CmoCh02G018380 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G018380
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionLipid transfer protein
LocationCmo_Chr02 : 10423094 .. 10424283 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAATCAACCCCCAAAAAAAGTTAAACAACCGCAACAAATGGGCATTGAGTCAGCCCTTTTCCTACTCCTTGTGGCTTTCGGTATGAGCCATGAGAGCGTGGCCCAGTCAGCTGGTTGCACCACGGCGTTGATAAGCTTATCTCCATGCCTAACTTATATCACAGGCAGCGGAGGCTCTTCCACTTCTACTGCTCCATCTTCTTCTTGCTGCTCGCGCCTTGCCACCGTGGTTCAATCGCAGCCACAGTGCCTTTGCTCGGCGCTCAATGGTGGCGCTGCGGTTTCTCTCGGTGTCACTATCAACCGGACTCGAGCTCTTGGGCTTCCTGCTGCCTGTAGTGTTCAAACGCCGCCACCCAGCCGCTGTAATGGTAACCAAATTCTATTCTTTTCAACTTGCACCTGGCGCTTCTAAATATAGTCAATCGTCTCTCTTGTTTACATCATTTTTCAATTTCGTCTCTCTTGTTTACATCATTCTTCAATTTCGTCTCTAATTTTCCAAAATTCTCAACTTTACATTCTAGCATATTTTAAATTCTCAATTAGGGTCCGAATAAAAAATATTAATTAGCAACACAACAATTACGCATGTTATTTTAATAAAAAAAAAAAAAAAAAAAGATGTAAGTTTTAGTGAAAAAAATTAAATACGTAATTGTTGAGTTAAAAAAGTATATGCAATTTTGTTTTTGGTGAGCAGAATGGAGTTGAGGATTTAAAAAGATTGAAAATGACCTTACATGATTAGAATATTTTATATTTTCCGGATGGGCAATGATGAATTCCACAACAGCAGAGACAAATTTTTAGTTAAAATGCCGAAGACAGACTCAAAGAGTGGTGGAGGACATCATCATATAAACACTAACTTGGATGTGAAAACACACAGATGCTAATGGAGCTGCTGCTGCTCCAGCAATATCTCCTATAAGTTCGCCGGGGAATTCACCTTCAGATGACGAAGAACTTGGTGAAGCTCCAACAACACGGGAGACTACTTTTCCTTCGGAAGTAGACTCCAAATATGTTCCAAACAACAGGAGGAATCCCGAGAGCGGCGGCCGGAGCTTAATCAAGACGCCCTTTTATGATCTCACTGTTGTCGGCCTACTTCTGACAGCTCTGTTATAAGCTGAATGAAACGACCGACCCCAAGCAAAGATTATATATTCACATATGTATCGAAC

mRNA sequence

GAATCAACCCCCAAAAAAAGTTAAACAACCGCAACAAATGGGCATTGAGTCAGCCCTTTTCCTACTCCTTGTGGCTTTCGGTATGAGCCATGAGAGCGTGGCCCAGTCAGCTGGTTGCACCACGGCGTTGATAAGCTTATCTCCATGCCTAACTTATATCACAGGCAGCGGAGGCTCTTCCACTTCTACTGCTCCATCTTCTTCTTGCTGCTCGCGCCTTGCCACCGTGGTTCAATCGCAGCCACAGTGCCTTTGCTCGGCGCTCAATGGTGGCGCTGCGGTTTCTCTCGGTGTCACTATCAACCGGACTCGAGCTCTTGGGCTTCCTGCTGCCTGTAGTGTTCAAACGCCGCCACCCAGCCGCTGTAATGATGCTAATGGAGCTGCTGCTGCTCCAGCAATATCTCCTATAAGTTCGCCGGGGAATTCACCTTCAGATGACGAAGAACTTGGTGAAGCTCCAACAACACGGGAGACTACTTTTCCTTCGGAAGTAGACTCCAAATATGTTCCAAACAACAGGAGGAATCCCGAGAGCGGCGGCCGGAGCTTAATCAAGACGCCCTTTTATGATCTCACTGTTGTCGGCCTACTTCTGACAGCTCTGTTATAAGCTGAATGAAACGACCGACCCCAAGCAAAGATTATATATTCACATATGTATCGAAC

Coding sequence (CDS)

