CmoCh02G014690 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G014690
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RING finger family protein
Location	Cmo_Chr02 : 8623104 .. 8623640 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTTCCCTGCAAGCTACACTGAGCTGCTTCTCCCGAAGCTCTTCATCCACGTACTCTCCTTACTCGGCTTCCTCAGGAAGCTCATCTCCCTCTTATTTTGCCTTCTAGGGCTCCAGGATTTTCTCGAACCGGACATTCCTTGGTCTAATCATTCTGATTCTTTTCCGACGGGACCATTGACGGACCTCGATCCTCTTTCCGCTGCTGTTCTCCGTGAGATTCTTCCTGTCGTCAGATTCTCTGAACTTCTGGATCCGCCGGAGAGCTGCGCTGTTTGTCTCTACGAGTTCGAGACCGACGACGAGATCCGCCGCCTCGCGAACTGTCGCCACATCTTCCACCGCGGATGCCTCGATCGGTGGATCGGTTATGGTCAGAGGACCTGCCCGCTGTGCCGGACGGTGTTCATTCCGCCCGATTTGCGGACTGGTGGTTGTAATTTTGACGATAGGGCTTGGGAGGATTCGGAACTCTTCGAAGCACTCCACACTGATTCTTCTTCATCCTCGACGCTTCTCAGCGCTGGTTTGTAG

mRNA sequence

ATGGGCTTCCCTGCAAGCTACACTGAGCTGCTTCTCCCGAAGCTCTTCATCCACGTACTCTCCTTACTCGGCTTCCTCAGGAAGCTCATCTCCCTCTTATTTTGCCTTCTAGGGCTCCAGGATTTTCTCGAACCGGACATTCCTTGGTCTAATCATTCTGATTCTTTTCCGACGGGACCATTGACGGACCTCGATCCTCTTTCCGCTGCTGTTCTCCGTGAGATTCTTCCTGTCGTCAGATTCTCTGAACTTCTGGATCCGCCGGAGAGCTGCGCTGTTTGTCTCTACGAGTTCGAGACCGACGACGAGATCCGCCGCCTCGCGAACTGTCGCCACATCTTCCACCGCGGATGCCTCGATCGGTGGATCGGTTATGGTCAGAGGACCTGCCCGCTGTGCCGGACGGTGTTCATTCCGCCCGATTTGCGGACTGGTGGTTGTAATTTTGACGATAGGGCTTGGGAGGATTCGGAACTCTTCGAAGCACTCCACACTGATTCTTCTTCATCCTCGACGCTTCTCAGCGCTGGTTTGTAG

Coding sequence (CDS)

ATGGGCTTCCCTGCAAGCTACACTGAGCTGCTTCTCCCGAAGCTCTTCATCCACGTACTCTCCTTACTCGGCTTCCTCAGGAAGCTCATCTCCCTCTTATTTTGCCTTCTAGGGCTCCAGGATTTTCTCGAACCGGACATTCCTTGGTCTAATCATTCTGATTCTTTTCCGACGGGACCATTGACGGACCTCGATCCTCTTTCCGCTGCTGTTCTCCGTGAGATTCTTCCTGTCGTCAGATTCTCTGAACTTCTGGATCCGCCGGAGAGCTGCGCTGTTTGTCTCTACGAGTTCGAGACCGACGACGAGATCCGCCGCCTCGCGAACTGTCGCCACATCTTCCACCGCGGATGCCTCGATCGGTGGATCGGTTATGGTCAGAGGACCTGCCCGCTGTGCCGGACGGTGTTCATTCCGCCCGATTTGCGGACTGGTGGTTGTAATTTTGACGATAGGGCTTGGGAGGATTCGGAACTCTTCGAAGCACTCCACACTGATTCTTCTTCATCCTCGACGCTTCTCAGCGCTGGTTTGTAG

Homology

[Close]

BLAST of CmoCh02G014690 vs. Swiss-Prot
Match: RHA1B_ARATH (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.9e-24
Identity = 58/146 (39.73%), Postives = 85/146 (58.22%), Query Frame = 1


Query: 1   MGFPASYTELLLPKLFIHVLSLLGFLRKLISLLFCLLGLQDFLEPDIPWSNHSDSFPTGP 60
           MG P  + EL +P   +  L ++GF R ++  L   +GL  FL+       H+++  + P
Sbjct: 1   MGLPTDFKELQIPGYVLKTLYVIGFFRDMVDALCPYIGLPSFLD-------HNETSRSDP 60

Query: 61  LTDLDPLSAAVLREILPVVRFSELL-DPPESCAVCLYEFETDDEIRRLANCRHIFHRGCL 120
                  SA +  E++PVVRFS+LL DP + C VCL +F +DD+IR+L  C H+FH  CL
Sbjct: 61  TRLALSTSATLANELIPVVRFSDLLTDPEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCL 120

