++ ++W LGLP  + +         FR V   +G   L +     
Sbjct: 140 KLILMSKDNVLPLSIVQGMKWYLGLPDDYLQFPDMNLDSSFRFVDMEDGVKGLAVDYNGG 199

Query: 205 EFAVSALQRSNESSELGDAYRQFKRGRTTLAFPMSFPRGYGAQKKVKAWMEEFQKLPYIS 264
           +  +S LQ++      G+   +       + FP+   +G   + K++ W+ EFQKLPY+S
Sbjct: 200 DKVLSVLQKNAMKKRRGEVSLE------EIEFPLFPSKGCRLRVKIEDWLMEFQKLPYVS 259

Query: 265 PYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLREELNLPHKFTRIFTRY 324
           PY+    +DP+SD+ EKRVVG LHELL L +    +R  L  L++   LP K  + F R+
Sbjct: 260 PYDDYSCLDPSSDIAEKRVVGFLHELLCLFVEHSAERKKLLCLKKHFGLPQKVHKAFERH 319

Query: 325 PGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREKFYHVMK 367
           P IFYLS+K KT T  LRE Y+    V  HP+  +R+K+  +MK
Sbjct: 320 PQIFYLSMKNKTCTAILREPYRDKASVETHPVLGVRKKYIQLMK 356

[Close]

BLAST of CmoCh03G001240 vs. TAIR10
Match: AT4G24320.1 (AT4G24320.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 191.8 bits (486), Expect = 8.6e-49
Identity = 127/358 (35.47%), Postives = 190/358 (53.07%), Query Frame = 1


Query: 25  QCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKDAINRSSTGFITAKSIADCPKLLGL 84
           Q R     R+KWV +  LD  +  E +LK    LKD I  S +  +   S++    L+ L
Sbjct: 14  QRRTFVNARVKWVSDHYLDEAVQREKNLKQVISLKDRIVSSPSKSLPLSSLSLLKPLVNL 73

Query: 85  TIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTALLLDQQQSSIHQI--HESDTVERLC 144
            I    F ++YP++F  F  S    L   RLT  AL L +++ +IH      + TV+RL 
Sbjct: 74  HITAAAFFQKYPSVFTTFQPSPSHPLHV-RLTPQALTLHKEEETIHLSPPQRNVTVQRLT 133

Query: 145 RVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYPDHFRLVKASNG-----DWCLRL 204
           + LM+    ++PL  L    +DLGLP  +  SLI  YP++F + +  +         L +
Sbjct: 134 KFLMLTGAGSLPLYVLDRFRFDLGLPRDYITSLIGDYPEYFEVTEIKDRLTGEKTLALTI 193

Query: 205 MEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPMSFPRGYGAQKKVKAWMEEFQK 264
              R    VS ++R  E++  G   ++  R R    + M+FP+GY   K+VK W+E++Q 
Sbjct: 194 SSRRNNLPVSEMER-REATIDGSRVKKGLRIR----YSMNFPKGYELHKRVKNWVEQWQN 253

Query: 265 LPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLREELNLPHKFTR 324
           LPYISPYE+   +   SD  EK  V VLHELL L + KKT+ + +  L E L    +F +
Sbjct: 254 LPYISPYENAFHLGSYSDQAEKWAVAVLHELLFLLVSKKTETDNVICLGEYLGFGMRFKK 313

Query: 325 IFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREKFYHVM-KTGLFYRGK 375
               +PGIFY+S K +T TV LRE Y +  L+  HPL  +R ++ ++M K+G   RGK
Sbjct: 314 ALVHHPGIFYMSHKIRTQTVVLREAYHKVFLLEKHPLMGIRHQYIYLMSKSG---RGK 362

[Close]

BLAST of CmoCh03G001240 vs. NCBI nr
Match: gi|659114138|ref|XP_008456922.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo])

HSP 1 Score: 709.9 bits (1831), Expect = 2.7e-201
Identity = 350/404 (86.63%), Postives = 371/404 (91.83%), Query Frame = 1


Query: 1   MKSFFFSTLILPSPYLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD 60
           M + FFS+LIL +   SP  FL+ Q R IAKVRLKWVKNRSLDHIIDTETDLKAA LLK+
Sbjct: 1   MNNLFFSSLILQNRCQSPKLFLYHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKN 60

