CmoCh02G013020 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G013020
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr02 : 7733269 .. 7734601 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTGAGCCATTTTCATGTGATATAAACCCTTTTCTTCTCACCCATATTCACACTCAACAACGCATAAGAGAAAGAAGAAAAACCCTATTTGCTGCTTGGGAGAGGGAAGGTGAAAGAAAGGTGAGTTTGAATTATAAGCTCAATTTTAATTTATTTTCTTAATTTTACTCGATCCCGATTCGAGTTAACTGGACTCGAACATTTGGTCTCTTGATTAAGAATATATGTCTTAACTAGTCGAAGGGAAACGGGACATGAGTTATGAATTTTACTTGAATTAAGCTTATATTTTGTGTTTATATGATATTTTTTTAGTTTATTTAATATTTTATTAGTGATGTTTTTACATAAATATGGTGTAATTAATTAAATAAAATAAAATAATTAATTAAAACACGGTTTTAAGTTTATGAATTTAATTTTATTTGTTAATGTAGTCTGAAACATGACACGTGCGAGGCATGCCTCGTGTTCCGTCTTTTTTCAGTCCATTTCAGAATCGTGTTGGGCTGTTTCTGTTTAATATCATCGAAAACGTTAATGGGCCGAGCCCAAATAAACTGCAATTTTTTTATATTTTTATTTTTATATAATTCCACTAATTTTAATATACAATTTTTAAAACTTTGTTTGAGCAATAATTGTTAGCGCATGTTAGCGCATTTTGGCGCATTTTAGAATGGTAATTTTGGGTGATTGAAGGATGGAGGTTATTTTTCTGTTGAGCTTGCATGAATGTTTAGATGATGTAATGATTGTGATACTCGAGCTATAGATTTTTCCCTAAACCAATGTTTTTCTTTTTTTCCTCAACTCCACTCGAAGCAAATTACTTTAGCGAATAAATGGATCCAAGCAGCTCGAAAATTGACCCATCAGGTGTGTCTTATTTATTAATTTTGACCTCTAAAAATATTACCTTTTCGAGTTCTTACATTTTTTTGTTTAATACAATATTAGAGTATACGATGTTTATTTGTGCATGTAGAATTCAAGCCTGCAGGTTCAGAACTCGAGGTCTTGCAGAAAGAGGTTGAGGCAAAAACGAAGAAAATTAAAGAGATGAAGAAGGAGATTGAAGGAATAAAAATGTGGTTGGAGGAGAAGAAAGCTTCTAGGGAAGAGATGGAAAGTTTAAAGAGATTATGTGAAGAATACAACAGCTTGAGAAAGGAATACTATGAAACATTGGGCAAACAGACAAGGGAATCCTAGGAAATGTGTAATTAATGACCATATACTATAATTATTAATGTCTATTTGCATGCTGTTTAATTATTATTAAAATCCAATTATTTATTTATTTATTTATTATTTAAAATTTGACCAACC

mRNA sequence

CTCTGAGCCATTTTCATGTGATATAAACCCTTTTCTTCTCACCCATATTCACACTCAACAACGCATAAGAGAAAGAAGAAAAACCCTATTTGCTGCTTGGGAGAGGGAAGGTGAAAGAAAGCAAATTACTTTAGCGAATAAATGGATCCAAGCAGCTCGAAAATTGACCCATCAGAATTCAAGCCTGCAGGTTCAGAACTCGAGGTCTTGCAGAAAGAGGTTGAGGCAAAAACGAAGAAAATTAAAGAGATGAAGAAGGAGATTGAAGGAATAAAAATGTGGTTGGAGGAGAAGAAAGCTTCTAGGGAAGAGATGGAAAGTTTAAAGAGATTATGTGAAGAATACAACAGCTTGAGAAAGGAATACTATGAAACATTGGGCAAACAGACAAGGGAATCCTAGGAAATGTGTAATTAATGACCATATACTATAATTATTAATGTCTATTTGCATGCTGTTTAATTATTATTAAAATCCAATTATTTATTTATTTATTTATTATTTAAAATTTGACCAACC

Coding sequence (CDS)

ATGGATCCAAGCAGCTCGAAAATTGACCCATCAGAATTCAAGCCTGCAGGTTCAGAACTCGAGGTCTTGCAGAAAGAGGTTGAGGCAAAAACGAAGAAAATTAAAGAGATGAAGAAGGAGATTGAAGGAATAAAAATGTGGTTGGAGGAGAAGAAAGCTTCTAGGGAAGAGATGGAAAGTTTAAAGAGATTATGTGAAGAATACAACAGCTTGAGAAAGGAATACTATGAAACATTGGGCAAACAGACAAGGGAATCCTAG
Homology
[Close]
BLAST of CmoCh02G013020 vs. TrEMBL
Match: A0A0A0KIA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G434370 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.6e-14
Identity = 53/90 (58.89%), Postives = 67/90 (74.44%), Query Frame = 1 