Query: 121 DRWI-GYGQRTCPLCRTVFIPPDLRT 145
           DRWI    + TCP+CR  F+P +  T
Sbjct: 121 DRWIVDCNKITCPICRNRFLPEEKST 139

[Close]

BLAST of CmoCh02G014690 vs. Swiss-Prot
Match: RHA1A_ARATH (Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana GN=RHA1A PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.2e-23
Identity = 57/147 (38.78%), Postives = 86/147 (58.50%), Query Frame = 1


Query: 1   MGFPASY-TELLLPKLFIHVLSLLGFLRKLISLLFCLLGLQDFLEPDIPWSNHSDSFPTG 60
           MG P  + TEL +P   + +L ++GF R ++  L   +GL  FL+       H+++    
Sbjct: 1   MGLPEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLD-------HNETSAPD 60

Query: 61  PLTDLDPLSAAVLREILPVVRFSEL-LDPPESCAVCLYEFETDDEIRRLANCRHIFHRGC 120
                   SA++  E++PVVRFS+L  DP + C VCL +FE+DD++R+L  C H+FH  C
Sbjct: 61  LTRHALSTSASLANELIPVVRFSDLPTDPEDCCTVCLSDFESDDKVRQLPKCGHVFHHYC 120

Query: 121 LDRWI-GYGQRTCPLCRTVFIPPDLRT 145
           LDRWI  Y +  CP+CR  F+P +  T
Sbjct: 121 LDRWIVDYNKMKCPVCRHRFLPKEKYT 140

[Close]

BLAST of CmoCh02G014690 vs. Swiss-Prot
Match: YOF7_SCHPO (Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP4H10.07 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-11
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 1


Query: 89  ESCAVCLYEFETDDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRT 136
           E C VCL  FE +DE RRL  C H FHR C+D+W+   Q +CPLCRT
Sbjct: 523 ERCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCRT 569

[Close]

BLAST of CmoCh02G014690 vs. Swiss-Prot
Match: ATL5_ARATH (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-11
Identity = 46/123 (37.40%), Postives = 59/123 (47.97%), Query Frame = 1


Query: 57  PTGPLTDLDPLSAAVLREILPVVRFSELL--DPPESCAVCLYEFETDDEIRRLANCRHIF 116
           PT   + L PL   VL +I P+  +S      P E C+VCL EFE DDE R L  C H+F
Sbjct: 78  PTQSSSSLSPLDPTVLEKI-PIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVF 137

Query: 117 HRGCLDRWIGYGQRTCPLCRTVFIPPDLRT-----GGCNFDDRAWEDSELFEALHTDSSS 173
           H  C+D W    + +CPLCR    P    T            +  ED+E   +  +D S 
Sbjct: 138 HVDCIDTWF-RSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIEDTEAGSSSSSDESE 197

[Close]

BLAST of CmoCh02G014690 vs. Swiss-Prot
Match: ATL58_ARATH (RING-H2 finger protein ATL58 OS=Arabidopsis thaliana GN=ATL58 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.8e-11
Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = 1


Query: 57  PTGPLTDLDPLSAAVLREILPVVRFSELLDPPES-CAVCLYEFETDDEIRRLANCRHIFH 116
           P   L+ ++   +  LRE+LP+V F E     +S C+VCL +++ +D+++++  C+H FH
Sbjct: 65  PGNSLSTIELGLSKELREMLPIVVFKESFTVMDSQCSVCLGDYQPNDKLQQIPVCKHTFH 124

Query: 117 RGCLDRWIGYGQRTCPLCRTVFIP 140
             C+D W+     TCPLCR   IP
Sbjct: 125 MDCIDLWL-TSHTTCPLCRLALIP 147

[Close]

BLAST of CmoCh02G014690 vs. TrEMBL
Match: A0A0A0KQV2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152910 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 4.2e-83
Identity = 149/179 (83.24%), Postives = 162/179 (90.50%), Query Frame = 1


Query: 1   MGFPASYTELLLPKLFIHVLSLLGFLRKLISLLFCLLGLQDFLEPDIPWSNHSDSFPTGP 60
           MGFPA+YTELLLPKLFIH+LS LGFLRKLIS +F L GLQDFLEPDIPW N  DSFPT P
Sbjct: 1   MGFPATYTELLLPKLFIHLLSFLGFLRKLISFIFRLFGLQDFLEPDIPWPNPPDSFPTSP 60