Query: 61  AINRSSTGFITAKSIADCPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL 120
           AI RSSTGFITAKSIA+  KLLGLTIPV+RFIRRYPTLFHEFPHSRY NLPCFRLTDTAL
Sbjct: 61  AIKRSSTGFITAKSIANWQKLLGLTIPVIRFIRRYPTLFHEFPHSRYTNLPCFRLTDTAL 120

Query: 121 LLDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYP 180
           LLDQ++SSIHQ HESDTVERLCRVLMMMK R +PLQSLRPLEWDLGLPC FERSL+P+YP
Sbjct: 121 LLDQEESSIHQFHESDTVERLCRVLMMMKTRVLPLQSLRPLEWDLGLPCDFERSLVPRYP 180

Query: 181 DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPMSFPR 240
           DHF+L KASNGDWCLRL EWREEFAVSALQRSNESS LGDAYRQFKRG TTLAFP+SFPR
Sbjct: 181 DHFQLFKASNGDWCLRLKEWREEFAVSALQRSNESSGLGDAYRQFKRGCTTLAFPLSFPR 240

Query: 241 GYGAQKKVKAWMEEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300
           GYGAQ KVKAWMEEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN
Sbjct: 241 GYGAQNKVKAWMEEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300

Query: 301 YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK 360
           YLRSLREE+NLPHKFTRIFTRYPGIFYLSLKCKTTTVSL+EGY++GKLV PHPLT +REK
Sbjct: 301 YLRSLREEMNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLKEGYRQGKLVTPHPLTCVREK 360

Query: 361 FYHVMKTGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDE 405
           FYHVMKTGL YRGKGAAL+EKEGILLNNTAEE  E G + ESDE
Sbjct: 361 FYHVMKTGLLYRGKGAALLEKEGILLNNTAEE-AEGGSNTESDE 403

[Close]

BLAST of CmoCh03G001240 vs. NCBI nr
Match: gi|778701487|ref|XP_011655033.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus])

HSP 1 Score: 707.2 bits (1824), Expect = 1.7e-200
Identity = 348/404 (86.14%), Postives = 370/404 (91.58%), Query Frame = 1


Query: 1   MKSFFFSTLILPSPYLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD 60
           M + FFS+LIL     SP  FL+ Q R IAKVRLKWVKNRSLDHIIDTETDLKAA LLK+
Sbjct: 1   MNNKFFSSLILQYRCQSPKLFLYHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKN 60

Query: 61  AINRSSTGFITAKSIADCPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL 120
           AI RSSTGFITAKSIA+  KLLGLTIPV+RFIRRYPTLFHEFPHSRYANLPCFR+TDTAL
Sbjct: 61  AIKRSSTGFITAKSIANWQKLLGLTIPVIRFIRRYPTLFHEFPHSRYANLPCFRMTDTAL 120

Query: 121 LLDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYP 180
           LLDQ++ SIHQ HESDTVERLCRVLMMMK R +PLQSLRPLEWDLGLPC FERSL+P+YP
Sbjct: 121 LLDQEEGSIHQFHESDTVERLCRVLMMMKTRTVPLQSLRPLEWDLGLPCDFERSLVPRYP 180

Query: 181 DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPMSFPR 240
           DHFRLVKASNGDWCLRL EWREEFAVSALQRSNESS LGDAYRQFK+G TTLAFP SFPR
Sbjct: 181 DHFRLVKASNGDWCLRLKEWREEFAVSALQRSNESSGLGDAYRQFKKGCTTLAFPQSFPR 240

Query: 241 GYGAQKKVKAWMEEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300
           GYGAQ KVKAWMEEFQKLPYISPYESCRQ+DPNSDLMEKRVVGVLHELLSLTLHKKTKRN
Sbjct: 241 GYGAQNKVKAWMEEFQKLPYISPYESCRQVDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300

Query: 301 YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK 360
           YLRSLREE++LPHKFTRIFTRYPGIFYLSLKCKTTTVSL+EGYQRGKLV PHPLT LREK
Sbjct: 301 YLRSLREEMDLPHKFTRIFTRYPGIFYLSLKCKTTTVSLKEGYQRGKLVTPHPLTCLREK 360