ATGGGCATTGAGTCAGCCCTTTTCCTACTCCTTGTGGCTTTCGGTATGAGCCATGAGAGCGTGGCCCAGTCAGCTGGTTGCACCACGGCGTTGATAAGCTTATCTCCATGCCTAACTTATATCACAGGCAGCGGAGGCTCTTCCACTTCTACTGCTCCATCTTCTTCTTGCTGCTCGCGCCTTGCCACCGTGGTTCAATCGCAGCCACAGTGCCTTTGCTCGGCGCTCAATGGTGGCGCTGCGGTTTCTCTCGGTGTCACTATCAACCGGACTCGAGCTCTTGGGCTTCCTGCTGCCTGTAGTGTTCAAACGCCGCCACCCAGCCGCTGTAATGATGCTAATGGAGCTGCTGCTGCTCCAGCAATATCTCCTATAAGTTCGCCGGGGAATTCACCTTCAGATGACGAAGAACTTGGTGAAGCTCCAACAACACGGGAGACTACTTTTCCTTCGGAAGTAGACTCCAAATATGTTCCAAACAACAGGAGGAATCCCGAGAGCGGCGGCCGGAGCTTAATCAAGACGCCCTTTTATGATCTCACTGTTGTCGGCCTACTTCTGACAGCTCTGTTATAA
Homology
[Close]
BLAST of CmoCh02G018380 vs. Swiss-Prot
Match: NLTL2_ARATH (Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-11
Identity = 44/132 (33.33%), Postives = 71/132 (53.79%), Query Frame = 1 

Query: 1   MGIESALFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSR 60
           M   + L +  V   MS E    +  C++ +++++ CL+++T     ST   P  +CCS 
Sbjct: 1   MAYATILMIFSVVALMSGERAHAAVDCSSLILNMADCLSFVTSG---STVVKPEGTCCSG 60

Query: 61  LATVVQSQPQCLCSALNGGAAVSLGVTINRTRALGLPAACSVQTPPPSRCN---DANGAA 120
           L TVV++ P+CLC A       SLG+T++ ++A  LP+ C V  PP +RC      +  A
Sbjct: 61  LKTVVRTGPECLCEAFKNSG--SLGLTLDLSKAASLPSVCKVAAPPSARCGLSVSGDPPA 120

Query: 121 AAPAISPISSPG 130
            AP +SP +  G
Sbjct: 121 TAPGLSPTAGAG 127

[Close]
BLAST of CmoCh02G018380 vs. Swiss-Prot
Match: NLTL5_ARATH (Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thaliana GN=At5g64080 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.1e-11
Identity = 63/182 (34.62%), Postives = 89/182 (48.90%), Query Frame = 1 

Query: 15  GMSHESV---AQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLATVVQSQPQC 74
           G SH      A S  C+T +++++ CL++++  G   T   P  +CCS L TV+++  QC
Sbjct: 28  GASHHHATAPAPSVDCSTLILNMADCLSFVSSGG---TVAKPEGTCCSGLKTVLKADSQC 87

Query: 75  LCSALNGGAAVSLGVTINRTRALGLPAACSVQTPPPSRCNDANGAAAAPAISPISSPGNS 134
           LC A    A  SLGVT+N T+A  LPAAC +  P  + C    G + AP+ +P  +PG +
Sbjct: 88  LCEAFKSSA--SLGVTLNITKASTLPAACKLHAPSIATC----GLSVAPSTAPGLAPGVA 147

Query: 135 PSDDEELG-EAPTTRETTFPSEVDSKYVPNNRRNPESG--GRSLIKTPFYDLTVVGLLLT 191
            +  E  G  AP                     NP SG  G SLI T F   TV+  +L 
Sbjct: 148 AAGPETAGFLAP---------------------NPSSGNDGSSLIPTSF--TTVLSAVLF 177

[Close]
BLAST of CmoCh02G018380 vs. Swiss-Prot
Match: LTPG2_ARATH (Non-specific lipid transfer protein GPI-anchored 2 OS=Arabidopsis thaliana GN=LTPG2 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.1e-11
Identity = 44/111 (39.64%), Postives = 62/111 (55.86%), Query Frame = 1 

Query: 27  CTTALISLSPCLTYIT-GSGGSSTSTAPSSSCCSRLATVVQSQPQCLCSALNGGAAVSLG 86
           C   L++++ CL+Y+T G GG +    P  +CC  LA +V+S PQCLC  L+G  A  LG
Sbjct: 38  CMANLMNMTGCLSYVTVGEGGGAAK--PDKTCCPALAGLVESSPQCLCYLLSGDMAAQLG 97