Query: 61  LTDLDPLSAAVLREILPVVRFSELLDPPESCAVCLYEFETDDEIRRLANCRHIFHRGCLD 120
            T LDPLSAA+LREILPVV+FS+LLDPP+ CAVCLYEFE+DDEIRRLANCRHIFHRGCLD
Sbjct: 61  FTHLDPLSAALLREILPVVKFSDLLDPPDCCAVCLYEFESDDEIRRLANCRHIFHRGCLD 120

Query: 121 RWIGYGQRTCPLCRTVFIPPDLRT-GGCNFDDRAWEDSELFEALHTDSSSSSTLLSAGL 179
           RWIGYGQRTCPLCRTVFIPPDLR+ GGCNFDDR WEDSE+FE LH+DSSSS+ L + GL
Sbjct: 121 RWIGYGQRTCPLCRTVFIPPDLRSGGGCNFDDRLWEDSEIFEPLHSDSSSSNLLSTDGL 179

[Close]

BLAST of CmoCh02G014690 vs. TrEMBL
Match: M5WAZ7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012459mg PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.0e-53
Identity = 100/157 (63.69%), Postives = 122/157 (77.71%), Query Frame = 1


Query: 1   MGFPASYTELLLPKLFIHVLSLLGFLRKLISLLFCLLGLQDFLEPDIPWSNHSDSFPTGP 60
           MGFP  YTELLLPKLFIH LSLLG +RKLIS  F LLGLQDF++PD  W++     P  P
Sbjct: 1   MGFPVGYTELLLPKLFIHTLSLLGLIRKLISTFFSLLGLQDFIQPDNAWAD-----PPAP 60

Query: 61  LTDLDPLSAAVLREILPVVRFSELLDPPESCAVCLYEFETDDEIRRLANCRHIFHRGCLD 120
             +    SA ++REILPVV+FS+L+DPPESCAVCLYEFE++DEIRRL NCRHIFH+GC+D
Sbjct: 61  FPEFHSASAVLIREILPVVKFSDLVDPPESCAVCLYEFESEDEIRRLTNCRHIFHKGCVD 120

Query: 121 RWIGYGQRTCPLCRTVFIPPDLRTGGCNFDDRAWEDS 158
           RW+GY Q+TCPLCRT FI  D++    +F++R W  S
Sbjct: 121 RWVGYDQKTCPLCRTPFISDDMQG---DFNERLWAAS 149

[Close]

BLAST of CmoCh02G014690 vs. TrEMBL
Match: A0A0D2MY16_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G139600 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.9e-51
Identity = 98/161 (60.87%), Postives = 122/161 (75.78%), Query Frame = 1


Query: 1   MGFPASYTELLLPKLFIHVLSLLGFLRKLISLLFCLLGLQDFLEPDIPWSNHSDSFPTGP 60
           MGFP +Y+ELLLP+L +H LSLL +LRK IS+LF  LGL DFLEPDIPW  ++   P   
Sbjct: 1   MGFPVAYSELLLPRLLLHTLSLLAYLRKFISILFLYLGLPDFLEPDIPWREYA---PETH 60

Query: 61  LTDLDPLSAAVLREILPVVRFSELLDPPESCAVCLYEFETDDEIRRLANCRHIFHRGCLD 120
                P+SA ++RE+LPVV+FS+L+DPPESCAVCLY+FE  DEIRRL NCRHIFHR CLD
Sbjct: 61  HASAAPVSALLIRELLPVVKFSDLVDPPESCAVCLYDFEGQDEIRRLTNCRHIFHRSCLD 120

Query: 121 RWIGYGQRTCPLCRTVFIPPDLRTGGCNFDDRAWEDSELFE 162
           RW+GY Q+TCPLCRT F+P D++     F++R W  S + E
Sbjct: 121 RWMGYDQKTCPLCRTSFVPDDMQQ---TFNERLWAASGIPE 155

[Close]

BLAST of CmoCh02G014690 vs. TrEMBL
Match: V4SXV8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024600mg PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.6e-50
Identity = 101/166 (60.84%), Postives = 126/166 (75.90%), Query Frame = 1


Query: 1   MGFPASYTELLLPKLFIHVLSLLGFLRKLISLLFCLLGLQDFLEPDIPWSNHSDSFPTGP 60
           MGFP  Y+EL++PKL +H LS+LGF+RKLI++LF  LGLQDFLEPDI   + + +    P
Sbjct: 1   MGFPVVYSELIIPKLLLHTLSVLGFIRKLITILFTCLGLQDFLEPDIDAPDSARA--AAP 60

Query: 61  LTDLDPLSAAVLREILPVVRFSELLDPPESCAVCLYEFETDDEIRRLANCRHIFHRGCLD 120
           L  L  +SA ++REILPVV+FSEL+DPP+SCAVCLYEFE  DEIRRL NCRHIFHRGCLD
Sbjct: 61  LRPLS-VSALLIREILPVVKFSELVDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLD 120