Query: 361 FYHVMKTGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDE 405
           FYHVMKTGL YRG+GAA++EKEGILLNNT  E VE+G + ESDE
Sbjct: 361 FYHVMKTGLLYRGRGAAMLEKEGILLNNTV-EVVEDGSNTESDE 403

[Close]

BLAST of CmoCh03G001240 vs. NCBI nr
Match: gi|1009161405|ref|XP_015898879.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Ziziphus jujuba])

HSP 1 Score: 632.1 bits (1629), Expect = 7.1e-178
Identity = 313/409 (76.53%), Postives = 351/409 (85.82%), Query Frame = 1


Query: 1   MKSFFFSTLILPSPYLSP--NPFLHL--QCRRIAKVRLKWVKNRSLDHIIDTETDLKAAS 60
           +KS  F+ L    P   P  NP LH   Q R IAKVRLKWV+NRSLDHIID ETDLKAAS
Sbjct: 5   IKSCLFNLLKSNPPPFQPTTNPALHQHHQWRGIAKVRLKWVRNRSLDHIIDIETDLKAAS 64

Query: 61  LLKDAINRSSTGFITAKSIADCPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLT 120
           LLKDAI RS TGF+TAKS AD  KLLGLT+PVLRF+RRYPTLFHEFPH+RYANLPCF+LT
Sbjct: 65  LLKDAIKRSPTGFLTAKSFADWQKLLGLTVPVLRFVRRYPTLFHEFPHTRYANLPCFKLT 124

Query: 121 DTALLLDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLI 180
           +TALLLD Q+ SIHQ HE+DTVERLCR+LMM K R +P QSL P++WDLGLP  FE++LI
Sbjct: 125 ETALLLDSQEQSIHQTHENDTVERLCRLLMMAKTRTLPFQSLYPMKWDLGLPDNFEKTLI 184

Query: 181 PKYPDHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPM 240
           PKY DHFRLVKASNG  CLRL +WREEFAVSALQRSNE++E+GD YRQFKRG+TTLAF M
Sbjct: 185 PKYQDHFRLVKASNGSDCLRLAKWREEFAVSALQRSNENAEVGDEYRQFKRGQTTLAFSM 244

Query: 241 SFPRGYGAQKKVKAWMEEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKK 300
           SFPRGYGAQKKVKAWMEEFQKLPYISPYE+ R IDP+S+LMEKRVVGVLHELLSLT+HKK
Sbjct: 245 SFPRGYGAQKKVKAWMEEFQKLPYISPYENSRHIDPHSELMEKRVVGVLHELLSLTVHKK 304

Query: 301 TKRNYLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTR 360
           TKRNYLRS+REELNLPHKFTRIFTRYPGIFYLSLKCKTTTV+L+EGYQRGKLVNPHPL R
Sbjct: 305 TKRNYLRSVREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVALKEGYQRGKLVNPHPLAR 364

Query: 361 LREKFYHVMKTGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDET 406
           LREKFYHVM+TGL YRGKG   + +E +LL + ++E  E   + E +ET
Sbjct: 365 LREKFYHVMRTGLLYRGKGVNFLPQEDLLLKSASDEEEEEE-EEEEEET 412

[Close]

BLAST of CmoCh03G001240 vs. NCBI nr
Match: gi|802776138|ref|XP_012090842.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas])

HSP 1 Score: 622.9 bits (1605), Expect = 4.3e-175
Identity = 310/404 (76.73%), Postives = 347/404 (85.89%), Query Frame = 1


Query: 9   LILPSPYLSPNP-------FLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKDA 68
           L+ P   L PN        FL LQCR I KVRLKWVKNRSLDHIID ETDLKAA LLKDA
Sbjct: 15  LLQPKTPLEPNNNRNHLYHFL-LQCRSIVKVRLKWVKNRSLDHIIDRETDLKAACLLKDA 74

Query: 69  INRSSTGFITAKSIADCPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTALL 128
           I RS TGF+TAKS+AD  KLLGLT+PVLRF+RRYPTLF EFPH+RYANLPCFRLTDTALL
Sbjct: 75  IKRSPTGFLTAKSVADWHKLLGLTVPVLRFLRRYPTLFSEFPHARYANLPCFRLTDTALL 134