Query: 87  VTINRTRALGLPAACSVQTPPPSRCNDANGAAAAP------AISPISSPGN 131
           + I++ +AL LP  C V TP PS C+       AP        SP  +PG+
Sbjct: 98  IKIDKAKALKLPGVCGVITPDPSLCSLFGIPVGAPVAMGDEGASPAYAPGS 146

[Close]
BLAST of CmoCh02G018380 vs. TrEMBL
Match: A0A0A0KGC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G410100 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-41
Identity = 114/194 (58.76%), Postives = 135/194 (69.59%), Query Frame = 1 

Query: 9   LLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLATVVQSQ 68
           +++V   MSH S+ QS GCTTALI+LSPCLTYI  + G++TS  PSSSCCSRLATV+QS+
Sbjct: 13  VVVVGLSMSHSSLGQSGGCTTALITLSPCLTYINAAAGTTTSNTPSSSCCSRLATVLQSK 72

Query: 69  PQCLCSALN-GGAAVSLGVTINRTRALGLPAACSVQTPPPSRCNDANGAAAAPAISPISS 128
           P+CLCSAL+ GGAA SLGVTIN+TRAL LPAAC +QTPPPSRCN      AAP +SP+SS
Sbjct: 73  PRCLCSALSGGGAAASLGVTINQTRALQLPAACRLQTPPPSRCN----GVAAPTVSPVSS 132

Query: 129 PGNSPSDDEELGEA-PTTRETT------FPSEVDS-KYVPNNRRNPESGGRSLIKTP--F 188
           P NSP D+EE GEA PTT  TT      FPS + S + VP     P  GG SLI      
Sbjct: 133 PENSP-DEEEDGEARPTTWTTTTWDQPSFPSTIGSDENVPITGGVPSDGGHSLINFAGLV 192

Query: 189 YDLTVVGLLLTALL 192
           Y L  + +L   LL
Sbjct: 193 YHLITLNILFILLL 201

[Close]
BLAST of CmoCh02G018380 vs. TrEMBL
Match: B9SFJ0_RICCO (Lipid binding protein, putative OS=Ricinus communis GN=RCOM_0646560 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.9e-29
Identity = 86/158 (54.43%), Postives = 110/158 (69.62%), Query Frame = 1 

Query: 3   IESALFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLA 62
           +E   FL+LV   + H +VAQS GCT+AL+ L+PCL Y+TG+     S+ PSSSCCS+LA
Sbjct: 6   VEMIAFLVLVMM-ICHGAVAQS-GCTSALMGLAPCLNYVTGN-----SSTPSSSCCSQLA 65

Query: 63  TVVQSQPQCLCSALNGGAAVSLGVTINRTRALGLPAACSVQTPPPSRCNDA-NGAAAAPA 122
           TVVQSQPQCLC+ LNGG + SLG+TIN+T AL LP AC+VQTPP S+CN A NG A +P 
Sbjct: 66  TVVQSQPQCLCAMLNGGGS-SLGITINQTLALSLPGACNVQTPPVSQCNAANNGPATSPI 125

Query: 123 ISPISSPGNSPSDDEELGEAPTTRETTFPSEVDSKYVP 160
            SP++ P +S  D  E    P+    +FP+   SK VP
Sbjct: 126 GSPLTPPADSSDDTPETPNTPSI--PSFPAGGGSKIVP 153

[Close]
BLAST of CmoCh02G018380 vs. TrEMBL
Match: A0A061DQP4_THECC (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein OS=Theobroma cacao GN=TCM_004321 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 8.4e-29
Identity = 89/185 (48.11%), Postives = 115/185 (62.16%), Query Frame = 1 

Query: 7   LFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLATVVQ 66
           L L LV  GM        +GCT+ L+ L+PCL YI G+     ST P+SSCCS+L++VVQ
Sbjct: 8   LGLALVLVGMLCYKATAQSGCTSVLMGLAPCLNYIAGN-----STTPASSCCSQLSSVVQ 67

Query: 67  SQPQCLCSALNGGAAVSLGVTINRTRALGLPAACSVQTPPPSRCNDANGAAAAPAISPIS 126
           SQPQCLCSAL+GG + SLG+TIN+TRAL LP AC+VQTPP SRCN ANG AA P  S  S
Sbjct: 68  SQPQCLCSALSGGGS-SLGITINQTRALSLPGACNVQTPPVSRCNAANGPAAPPVSSTAS 127

Query: 127 SPGNSPSDDEELGEAPTTRETTFPSEVDSKYVPNNRRNPESGGRSLIKTPFYDLTVVGLL 186
            P +  S DE      T+   + PS   SK VP    +  +G  +++K P   LT+  L 
Sbjct: 128 PPAD--SSDETPDTPATSSMPSIPSGTGSKTVPTKENSISNG--NIMKMPL-TLTLFTLF 181