Query: 121 RWIGYGQRTCPLCRTVFIPPDLRTGGCNFDDRAWEDSELFEALHTD 167
           RW+ Y Q+TCPLCRT FIP D++    +F++R W  S + E    D
Sbjct: 121 RWMAYDQKTCPLCRTPFIPDDMQD---SFNERLWAASGIPEFYDDD 160

[Close]

BLAST of CmoCh02G014690 vs. TrEMBL
Match: A0A067GLK3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030807mg PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.6e-50
Identity = 101/166 (60.84%), Postives = 126/166 (75.90%), Query Frame = 1


Query: 1   MGFPASYTELLLPKLFIHVLSLLGFLRKLISLLFCLLGLQDFLEPDIPWSNHSDSFPTGP 60
           MGFP  Y+EL++PKL +H LS+LGF+RKLI++LF  LGLQDFLEPDI   + + +    P
Sbjct: 1   MGFPVVYSELIIPKLLLHTLSVLGFIRKLITILFTCLGLQDFLEPDIDAPDSARA--AAP 60

Query: 61  LTDLDPLSAAVLREILPVVRFSELLDPPESCAVCLYEFETDDEIRRLANCRHIFHRGCLD 120
           L  L  +SA ++REILPVV+FSEL+DPP+SCAVCLYEFE  DEIRRL NCRHIFHRGCLD
Sbjct: 61  LRPLS-VSALLIREILPVVKFSELVDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLD 120

Query: 121 RWIGYGQRTCPLCRTVFIPPDLRTGGCNFDDRAWEDSELFEALHTD 167
           RW+ Y Q+TCPLCRT FIP D++    +F++R W  S + E    D
Sbjct: 121 RWMAYDQKTCPLCRTPFIPDDMQD---SFNERLWAASGIPEFYDDD 160

[Close]

BLAST of CmoCh02G014690 vs. TAIR10
Match: AT1G63840.1 (AT1G63840.1 RING/U-box superfamily protein)

HSP 1 Score: 184.5 bits (467), Expect = 5.7e-47
Identity = 100/173 (57.80%), Postives = 119/173 (68.79%), Query Frame = 1


Query: 1   MGFPASYTELLLPKLFIHVLSLLGFLRKLISLLFCLLGLQDFLEPDIPWSNHSDSFPTGP 60
           MGFP  Y+ELLLPK+F ++LS LG +RKLIS +F ++GL DFLEP+      S S+P  P
Sbjct: 1   MGFPVGYSELLLPKIFFYLLSFLGLIRKLISTMFKIIGLPDFLEPE----PVSTSWPDPP 60

Query: 61  LTDLDPLSAAVLR-EILPVVRFSELLDP-PESCAVCLYEFETDDEIRRLANCRHIFHRGC 120
            T   P SAA+L  E+LPVVRFS++  P  E CAVCLY+FE DDEIRRL NCRHIFHRGC
Sbjct: 61  PTLTKPDSAAILAGEMLPVVRFSDINRPESECCAVCLYDFENDDEIRRLTNCRHIFHRGC 120

Query: 121 LDRW-IGYGQRTCPLCRTVFIPPDLRTGGCNFDDRAWEDSELFEALHTDSSSS 171
           LDRW +GY Q TCPLCRT FIP  L+     F+ R W  S    +   D SSS
Sbjct: 121 LDRWMMGYNQMTCPLCRTQFIPDHLQ---LEFNQRLWSQSSAVSSQLLDESSS 166

[Close]

BLAST of CmoCh02G014690 vs. TAIR10
Match: AT3G61460.1 (AT3G61460.1 brassinosteroid-responsive RING-H2)

HSP 1 Score: 177.9 bits (450), Expect = 5.3e-45
Identity = 86/161 (53.42%), Postives = 111/161 (68.94%), Query Frame = 1


Query: 1   MGFPASYTELLLPKLFIHVLSLLGFLRKLISLLFCLLGLQDFLEPDIPWSNHSDSFPTGP 60
           MGFP  YTE+ LPKLF+  LS+LGF+R ++  +F  LGL DFLE D  W +++ S+PT  
Sbjct: 1   MGFPVGYTEVFLPKLFVQTLSILGFIRTIVFSIFRFLGLSDFLEMDQTWPDYT-SYPTRI 60

Query: 61  LTDLDPLSAAVLREILPVVRFSELL----DPPESCAVCLYEFETDDEIRRLANCRHIFHR 120
                P SA ++REILPV++F EL     D PE+CAVCLYEFE + EIR L NCRHIFHR
Sbjct: 61  PETRSPFSALLIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHR 120

