CmaCh02G012600 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh02G012600
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr02 : 7400156 .. 7400553 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCGAAGCAGCAGCTCGAAAATTGACCCATCGGGTTTGTCTTATTTATTAATTTTGACCTTTAAAAATATTACTTTTTCAAGTTGTATTTTTTGTTTGATACAATATTATAGTATACGATGCTTATTTGTGCGTGTAGAATTCAAGCCTGTGGGTTTAGAACTCGAGGTCTTGCAGAAAGAGGTCGAGGAAAAAACGAAGAAAATTAAAGAGATGAAGAAGGAGATTGAAGCAATAAAAATGTGGTTGGAGGAGAAGAAAGGTTCAAGGGAAGAAATAGAAAGTTTAAAGACATTATGTGAAGAATACAACAGCTTGAGAAAGGAATACTATGAAACATTGGGCAATCAGACAAGGGAATCCTAGGAATTGACTATAATTATTAGTGTCTATTT

mRNA sequence

ATGGATCGAAGCAGCAGCTCGAAAATTGACCCATCGGAATTCAAGCCTGTGGGTTTAGAACTCGAGGTCTTGCAGAAAGAGGTCGAGGAAAAAACGAAGAAAATTAAAGAGATGAAGAAGGAGATTGAAGCAATAAAAATGTGGTTGGAGGAGAAGAAAGGTTCAAGGGAAGAAATAGAAAGTTTAAAGACATTATGTGAAGAATACAACAGCTTGAGAAAGGAATACTATGAAACATTGGGCAATCAGACAAGGGAATCCTAGGAATTGACTATAATTATTAGTGTCTATTT

Coding sequence (CDS)

ATGGATCGAAGCAGCAGCTCGAAAATTGACCCATCGGAATTCAAGCCTGTGGGTTTAGAACTCGAGGTCTTGCAGAAAGAGGTCGAGGAAAAAACGAAGAAAATTAAAGAGATGAAGAAGGAGATTGAAGCAATAAAAATGTGGTTGGAGGAGAAGAAAGGTTCAAGGGAAGAAATAGAAAGTTTAAAGACATTATGTGAAGAATACAACAGCTTGAGAAAGGAATACTATGAAACATTGGGCAATCAGACAAGGGAATCCTAG

Protein sequence

MDRSSSSKIDPSEFKPVGLELEVLQKEVEEKTKKIKEMKKEIEAIKMWLEEKKGSREEIESLKTLCEEYNSLRKEYYETLGNQTRES
Homology
[Close]
BLAST of CmaCh02G012600 vs. TrEMBL
Match: A0A0A0KIA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G434370 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-11
Identity = 48/87 (55.17%), Postives = 63/87 (72.41%), Query Frame = 1 

Query: 5  SSSKIDPSEFKPVGLELEVLQKEVEEKTKKIKEMKKEIEAIKMWLEEKKG----SREEIE 64
          S+SKIDPSEF+ V  EL+ L++E+EEK KK++EMKK+IE  K+ LE+KK     SR+E+E
Sbjct: 4  SNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRKEME 63

Query: 65 SLKTLCEEYNSLRKEYYETLGNQTRES 88
            K LC +Y SLRKEY E    + RES
Sbjct: 64 VFKGLCGKYKSLRKEYNEAWEKERRES 90

[Close]
BLAST of CmaCh02G012600 vs. NCBI nr
Match: gi|700192913|gb|KGN48117.1| (hypothetical protein Csa_6G434370 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 3.0e-11
Identity = 48/87 (55.17%), Postives = 63/87 (72.41%), Query Frame = 1 

Query: 5  SSSKIDPSEFKPVGLELEVLQKEVEEKTKKIKEMKKEIEAIKMWLEEKKG----SREEIE 64
          S+SKIDPSEF+ V  EL+ L++E+EEK KK++EMKK+IE  K+ LE+KK     SR+E+E
Sbjct: 4  SNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRKEME 63

Query: 65 SLKTLCEEYNSLRKEYYETLGNQTRES 88
            K LC +Y SLRKEY E    + RES
Sbjct: 64 VFKGLCGKYKSLRKEYNEAWEKERRES 90

The following BLAST results are available for this feature:
BLAST of CmaCh02G012600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh02G012600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIA6_CUCSA2.1e-1155.17Uncharacterized protein OS=Cucumis sativus GN=Csa_6G434370 PE=4 SV=1[more]
BLAST of CmaCh02G012600 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh02G012600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192913|gb|KGN48117.1|3.0e-1155.17hypothetical protein Csa_6G434370 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G012600.1CmaCh02G012600.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 21..41
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh02G012600CmoCh02G013020Cucurbita moschata (Rifu)cmacmoB619
CmaCh02G012600Cp4.1LG05g04870Cucurbita pepo (Zucchini)cmacpeB646
CmaCh02G012600Carg02698Silver-seed gourdcarcmaB1268
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh02G012600Cucurbita maxima (Rimu)cmacmaB112
CmaCh02G012600Cucurbita maxima (Rimu)cmacmaB159
CmaCh02G012600Cucurbita maxima (Rimu)cmacmaB470
CmaCh02G012600Cucumber (Gy14) v1cgycmaB0327
CmaCh02G012600Cucurbita moschata (Rifu)cmacmoB573
CmaCh02G012600Cucurbita moschata (Rifu)cmacmoB574
CmaCh02G012600Cucurbita moschata (Rifu)cmacmoB607
CmaCh02G012600Wild cucumber (PI 183967)cmacpiB583
CmaCh02G012600Wild cucumber (PI 183967)cmacpiB635
CmaCh02G012600Cucumber (Chinese Long) v2cmacuB630
CmaCh02G012600Melon (DHL92) v3.5.1cmameB572
CmaCh02G012600Watermelon (Charleston Gray)cmawcgB541
CmaCh02G012600Watermelon (Charleston Gray)cmawcgB556
CmaCh02G012600Watermelon (97103) v1cmawmB592
CmaCh02G012600Cucurbita pepo (Zucchini)cmacpeB627
CmaCh02G012600Cucurbita pepo (Zucchini)cmacpeB632
CmaCh02G012600Cucurbita pepo (Zucchini)cmacpeB643
CmaCh02G012600Bottle gourd (USVL1VR-Ls)cmalsiB540
CmaCh02G012600Cucumber (Gy14) v2cgybcmaB120
CmaCh02G012600Cucumber (Gy14) v2cgybcmaB819
CmaCh02G012600Melon (DHL92) v3.6.1cmamedB654
CmaCh02G012600Silver-seed gourdcarcmaB0653
CmaCh02G012600Silver-seed gourdcarcmaB0733
CmaCh02G012600Cucumber (Chinese Long) v3cmacucB0691
CmaCh02G012600Cucumber (Chinese Long) v3cmacucB0752
CmaCh02G012600Watermelon (97103) v2cmawmbB629
CmaCh02G012600Wax gourdcmawgoB0757