Query: 187 LTALL 192
           + + +
Sbjct: 188 IASYI 181

[Close]
BLAST of CmoCh02G018380 vs. TrEMBL
Match: A0A067FRD1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030070mg PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.2e-28
Identity = 94/188 (50.00%), Postives = 121/188 (64.36%), Query Frame = 1 

Query: 3   IESALFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLA 62
           IE  L L+LV   + H +VAQS GCTT L+ L+PCL YITG+     S+ PSSSCCS+LA
Sbjct: 6   IELCLVLVLVTM-LFHGAVAQS-GCTTVLVGLAPCLNYITGN-----SSTPSSSCCSQLA 65

Query: 63  TVVQSQPQCLCSALNGGAAVSLGVTINRTRALGLPAACSVQTPPPSRCNDANGAAAAPAI 122
           +VVQSQP+CLCS LN G + SLG+ IN+++AL LP AC+VQTPP S+CN  NG    PA 
Sbjct: 66  SVVQSQPRCLCSVLNSGGS-SLGIAINQSQALALPGACNVQTPPASQCNTVNG----PAS 125

Query: 123 SPISSPGNSPSDDEELGEAPTTRE-TTFPSEVDSKYVPNNRRNPESGGRSLIKTPFYDLT 182
           SP+S P +S    +E+ E PT+    + PS   SK VP    +  SG  S+I  P +  T
Sbjct: 126 SPVSPPADS---SDEMQETPTSPPMPSIPSGSGSKTVPTADGSSSSG--SIITMPLH-FT 175

Query: 183 VVGLLLTA 190
           V  L L +
Sbjct: 186 VFILFLAS 175

[Close]
BLAST of CmoCh02G018380 vs. TrEMBL
Match: A0A0D2PLJ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G003700 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 7.1e-28
Identity = 82/166 (49.40%), Postives = 111/166 (66.87%), Query Frame = 1 

Query: 3   IESALFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLA 62
           ++  L L+ V     ++++AQS GCT+ L+ L+PCL YIT    S+++T PSS+CCS+L+
Sbjct: 6   VKLGLALVFVTMLCGYKAMAQS-GCTSVLLGLAPCLNYIT----SNSTTTPSSTCCSQLS 65

Query: 63  TVVQSQPQCLCSALNGGAAVSLGVTINRTRALGLPAACSVQTPPPSRCNDANGAAAAPAI 122
           +VVQSQPQCLCS LNGG + SLGVTIN+TRAL LP AC+VQTPP SRCN ANG A+ P  
Sbjct: 66  SVVQSQPQCLCSVLNGGGS-SLGVTINQTRALSLPGACNVQTPPVSRCNAANGPASPPVS 125

Query: 123 SPISSPGNSPSDDEELGEAPTTRETTFPSEVDSKYVPNNRRNPESG 169
           S +S   +S  D  +   + T+   + PS   SK VP    +  +G
Sbjct: 126 SAVSPSADSSDDTPD--TSVTSSMPSIPSGTGSKTVPTTEGSISNG 163

[Close]
BLAST of CmoCh02G018380 vs. TAIR10
Match: AT3G22600.1 (AT3G22600.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 114.4 bits (285), Expect = 7.8e-26
Identity = 63/125 (50.40%), Postives = 83/125 (66.40%), Query Frame = 1 

Query: 7   LFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLATVVQ 66
           +FL +    MS   V+  + CT ALIS+SPCL YITG+     ST+P+  CC++L+ VVQ
Sbjct: 8   VFLTVFMAVMSSTMVSAQSSCTNALISMSPCLNYITGN-----STSPNQQCCNQLSRVVQ 67

Query: 67  SQPQCLCSALNGGAAVSLGVTINRTRALGLPAACSVQTPPPSRCNDANGAAAAPAISPIS 126
           S P CLC  LNGG +  LG+ +N+T+ALGLP AC+VQTPP SRCN   G   + + SP  
Sbjct: 68  SSPDCLCQVLNGGGS-QLGINVNQTQALGLPRACNVQTPPVSRCNTGGGGGGSTSDSPAE 126

Query: 127 SPGNS 132
           SP +S
Sbjct: 128 SPNSS 126

[Close]
BLAST of CmoCh02G018380 vs. TAIR10
Match: AT2G48130.1 (AT2G48130.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-20
Identity = 60/127 (47.24%), Postives = 79/127 (62.20%), Query Frame = 1 