Query: 121 GCLDRWIGYGQRTCPLCRTVFIPPDLRTGGCNFDDRAWEDS 158
            CLDRW+ + Q+TCPLCRT F+P +++     F+ R W  S
Sbjct: 121 SCLDRWMDHDQKTCPLCRTPFVPDEMQE---EFNQRLWAAS 157

[Close]

BLAST of CmoCh02G014690 vs. TAIR10
Match: AT5G41400.1 (AT5G41400.1 RING/U-box superfamily protein)

HSP 1 Score: 168.3 bits (425), Expect = 4.2e-42
Identity = 92/174 (52.87%), Postives = 112/174 (64.37%), Query Frame = 1


Query: 1   MGFPASYTELLLPKLFIHVLSLLGFLRKLISLLFCLLGLQDFLEPDIPWSNHSDSFPTGP 60
           MG+P  YTELLLP++F+H+LSLLG +R LI   F +LGL DFLE D   S+ S   P   
Sbjct: 1   MGYPVGYTELLLPRIFLHLLSLLGLIRTLIDTGFRILGLPDFLESDPVSSSSSWLEPPYM 60

Query: 61  LTDLD---------PLSAAVLREILPVVRFSELLDP-----PESCAVCLYEFETDDEIRR 120
            T            P++A +  EILPV+RFSEL  P      + CAVCL+EFE DDEIRR
Sbjct: 61  STAAHHHQESSFFFPVAARLAGEILPVIRFSELTRPGFGSGSDCCAVCLHEFENDDEIRR 120

Query: 121 LANCRHIFHRGCLDRW-IGYGQRTCPLCRTVFIPPDLRTGGCNFDDRAWEDSEL 160
           L NC+HIFHR CLDRW +GY Q TCPLCRT FI  +L+     F+ R W +SEL
Sbjct: 121 LTNCQHIFHRSCLDRWMMGYNQMTCPLCRTPFISDELQVA---FNQRVWSESEL 171

[Close]

BLAST of CmoCh02G014690 vs. TAIR10
Match: AT4G11360.1 (AT4G11360.1 RING-H2 finger A1B)

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-25
Identity = 58/146 (39.73%), Postives = 85/146 (58.22%), Query Frame = 1


Query: 1   MGFPASYTELLLPKLFIHVLSLLGFLRKLISLLFCLLGLQDFLEPDIPWSNHSDSFPTGP 60
           MG P  + EL +P   +  L ++GF R ++  L   +GL  FL+       H+++  + P
Sbjct: 1   MGLPTDFKELQIPGYVLKTLYVIGFFRDMVDALCPYIGLPSFLD-------HNETSRSDP 60

Query: 61  LTDLDPLSAAVLREILPVVRFSELL-DPPESCAVCLYEFETDDEIRRLANCRHIFHRGCL 120
                  SA +  E++PVVRFS+LL DP + C VCL +F +DD+IR+L  C H+FH  CL
Sbjct: 61  TRLALSTSATLANELIPVVRFSDLLTDPEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCL 120

Query: 121 DRWI-GYGQRTCPLCRTVFIPPDLRT 145
           DRWI    + TCP+CR  F+P +  T
Sbjct: 121 DRWIVDCNKITCPICRNRFLPEEKST 139

[Close]

BLAST of CmoCh02G014690 vs. TAIR10
Match: AT4G11370.1 (AT4G11370.1 RING-H2 finger A1A)

HSP 1 Score: 109.8 bits (273), Expect = 1.8e-24
Identity = 57/147 (38.78%), Postives = 86/147 (58.50%), Query Frame = 1


Query: 1   MGFPASY-TELLLPKLFIHVLSLLGFLRKLISLLFCLLGLQDFLEPDIPWSNHSDSFPTG 60
           MG P  + TEL +P   + +L ++GF R ++  L   +GL  FL+       H+++    
Sbjct: 1   MGLPEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLD-------HNETSAPD 60

Query: 61  PLTDLDPLSAAVLREILPVVRFSEL-LDPPESCAVCLYEFETDDEIRRLANCRHIFHRGC 120
                   SA++  E++PVVRFS+L  DP + C VCL +FE+DD++R+L  C H+FH  C
Sbjct: 61  LTRHALSTSASLANELIPVVRFSDLPTDPEDCCTVCLSDFESDDKVRQLPKCGHVFHHYC 120

Query: 121 LDRWI-GYGQRTCPLCRTVFIPPDLRT 145
           LDRWI  Y +  CP+CR  F+P +  T
Sbjct: 121 LDRWIVDYNKMKCPVCRHRFLPKEKYT 140