Query: 129 LDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYPD 188
           LD Q+ SIHQ +ESDTVERLCRVLMMMK+R +PLQSL PL+WDLGLP  FE+ LIPKYPD
Sbjct: 135 LDSQEQSIHQNYESDTVERLCRVLMMMKSRTVPLQSLYPLKWDLGLPDNFEKILIPKYPD 194

Query: 189 HFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPMSFPRG 248
           HF+  KASNG  CLRL++WR+EFAVSALQRSNES E+G+ Y++FK+G+TTLAFPMSFPRG
Sbjct: 195 HFQFFKASNGFGCLRLVQWRDEFAVSALQRSNESKEMGNEYQKFKKGQTTLAFPMSFPRG 254

Query: 249 YGAQKKVKAWMEEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNY 308
           YGAQKKV+AWMEEFQKLPYISPYE  RQIDPNS+LMEKRVVGVLHELLSLT+HKKTKRNY
Sbjct: 255 YGAQKKVRAWMEEFQKLPYISPYEDSRQIDPNSELMEKRVVGVLHELLSLTIHKKTKRNY 314

Query: 309 LRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREKF 368
           LRSLREE+ LPHKFTR+FTRYPGIFYLSLKCKTTTV+LREGYQRGKLVNPHPL RLR+KF
Sbjct: 315 LRSLREEMILPHKFTRLFTRYPGIFYLSLKCKTTTVALREGYQRGKLVNPHPLARLRDKF 374

Query: 369 YHVMKTGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDET 406
           ++VM+TGL YR KGA +I  E ILLN+  +E   +  + E  ET
Sbjct: 375 HYVMRTGLLYRNKGANMI-PEDILLNDAEDEIGTDESEEEEGET 416

[Close]

BLAST of CmoCh03G001240 vs. NCBI nr
Match: gi|1000943030|ref|XP_015582086.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Ricinus communis])

HSP 1 Score: 622.9 bits (1605), Expect = 4.3e-175
Identity = 302/382 (79.06%), Postives = 339/382 (88.74%), Query Frame = 1


Query: 24  LQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKDAINRSSTGFITAKSIADCPKLLG 83
           LQCR I KVRLKWVKNRSLDHIID ETDLKAA LLKDAI RS TGF+TAKS+AD  KLLG
Sbjct: 32  LQCRSIVKVRLKWVKNRSLDHIIDRETDLKAACLLKDAIKRSPTGFLTAKSVADWQKLLG 91

Query: 84  LTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTALLLDQQQSSIHQIHESDTVERLCR 143
           LT+PVLRF+RRYPTLF EFPH+RY NLPCFRLTDTALLLD Q+ SIHQ +E DTVERLCR
Sbjct: 92  LTVPVLRFLRRYPTLFSEFPHARYTNLPCFRLTDTALLLDSQEQSIHQNYERDTVERLCR 151

Query: 144 VLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYPDHFRLVKASNGDWCLRLMEWREE 203
           +LMMMK+R +PLQSL PL+WDLGLP  FER LIPK+PD+F+ V+ASNG  CLRL +WREE
Sbjct: 152 LLMMMKSRTVPLQSLHPLKWDLGLPDNFERILIPKHPDYFQYVRASNGVGCLRLAQWREE 211

Query: 204 FAVSALQRSNESSELGDAYRQFKRGRTTLAFPMSFPRGYGAQKKVKAWMEEFQKLPYISP 263
           FAVSALQRS+ES E+G+ Y+QFKRG+TTLAFPMSFPRGYGAQKKV+AWMEEFQKLPYISP
Sbjct: 212 FAVSALQRSSESKEMGNKYQQFKRGQTTLAFPMSFPRGYGAQKKVRAWMEEFQKLPYISP 271

Query: 264 YESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLREELNLPHKFTRIFTRYP 323
           YE  RQIDPNS+LMEKRVVG+LHELLSLT+HKKTKRNYLRS+REEL LPHKFTR+FTRYP
Sbjct: 272 YEDSRQIDPNSELMEKRVVGLLHELLSLTIHKKTKRNYLRSVREELILPHKFTRLFTRYP 331

Query: 324 GIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREKFYHVMKTGLFYRGKGAALIEKEG 383
           GIFYLSLKCKTTTV+LREGYQRGKLVNPHP+ RLR+KFYHVM+TGL YR KG   I ++ 
Sbjct: 332 GIFYLSLKCKTTTVALREGYQRGKLVNPHPIARLRDKFYHVMRTGLLYRNKGENAIPQD- 391