Query: 8   FLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLATVVQS 67
           F+ LVA   S      S+ C + L +LSPCL+YITG+     ST PS  CCSRL +V++S
Sbjct: 11  FVALVAALWSVTKAQPSSSCVSTLTTLSPCLSYITGN-----STTPSQPCCSRLDSVIKS 70

Query: 68  QPQCLCSALNGGAAVSLGVTINRTRALGLPAACSVQTPPPSRCNDANGAAAAPAISPISS 127
            PQC+CSA+N     ++G+ INRT+AL LP AC++QTPP ++CN A G  A P   P  S
Sbjct: 71  SPQCICSAVNSPIP-NIGLNINRTQALQLPNACNIQTPPLTQCNAATGPTAQP---PAPS 128

Query: 128 PGNSPSD 135
           P     D
Sbjct: 131 PTEKTPD 128

[Close]
BLAST of CmoCh02G018380 vs. TAIR10
Match: AT1G03103.1 (AT1G03103.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 94.7 bits (234), Expect = 6.4e-20
Identity = 60/139 (43.17%), Postives = 78/139 (56.12%), Query Frame = 1 

Query: 6   ALFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLATVV 65
           A+  L++A  +   +    AGC   L SLSPCL Y+ G      S++PS SCC + +TVV
Sbjct: 4   AILALVIATFLYGGATTVQAGCRDTLTSLSPCLYYLNGG-----SSSPSWSCCRQFSTVV 63

Query: 66  QSQPQCLCSALNGGAAVSLGVTINRTRALGLPAACSVQTPPPSRCN-DANGAAAAPAISP 125
           QS P+CLCS +N   +   G   NRT AL LP AC+VQTP PS CN   N     PA +P
Sbjct: 64  QSSPECLCSVVNSNESSFYGFKFNRTLALNLPTACNVQTPSPSLCNTGGNVPTTLPANTP 123

Query: 126 ISSPGNSPSDDEELGEAPT 144
           + SP ++PS       A T
Sbjct: 124 VGSPRSAPSPSGTTSPANT 137

[Close]
BLAST of CmoCh02G018380 vs. TAIR10
Match: AT4G14815.1 (AT4G14815.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 82.4 bits (202), Expect = 3.3e-16
Identity = 44/106 (41.51%), Postives = 66/106 (62.26%), Query Frame = 1 

Query: 9   LLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLATVVQSQ 68
           +L +A       V+  + CT  LIS++PCL++IT       ++ PS  CC++LA VV+  
Sbjct: 8   ILFIALMRVMSIVSAQSSCTNVLISMAPCLSFIT-----QNTSLPSQQCCNQLAHVVRYS 67

Query: 69  PQCLCSALNGGAAVSLGVTINRTRALGLPAACSVQTPPPSRCNDAN 115
            +CLC  L+GG +  LG+ +N T+AL LP AC V+TPP SRC+  +
Sbjct: 68  SECLCQVLDGGGS-QLGINVNETQALALPKACHVETPPASRCHSGS 107

[Close]
BLAST of CmoCh02G018380 vs. TAIR10
Match: AT4G08670.1 (AT4G08670.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-14
Identity = 55/168 (32.74%), Postives = 87/168 (51.79%), Query Frame = 1 

Query: 24  SAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLATVVQSQPQCLCSALNGGAAVS 83
           S+ C+T + S+  CL Y+   G  S  T P  SCC+ + TV+Q  PQC+C+ L   +A  
Sbjct: 45  SSDCSTVIYSMMDCLGYL---GVGSNETKPEKSCCTGIETVLQYNPQCICAGL--VSAGE 104

Query: 84  LGVTINRTRALGLPAACSVQTPPPSRCNDANGAAAAPAISPISSPGNSPSDDEELGEAPT 143
           +G+ +N TRAL  P AC +   PP  C      A  P  SP+S    +P+      ++P 
Sbjct: 105 MGIELNSTRALATPKACKLSIAPP-HCGIITSGATTPGASPVSPSAGAPTTSPSAAKSPE 164

Query: 144 TRETTFPS-EVDSKYVPNNRRNPESGGRSLIKTPFYDLTVVGLLLTAL 191
           T  T+  S E  S   P    +P S G +++  P   LT+V ++++++
Sbjct: 165 TSATSPSSDETPSMTAP----SPSSSGTNILSVP--ALTIVFVIVSSV 200

[Close]
BLAST of CmoCh02G018380 vs. NCBI nr
Match: gi|659097100|ref|XP_008449442.1| (PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Cucumis melo])