[Close]

BLAST of CmoCh02G014690 vs. NCBI nr
Match: gi|659073900|ref|XP_008437313.1| (PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Cucumis melo])

HSP 1 Score: 319.3 bits (817), Expect = 4.2e-84
Identity = 152/179 (84.92%), Postives = 163/179 (91.06%), Query Frame = 1


Query: 1   MGFPASYTELLLPKLFIHVLSLLGFLRKLISLLFCLLGLQDFLEPDIPWSNHSDSFPTGP 60
           MGFPA+YTELLLPKLFIH+LS LGFLRKLIS LF L GLQDFLEPDIPW N SDSFPT P
Sbjct: 1   MGFPATYTELLLPKLFIHLLSFLGFLRKLISFLFRLFGLQDFLEPDIPWPNPSDSFPTSP 60

Query: 61  LTDLDPLSAAVLREILPVVRFSELLDPPESCAVCLYEFETDDEIRRLANCRHIFHRGCLD 120
            T LDPLSAA+LREILPVV+FS+LLDPP+ CAVCLYEFE+DDEIRRLANCRHIFHRGCLD
Sbjct: 61  FTHLDPLSAALLREILPVVKFSDLLDPPDCCAVCLYEFESDDEIRRLANCRHIFHRGCLD 120

Query: 121 RWIGYGQRTCPLCRTVFIPPDLRT-GGCNFDDRAWEDSELFEALHTDSSSSSTLLSAGL 179
           RWIGYGQRTCPLCRTVFIPPDLR+ GGCNFDDR WEDSE+FE LHTDSSSSS+  S+ L
Sbjct: 121 RWIGYGQRTCPLCRTVFIPPDLRSGGGCNFDDRLWEDSEIFEPLHTDSSSSSSSSSSNL 179

[Close]

BLAST of CmoCh02G014690 vs. NCBI nr
Match: gi|778699545|ref|XP_004143977.2| (PREDICTED: E3 ubiquitin-protein ligase RHA1B [Cucumis sativus])

HSP 1 Score: 315.5 bits (807), Expect = 6.1e-83
Identity = 149/179 (83.24%), Postives = 162/179 (90.50%), Query Frame = 1


Query: 1   MGFPASYTELLLPKLFIHVLSLLGFLRKLISLLFCLLGLQDFLEPDIPWSNHSDSFPTGP 60
           MGFPA+YTELLLPKLFIH+LS LGFLRKLIS +F L GLQDFLEPDIPW N  DSFPT P
Sbjct: 1   MGFPATYTELLLPKLFIHLLSFLGFLRKLISFIFRLFGLQDFLEPDIPWPNPPDSFPTSP 60

Query: 61  LTDLDPLSAAVLREILPVVRFSELLDPPESCAVCLYEFETDDEIRRLANCRHIFHRGCLD 120
            T LDPLSAA+LREILPVV+FS+LLDPP+ CAVCLYEFE+DDEIRRLANCRHIFHRGCLD
Sbjct: 61  FTHLDPLSAALLREILPVVKFSDLLDPPDCCAVCLYEFESDDEIRRLANCRHIFHRGCLD 120

Query: 121 RWIGYGQRTCPLCRTVFIPPDLRT-GGCNFDDRAWEDSELFEALHTDSSSSSTLLSAGL 179
           RWIGYGQRTCPLCRTVFIPPDLR+ GGCNFDDR WEDSE+FE LH+DSSSS+ L + GL
Sbjct: 121 RWIGYGQRTCPLCRTVFIPPDLRSGGGCNFDDRLWEDSEIFEPLHSDSSSSNLLSTDGL 179

[Close]

BLAST of CmoCh02G014690 vs. NCBI nr
Match: gi|470125667|ref|XP_004298823.1| (PREDICTED: E3 ubiquitin-protein ligase RHA1B [Fragaria vesca subsp. vesca])

HSP 1 Score: 216.5 bits (550), Expect = 3.8e-53
Identity = 101/159 (63.52%), Postives = 125/159 (78.62%), Query Frame = 1


Query: 1   MGFPASYTELLLPKLFIHVLSLLGFLRKLISLLFCLLGLQDFLEPDIPWSN--HSDSFPT 60
           MGFPA YTELLLPKLF+  LSLLGF+RKLI+ LF +LGLQDF+EPD  WS+  H    P 
Sbjct: 1   MGFPAGYTELLLPKLFLSTLSLLGFIRKLITTLFSVLGLQDFIEPDNAWSDPPHQTRIP- 60