Query: 1  MDPSSSKIDPSEFKPAGSELEVLQKEVEAKTKKIKEMKKEIEGIKMWLEEK----KASRE 60
          MDPS+SKIDPSEF+   SEL+ L++E+E K KK++EMKK+IEG K+ LE+K    K SR+
Sbjct: 1  MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK 60

Query: 61 EMESLKRLCEEYNSLRKEYYETLGKQTRES 87
          EME  K LC +Y SLRKEY E   K+ RES
Sbjct: 61 EMEVFKGLCGKYKSLRKEYNEAWEKERRES 90

[Close]
BLAST of CmoCh02G013020 vs. NCBI nr
Match: gi|700192913|gb|KGN48117.1| (hypothetical protein Csa_6G434370 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 3.8e-14
Identity = 53/90 (58.89%), Postives = 67/90 (74.44%), Query Frame = 1 

Query: 1  MDPSSSKIDPSEFKPAGSELEVLQKEVEAKTKKIKEMKKEIEGIKMWLEEK----KASRE 60
          MDPS+SKIDPSEF+   SEL+ L++E+E K KK++EMKK+IEG K+ LE+K    K SR+
Sbjct: 1  MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK 60

Query: 61 EMESLKRLCEEYNSLRKEYYETLGKQTRES 87
          EME  K LC +Y SLRKEY E   K+ RES
Sbjct: 61 EMEVFKGLCGKYKSLRKEYNEAWEKERRES 90

The following BLAST results are available for this feature:
BLAST of CmoCh02G013020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh02G013020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIA6_CUCSA2.6e-1458.89Uncharacterized protein OS=Cucumis sativus GN=Csa_6G434370 PE=4 SV=1[more]
BLAST of CmoCh02G013020 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh02G013020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192913|gb|KGN48117.1|3.8e-1458.89hypothetical protein Csa_6G434370 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G013020.1CmoCh02G013020.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 44..78
score: -coord: 20..40
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G013020CmaCh02G012600Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G013020Cp4.1LG05g04870Cucurbita pepo (Zucchini)cmocpeB595
CmoCh02G013020MELO3C014577.2Melon (DHL92) v3.6.1cmomedB642
CmoCh02G013020CsaV3_6G039180Cucumber (Chinese Long) v3cmocucB0740
CmoCh02G013020CsGy6G023380Cucumber (Gy14) v2cgybcmoB798
CmoCh02G013020Carg02698Silver-seed gourdcarcmoB1237
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G013020Cucurbita pepo (Zucchini)cmocpeB576
CmoCh02G013020Cucurbita pepo (Zucchini)cmocpeB581
CmoCh02G013020Cucurbita pepo (Zucchini)cmocpeB593
CmoCh02G013020Bottle gourd (USVL1VR-Ls)cmolsiB525
CmoCh02G013020Bottle gourd (USVL1VR-Ls)cmolsiB571
CmoCh02G013020Cucumber (Gy14) v2cgybcmoB110
CmoCh02G013020Silver-seed gourdcarcmoB0635
CmoCh02G013020Silver-seed gourdcarcmoB0710
CmoCh02G013020Cucumber (Chinese Long) v3cmocucB0676
CmoCh02G013020Watermelon (97103) v2cmowmbB602
CmoCh02G013020Watermelon (97103) v2cmowmbB618
CmoCh02G013020Wax gourdcmowgoB0747
CmoCh02G013020Cucurbita moschata (Rifu)cmocmoB072
CmoCh02G013020Cucurbita moschata (Rifu)cmocmoB118
CmoCh02G013020Cucurbita moschata (Rifu)cmocmoB405
CmoCh02G013020Cucumber (Gy14) v1cgycmoB0323
CmoCh02G013020Cucurbita maxima (Rimu)cmacmoB094
CmoCh02G013020Cucurbita maxima (Rimu)cmacmoB152
CmoCh02G013020Cucurbita maxima (Rimu)cmacmoB555
CmoCh02G013020Wild cucumber (PI 183967)cmocpiB571
CmoCh02G013020Wild cucumber (PI 183967)cmocpiB627
CmoCh02G013020Cucumber (Chinese Long) v2cmocuB566
CmoCh02G013020Cucumber (Chinese Long) v2cmocuB620
CmoCh02G013020Melon (DHL92) v3.5.1cmomeB561
CmoCh02G013020Watermelon (Charleston Gray)cmowcgB538
CmoCh02G013020Watermelon (Charleston Gray)cmowcgB552
CmoCh02G013020Watermelon (97103) v1cmowmB585