HSP 1 Score: 189.9 bits (481), Expect = 4.1e-45
Identity = 112/185 (60.54%), Postives = 140/185 (75.68%), Query Frame = 1 

Query: 7   LFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLATVVQ 66
           L  ++V   MSH S+ QS GCTTALI+LSPCLTYI  + G++++T PSSSCCSRLAT+VQ
Sbjct: 10  LVSVVVGLSMSHSSLGQSGGCTTALITLSPCLTYINAAAGTASNT-PSSSCCSRLATIVQ 69

Query: 67  SQPQCLCSALN-GGAAVSLGVTINRTRALGLPAACSVQTPPPSRCNDANG-AAAAPAISP 126
           SQP+CLCSAL+ GGAA SLGVTIN+TRAL LPAAC +QTPPPSRCN+ N    A P +SP
Sbjct: 70  SQPRCLCSALSGGGAAASLGVTINQTRALQLPAACRLQTPPPSRCNENNNEGLATPTVSP 129

Query: 127 ISSPGNSPSDDEELGEAPTT-----RETTFPSEVDSKYVPNNRRNPESGGRSL-IKTPFY 184
           +SSP NSP D+EE GEAP+T      +T+FPS  DS+ VP     P  GG+SL I +PFY
Sbjct: 130 VSSPENSP-DEEEDGEAPSTWTTTWDQTSFPSTTDSETVPITGGIPSDGGQSLMINSPFY 189

[Close]
BLAST of CmoCh02G018380 vs. NCBI nr
Match: gi|778716223|ref|XP_004140225.2| (PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 4.3e-42
Identity = 115/196 (58.67%), Postives = 137/196 (69.90%), Query Frame = 1 

Query: 9   LLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLATVVQSQ 68
           +++V   MSH S+ QS GCTTALI+LSPCLTYI  + G++TS  PSSSCCSRLATV+QS+
Sbjct: 13  VVVVGLSMSHSSLGQSGGCTTALITLSPCLTYINAAAGTTTSNTPSSSCCSRLATVLQSK 72

Query: 69  PQCLCSALN-GGAAVSLGVTINRTRALGLPAACSVQTPPPSRCNDANG--AAAAPAISPI 128
           P+CLCSAL+ GGAA SLGVTIN+TRAL LPAAC +QTPPPSRCND +     AAP +SP+
Sbjct: 73  PRCLCSALSGGGAAASLGVTINQTRALQLPAACRLQTPPPSRCNDNSNDEGVAAPTVSPV 132

Query: 129 SSPGNSPSDDEELGEA-PTTRETT------FPSEVDS-KYVPNNRRNPESGGRSLIKTP- 188
           SSP NSP D+EE GEA PTT  TT      FPS + S + VP     P  GG SLI    
Sbjct: 133 SSPENSP-DEEEDGEARPTTWTTTTWDQPSFPSTIGSDENVPITGGVPSDGGHSLINFAG 192

Query: 189 -FYDLTVVGLLLTALL 192
             Y L  + +L   LL
Sbjct: 193 LVYHLITLNILFILLL 207

[Close]
BLAST of CmoCh02G018380 vs. NCBI nr
Match: gi|700192700|gb|KGN47904.1| (hypothetical protein Csa_6G410100 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 1.6e-41
Identity = 114/194 (58.76%), Postives = 135/194 (69.59%), Query Frame = 1 

Query: 9   LLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLATVVQSQ 68
           +++V   MSH S+ QS GCTTALI+LSPCLTYI  + G++TS  PSSSCCSRLATV+QS+
Sbjct: 13  VVVVGLSMSHSSLGQSGGCTTALITLSPCLTYINAAAGTTTSNTPSSSCCSRLATVLQSK 72

Query: 69  PQCLCSALN-GGAAVSLGVTINRTRALGLPAACSVQTPPPSRCNDANGAAAAPAISPISS 128
           P+CLCSAL+ GGAA SLGVTIN+TRAL LPAAC +QTPPPSRCN      AAP +SP+SS
Sbjct: 73  PRCLCSALSGGGAAASLGVTINQTRALQLPAACRLQTPPPSRCN----GVAAPTVSPVSS 132

Query: 129 PGNSPSDDEELGEA-PTTRETT------FPSEVDS-KYVPNNRRNPESGGRSLIKTP--F 188
           P NSP D+EE GEA PTT  TT      FPS + S + VP     P  GG SLI      
Sbjct: 133 PENSP-DEEEDGEARPTTWTTTTWDQPSFPSTIGSDENVPITGGVPSDGGHSLINFAGLV 192