Query: 61  GPLTDLDPLSAAVLREILPVVRFSELLDPPESCAVCLYEFETDDEIRRLANCRHIFHRGC 120
               +   +SA ++RE+LPVV+FS+L+DPPESCAVCLYEFE DD++RRL NCRHIFH+GC
Sbjct: 61  ----EFQSVSALLIRELLPVVKFSDLVDPPESCAVCLYEFEADDDVRRLTNCRHIFHKGC 120

Query: 121 LDRWIGYGQRTCPLCRTVFIPPDLRTGGCNFDDRAWEDS 158
           +DRW+GY Q+TCPLCRT FIP D++     F++R WE S
Sbjct: 121 VDRWVGYDQKTCPLCRTPFIPEDMQGA---FNERLWEAS 151

[Close]

BLAST of CmoCh02G014690 vs. NCBI nr
Match: gi|595849344|ref|XP_007209705.1| (hypothetical protein PRUPE_ppa012459mg [Prunus persica])

HSP 1 Score: 215.3 bits (547), Expect = 8.6e-53
Identity = 100/157 (63.69%), Postives = 122/157 (77.71%), Query Frame = 1


Query: 1   MGFPASYTELLLPKLFIHVLSLLGFLRKLISLLFCLLGLQDFLEPDIPWSNHSDSFPTGP 60
           MGFP  YTELLLPKLFIH LSLLG +RKLIS  F LLGLQDF++PD  W++     P  P
Sbjct: 1   MGFPVGYTELLLPKLFIHTLSLLGLIRKLISTFFSLLGLQDFIQPDNAWAD-----PPAP 60

Query: 61  LTDLDPLSAAVLREILPVVRFSELLDPPESCAVCLYEFETDDEIRRLANCRHIFHRGCLD 120
             +    SA ++REILPVV+FS+L+DPPESCAVCLYEFE++DEIRRL NCRHIFH+GC+D
Sbjct: 61  FPEFHSASAVLIREILPVVKFSDLVDPPESCAVCLYEFESEDEIRRLTNCRHIFHKGCVD 120

Query: 121 RWIGYGQRTCPLCRTVFIPPDLRTGGCNFDDRAWEDS 158
           RW+GY Q+TCPLCRT FI  D++    +F++R W  S
Sbjct: 121 RWVGYDQKTCPLCRTPFISDDMQG---DFNERLWAAS 149

[Close]

BLAST of CmoCh02G014690 vs. NCBI nr
Match: gi|1009156160|ref|XP_015896099.1| (PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Ziziphus jujuba])

HSP 1 Score: 213.4 bits (542), Expect = 3.3e-52
Identity = 103/157 (65.61%), Postives = 121/157 (77.07%), Query Frame = 1


Query: 1   MGFPASYTELLLPKLFIHVLSLLGFLRKLISLLFCLLGLQDFLEPDIPWSNHSDSFPTGP 60
           MGFP  YTEL LPKLF H LS LGF+RK IS LF  LGLQDF+EPD    N S + P   
Sbjct: 1   MGFPVGYTELFLPKLFFHTLSFLGFIRKFISFLFRCLGLQDFIEPD----NGSWADPGTR 60

Query: 61  LTDLDPLSAAVLREILPVVRFSELLDPPESCAVCLYEFETDDEIRRLANCRHIFHRGCLD 120
           + +   +SA ++REILPVV+FSEL+DPPESCAVCLYEFE++DEIRRL NCRHIFHRGCLD
Sbjct: 61  IPEFHSMSALLIREILPVVKFSELVDPPESCAVCLYEFESEDEIRRLTNCRHIFHRGCLD 120

Query: 121 RWIGYGQRTCPLCRTVFIPPDLRTGGCNFDDRAWEDS 158
           RW+GY QRTCPLCRT FIP D++    +F++R W  S
Sbjct: 121 RWMGYDQRTCPLCRTPFIPEDMQG---SFNERLWAAS 150

The following BLAST results are available for this feature:

BLAST of CmoCh02G014690 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RHA1B_ARATH	2.9e-24	39.73	E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1	[more]
RHA1A_ARATH	3.2e-23	38.78	Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana GN=RHA1A PE=2...	[more]
YOF7_SCHPO	1.6e-11	57.45	Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces pombe (strai...	[more]
ATL5_ARATH	1.6e-11	37.40	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1	[more]
ATL58_ARATH	4.8e-11	36.90	RING-H2 finger protein ATL58 OS=Arabidopsis thaliana GN=ATL58 PE=2 SV=1	[more]

BLAST of CmoCh02G014690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQV2_CUCSA	4.2e-83	83.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152910 PE=4 SV=1	[more]
M5WAZ7_PRUPE	6.0e-53	63.69	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012459mg PE=4 SV=1	[more]
A0A0D2MY16_GOSRA	1.9e-51	60.87	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G139600 PE=4 SV=1	[more]
V4SXV8_9ROSI	1.6e-50	60.84	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024600mg PE=4 SV=1	[more]
A0A067GLK3_CITSI	1.6e-50	60.84	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030807mg PE=4 SV=1	[more]