Query: 384 ILLNNTAEETVENGLDVESDET 406
           ILLN+  +ETV +  + E DET
Sbjct: 392 ILLNDVEDETVLDESEEEEDET 412

The following BLAST results are available for this feature:

BLAST of CmoCh03G001240 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPD1_ARATH	1.2e-28	32.98	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1	[more]

BLAST of CmoCh03G001240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KM36_CUCSA	1.2e-200	86.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G218860 PE=4 SV=1	[more]
A0A067JGI0_JATCU	3.0e-175	76.73	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03036 PE=4 SV=1	[more]
B9SYU8_RICCO	3.0e-175	79.06	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0041300 PE=4 SV=1	[more]
A0A061EWX3_THECC	5.7e-174	77.30	Ubiquitin carboxyl-terminal hydrolase family protein OS=Theobroma cacao GN=TCM_0...	[more]
M5VU13_PRUPE	3.7e-173	76.52	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020276mg PE=4 SV=1	[more]

BLAST of CmoCh03G001240 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G58520.1	7.6e-162	70.48	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT5G48040.1	1.9e-72	39.60	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT1G71850.1	1.8e-54	33.63	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT2G39120.1	1.3e-49	33.43	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT4G24320.1	8.6e-49	35.47	Ubiquitin carboxyl-terminal hydrolase family protein	[more]

BLAST of CmoCh03G001240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114138\|ref\|XP_008456922.1\|	2.7e-201	86.63	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo]	[more]
gi\|778701487\|ref\|XP_011655033.1\|	1.7e-200	86.14	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus]	[more]
gi\|1009161405\|ref\|XP_015898879.1\|	7.1e-178	76.53	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Ziziphus jujuba]	[more]
gi\|802776138\|ref\|XP_012090842.1\|	4.3e-175	76.73	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]	[more]
gi\|1000943030\|ref\|XP_015582086.1\|	4.3e-175	79.06	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021099	PORR_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G001240.1	CmoCh03G001240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021099	Plant organelle RNA recognition domain	PFAM	PF11955	PORR	coord: 37..368 score: 2.8E
None	No IPR available	PANTHER	PTHR31476	FAMILY NOT NAMED	coord: 23..406 score: 1.5E
None	No IPR available	PANTHER	PTHR31476:SF10	SUBFAMILY NOT NAMED	coord: 23..406 score: 1.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh03G001240	CmaCh03G001150	Cucurbita maxima (Rimu)	cmacmoB654
CmoCh03G001240	Bhi03G002241	Wax gourd	cmowgoB0788
CmoCh03G001240	Carg25733	Silver-seed gourd	carcmoB1158

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh03G001240	Silver-seed gourd	carcmoB0394
CmoCh03G001240	Cucumber (Chinese Long) v3	cmocucB0782
CmoCh03G001240	Watermelon (97103) v2	cmowmbB658
CmoCh03G001240	Wax gourd	cmowgoB0798
CmoCh03G001240	Cucurbita moschata (Rifu)	cmocmoB461
CmoCh03G001240	Cucumber (Gy14) v1	cgycmoB0974
CmoCh03G001240	Cucurbita maxima (Rimu)	cmacmoB863
CmoCh03G001240	Wild cucumber (PI 183967)	cmocpiB670
CmoCh03G001240	Cucumber (Chinese Long) v2	cmocuB658
CmoCh03G001240	Melon (DHL92) v3.5.1	cmomeB601
CmoCh03G001240	Melon (DHL92) v3.5.1	cmomeB610
CmoCh03G001240	Watermelon (Charleston Gray)	cmowcgB585
CmoCh03G001240	Watermelon (97103) v1	cmowmB628
CmoCh03G001240	Cucurbita pepo (Zucchini)	cmocpeB606
CmoCh03G001240	Cucurbita pepo (Zucchini)	cmocpeB620
CmoCh03G001240	Bottle gourd (USVL1VR-Ls)	cmolsiB583
CmoCh03G001240	Cucumber (Gy14) v2	cgybcmoB508
CmoCh03G001240	Melon (DHL92) v3.6.1	cmomedB689
CmoCh03G001240	Melon (DHL92) v3.6.1	cmomedB702