Query: 189 YDLTVVGLLLTALL 192
           Y L  + +L   LL
Sbjct: 193 YHLITLNILFILLL 201

[Close]
BLAST of CmoCh02G018380 vs. NCBI nr
Match: gi|255567560|ref|XP_002524759.1| (PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Ricinus communis])

HSP 1 Score: 136.0 bits (341), Expect = 7.1e-29
Identity = 86/158 (54.43%), Postives = 110/158 (69.62%), Query Frame = 1 

Query: 3   IESALFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLA 62
           +E   FL+LV   + H +VAQS GCT+AL+ L+PCL Y+TG+     S+ PSSSCCS+LA
Sbjct: 6   VEMIAFLVLVMM-ICHGAVAQS-GCTSALMGLAPCLNYVTGN-----SSTPSSSCCSQLA 65

Query: 63  TVVQSQPQCLCSALNGGAAVSLGVTINRTRALGLPAACSVQTPPPSRCNDA-NGAAAAPA 122
           TVVQSQPQCLC+ LNGG + SLG+TIN+T AL LP AC+VQTPP S+CN A NG A +P 
Sbjct: 66  TVVQSQPQCLCAMLNGGGS-SLGITINQTLALSLPGACNVQTPPVSQCNAANNGPATSPI 125

Query: 123 ISPISSPGNSPSDDEELGEAPTTRETTFPSEVDSKYVP 160
            SP++ P +S  D  E    P+    +FP+   SK VP
Sbjct: 126 GSPLTPPADSSDDTPETPNTPSI--PSFPAGGGSKIVP 153

[Close]
BLAST of CmoCh02G018380 vs. NCBI nr
Match: gi|1009147644|ref|XP_015891522.1| (PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-28
Identity = 82/164 (50.00%), Postives = 106/164 (64.63%), Query Frame = 1 

Query: 9   LLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLATVVQSQ 68
           ++LV   +  +       CT  +ISLSPCL Y+TG+   S++T PSSSCCS+LA +VQSQ
Sbjct: 10  IVLVLVTLFCDGAVAQLSCTRVVISLSPCLNYVTGN---SSNTPPSSSCCSQLANIVQSQ 69

Query: 69  PQCLCSALNGGAAVSLGVTINRTRALGLPAACSVQTPPPSRCNDANGAAAAPAISPISSP 128
           PQCLCS LNGG + SLGVTIN+T+AL LP+AC+VQTPP S CN ANG            P
Sbjct: 70  PQCLCSVLNGGGS-SLGVTINQTQALSLPSACNVQTPPASHCNGANG------------P 129

Query: 129 GNSPSDDEELGEAPTTRETTFPSEVDSKYVPNNRRNPESGGRSL 173
            NSP+ D   GE P ++  +F S  +SK VP  R +  S GR++
Sbjct: 130 TNSPAADTSSGETPESK-PSFQSATESKAVPIGRADGASKGRAM 156