BLAST of CmoCh02G014690 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G63840.1	5.7e-47	57.80	RING/U-box superfamily protein	[more]
AT3G61460.1	5.3e-45	53.42	brassinosteroid-responsive RING-H2	[more]
AT5G41400.1	4.2e-42	52.87	RING/U-box superfamily protein	[more]
AT4G11360.1	1.6e-25	39.73	RING-H2 finger A1B	[more]
AT4G11370.1	1.8e-24	38.78	RING-H2 finger A1A	[more]

BLAST of CmoCh02G014690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659073900\|ref\|XP_008437313.1\|	4.2e-84	84.92	PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Cucumis melo]	[more]
gi\|778699545\|ref\|XP_004143977.2\|	6.1e-83	83.24	PREDICTED: E3 ubiquitin-protein ligase RHA1B [Cucumis sativus]	[more]
gi\|470125667\|ref\|XP_004298823.1\|	3.8e-53	63.52	PREDICTED: E3 ubiquitin-protein ligase RHA1B [Fragaria vesca subsp. vesca]	[more]
gi\|595849344\|ref\|XP_007209705.1\|	8.6e-53	63.69	hypothetical protein PRUPE_ppa012459mg [Prunus persica]	[more]
gi\|1009156160\|ref\|XP_015896099.1\|	3.3e-52	65.61	PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G014690.1	CmoCh02G014690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 90..134 score: 5.0
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 91..133 score: 3.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 91..134 score: 1
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 88..136 score: 3.1
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 82..159 score: 8.9
None	No IPR available	PANTHER	PTHR14155:SF175	E3 UBIQUITIN-PROTEIN LIGASE RHA2B-RELATED	coord: 82..159 score: 8.9
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 72..140 score: 7.07

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G014690	Cucsa.135690	Cucumber (Gy14) v1	cgycmoB0369
CmoCh02G014690	Cucsa.303350	Cucumber (Gy14) v1	cgycmoB0832
CmoCh02G014690	CmaCh02G014340	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G014690	Cla011427	Watermelon (97103) v1	cmowmB563
CmoCh02G014690	Cla021223	Watermelon (97103) v1	cmowmB561
CmoCh02G014690	Csa5G152910	Cucumber (Chinese Long) v2	cmocuB598
CmoCh02G014690	MELO3C005696	Melon (DHL92) v3.5.1	cmomeB519
CmoCh02G014690	MELO3C021190	Melon (DHL92) v3.5.1	cmomeB549
CmoCh02G014690	ClCG01G002500	Watermelon (Charleston Gray)	cmowcgB516
CmoCh02G014690	ClCG06G003510	Watermelon (Charleston Gray)	cmowcgB561
CmoCh02G014690	CSPI05G05200	Wild cucumber (PI 183967)	cmocpiB606
CmoCh02G014690	CSPI06G00710	Wild cucumber (PI 183967)	cmocpiB641
CmoCh02G014690	Lsi09G015870	Bottle gourd (USVL1VR-Ls)	cmolsiB524
CmoCh02G014690	Lsi09G002350	Bottle gourd (USVL1VR-Ls)	cmolsiB516
CmoCh02G014690	Cp4.1LG13g01360	Cucurbita pepo (Zucchini)	cmocpeB550
CmoCh02G014690	MELO3C005696.2	Melon (DHL92) v3.6.1	cmomedB596
CmoCh02G014690	CsaV3_3G008780	Cucumber (Chinese Long) v3	cmocucB0701
CmoCh02G014690	CsaV3_5G002600	Cucumber (Chinese Long) v3	cmocucB0718
CmoCh02G014690	Cla97C01G002560	Watermelon (97103) v2	cmowmbB575
CmoCh02G014690	Cla97C05G081740	Watermelon (97103) v2	cmowmbB623
CmoCh02G014690	Bhi12G000272	Wax gourd	cmowgoB0712
CmoCh02G014690	CsGy5G002480	Cucumber (Gy14) v2	cgybcmoB613
CmoCh02G014690	Carg16622	Silver-seed gourd	carcmoB1254
CmoCh02G014690	Carg02545	Silver-seed gourd	carcmoB1237

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh02G014690	CmoCh15G013080	Cucurbita moschata (Rifu)	cmocmoB250

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G014690	Cucurbita maxima (Rimu)	cmacmoB298
CmoCh02G014690	Cucurbita pepo (Zucchini)	cmocpeB596