The following BLAST results are available for this feature:
BLAST of CmoCh02G018380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NLTL2_ARATH2.3e-1133.33Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thalia... [more]
NLTL5_ARATH5.1e-1134.62Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thalia... [more]
LTPG2_ARATH5.1e-1139.64Non-specific lipid transfer protein GPI-anchored 2 OS=Arabidopsis thaliana GN=LT... [more]
BLAST of CmoCh02G018380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGC1_CUCSA1.1e-4158.76Uncharacterized protein OS=Cucumis sativus GN=Csa_6G410100 PE=4 SV=1[more]
B9SFJ0_RICCO4.9e-2954.43Lipid binding protein, putative OS=Ricinus communis GN=RCOM_0646560 PE=3 SV=1[more]
A0A061DQP4_THECC8.4e-2948.11Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
A0A067FRD1_CITSI3.2e-2850.00Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030070mg PE=3 SV=1[more]
A0A0D2PLJ6_GOSRA7.1e-2849.40Uncharacterized protein OS=Gossypium raimondii GN=B456_008G003700 PE=3 SV=1[more]
BLAST of CmoCh02G018380 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G22600.17.8e-2650.40 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi... [more]
AT2G48130.11.7e-2047.24 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi... [more]
AT1G03103.16.4e-2043.17 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi... [more]
AT4G14815.13.3e-1641.51 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi... [more]
AT4G08670.12.4e-1432.74 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi... [more]
BLAST of CmoCh02G018380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659097100|ref|XP_008449442.1|4.1e-4560.54PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Cucumis m... [more]
gi|778716223|ref|XP_004140225.2|4.3e-4258.67PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Cucumis s... [more]
gi|700192700|gb|KGN47904.1|1.6e-4158.76hypothetical protein Csa_6G410100 [Cucumis sativus][more]
gi|255567560|ref|XP_002524759.1|7.1e-2954.43PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Ricinus c... [more]
gi|1009147644|ref|XP_015891522.1|1.2e-2850.00PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 isoform X1... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016140Bifunc_inhib/LTP/seed_store
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006869 lipid transport
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0008289 lipid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G018380.1CmoCh02G018380.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainPFAMPF14368LTP_2coord: 9..110
score: 1.2
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainSMARTSM00499aai_6coord: 27..110
score: 3.
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainunknownSSF47699Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumincoord: 26..111
score: 7.98
NoneNo IPR availableGENE3DG3DSA:1.10.110.10coord: 26..111
score: 2.1
NoneNo IPR availablePANTHERPTHR33044FAMILY NOT NAMEDcoord: 6..160
score: 2.6
NoneNo IPR availablePANTHERPTHR33044:SF23BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATEDcoord: 6..160
score: 2.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G018380Cucsa.254430Cucumber (Gy14) v1cgycmoB0714
CmoCh02G018380CmaCh02G017920Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G018380CmaCh06G013970Cucurbita maxima (Rimu)cmacmoB819
CmoCh02G018380Cla021611Watermelon (97103) v1cmowmB560
CmoCh02G018380Cla006045Watermelon (97103) v1cmowmB551
CmoCh02G018380Csa3G146490Cucumber (Chinese Long) v2cmocuB588
CmoCh02G018380MELO3C006519Melon (DHL92) v3.5.1cmomeB569
CmoCh02G018380ClCG05G005060Watermelon (Charleston Gray)cmowcgB559
CmoCh02G018380ClCG06G006310Watermelon (Charleston Gray)cmowcgB562
CmoCh02G018380ClCG07G000370Watermelon (Charleston Gray)cmowcgB566
CmoCh02G018380CSPI03G12980Wild cucumber (PI 183967)cmocpiB591
CmoCh02G018380Lsi05G016180Bottle gourd (USVL1VR-Ls)cmolsiB569
CmoCh02G018380Lsi05G009440Bottle gourd (USVL1VR-Ls)cmolsiB565
CmoCh02G018380Cp4.1LG05g01640Cucurbita pepo (Zucchini)cmocpeB596
CmoCh02G018380Cp4.1LG03g10640Cucurbita pepo (Zucchini)cmocpeB590
CmoCh02G018380MELO3C006519.2Melon (DHL92) v3.6.1cmomedB648
CmoCh02G018380CsaV3_3G013120Cucumber (Chinese Long) v3cmocucB0695
CmoCh02G018380Cla97C07G128640Watermelon (97103) v2cmowmbB631
CmoCh02G018380Bhi05G000230Wax gourdcmowgoB0725
CmoCh02G018380Bhi01G000571Wax gourdcmowgoB0718
CmoCh02G018380CsGy3G013130Cucumber (Gy14) v2cgybcmoB362
CmoCh02G018380Carg28057Silver-seed gourdcarcmoB0801
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh02G018380CmoCh14G017620Cucurbita moschata (Rifu)cmocmoB213
CmoCh02G018380CmoCh06G014000Cucurbita moschata (Rifu)cmocmoB439
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G018380Cucurbita moschata (Rifu)cmocmoB384
CmoCh02G018380Cucurbita moschata (Rifu)cmocmoB387
CmoCh02G018380Cucurbita maxima (Rimu)cmacmoB521
CmoCh02G018380Cucurbita maxima (Rimu)cmacmoB523
CmoCh02G018380Wild cucumber (PI 183967)cmocpiB625
CmoCh02G018380Cucumber (Chinese Long) v2cmocuB618
CmoCh02G018380Melon (DHL92) v3.5.1cmomeB564
CmoCh02G018380Cucurbita pepo (Zucchini)cmocpeB561
CmoCh02G018380Cucurbita pepo (Zucchini)cmocpeB564
CmoCh02G018380Cucumber (Gy14) v2cgybcmoB797
CmoCh02G018380Melon (DHL92) v3.6.1cmomedB645
CmoCh02G018380Silver-seed gourdcarcmoB1022
CmoCh02G018380Silver-seed gourdcarcmoB1023
CmoCh02G018380Cucumber (Chinese Long) v3cmocucB0739