CmoCh02G012630 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G012630
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr02 : 7551971 .. 7552330 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAAATCTCAAGGCGTTGGGTGTTCTACACGATTGGCTCCGGCGACCCTCTGCCCTTTGCAGAGGCCATCATTGGGTCGTGGCATCAACGCCGGAGTTTCTTTTCCTTTTTGGAACAATTCCCAGAACAAGCAGAAGGCCAAGAGCATCAGCAATGGCCGCCCTAGACTCGTGTCCCGTGAAATCAAAGCAGCCTTGACCACTGTCGCCGAACCCACCACCACCGTCCTCACAAAAGTCATTGTCAAGAAGATCACTGGAGAAATCACTTCGTCCACACTTTTCATGGAAAGCAAGGCCCTCGATAAGTTGCTCAAACTCGAGTTCGCCAGCATCTTCGTCATCGTTTATGCATGA

mRNA sequence

ATGTTGAAATCTCAAGGCGTTGGGTGTTCTACACGATTGGCTCCGGCGACCCTCTGCCCTTTGCAGAGGCCATCATTGGGTCGTGGCATCAACGCCGGAGTTTCTTTTCCTTTTTGGAACAATTCCCAGAACAAGCAGAAGGCCAAGAGCATCAGCAATGGCCGCCCTAGACTCGTGTCCCGTGAAATCAAAGCAGCCTTGACCACTGTCGCCGAACCCACCACCACCGTCCTCACAAAAGTCATTGTCAAGAAGATCACTGGAGAAATCACTTCGTCCACACTTTTCATGGAAAGCAAGGCCCTCGATAAGTTGCTCAAACTCGAGTTCGCCAGCATCTTCGTCATCGTTTATGCATGA

Coding sequence (CDS)

ATGTTGAAATCTCAAGGCGTTGGGTGTTCTACACGATTGGCTCCGGCGACCCTCTGCCCTTTGCAGAGGCCATCATTGGGTCGTGGCATCAACGCCGGAGTTTCTTTTCCTTTTTGGAACAATTCCCAGAACAAGCAGAAGGCCAAGAGCATCAGCAATGGCCGCCCTAGACTCGTGTCCCGTGAAATCAAAGCAGCCTTGACCACTGTCGCCGAACCCACCACCACCGTCCTCACAAAAGTCATTGTCAAGAAGATCACTGGAGAAATCACTTCGTCCACACTTTTCATGGAAAGCAAGGCCCTCGATAAGTTGCTCAAACTCGAGTTCGCCAGCATCTTCGTCATCGTTTATGCATGA
Homology
[Close]
BLAST of CmoCh02G012630 vs. TrEMBL
Match: A0A125S6K8_CUCME (Lipoxygenase OS=Cucumis melo var. makuwa GN=LOX13 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.0e-13
Identity = 64/121 (52.89%), Postives = 75/121 (61.98%), Query Frame = 1 

Query: 1   MLKSQGVGCSTRLAPATLCPLQRPSLGRGINAGVSFPFWNNSQNKQKA----KSISNGRP 60
           MLKS   G ST++A  TLC L+R S      +G  F  + N  N +K     KS +NG  
Sbjct: 1   MLKSPACGSSTQVALVTLCHLRRSSN----RSGALFQPYPNDINLKKQLRGKKSKNNGVL 60

Query: 61  RLVSRE--IKAALTTVAEPTTTVLTKVIVKKITGEITSSTLFMESKALDKLLKLEFASIF 116
           RLVS    IKAAL T AEPTTTV+TKVIVKKITGE TSS L   S+   KLL+L FASI 
Sbjct: 61  RLVSGGGIIKAALATAAEPTTTVITKVIVKKITGETTSSNLMEASQPPQKLLQLGFASIL 117

[Close]
BLAST of CmoCh02G012630 vs. TrEMBL
Match: A0A0A0L1W1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G288070 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-11
Identity = 62/119 (52.10%), Postives = 73/119 (61.34%), Query Frame = 1 

Query: 1   MLKSQGVGCSTRLAPATLCPLQRPSLGRGINAGVSFPFWNNSQNKQKA-----KSISNGR 60
           MLKS G G ST++A ATLC L R S     ++G  F  + N  N +K      KS +NG 
Sbjct: 1   MLKSLGCGSSTQVASATLCHLWRSSS----HSGALFQPYPNDINLKKQLMRGKKSKNNGG 60

Query: 61  PRLVSRE--IKAALTTVAEPTTTVLTKVIVKKITGEITSSTLFMESKALDKLLKLEFAS 113
            RLVS    IKAAL   AEPTTTV+TKVIVKKITG  +SS L   S+   KLL+L FAS
Sbjct: 61  LRLVSGGGIIKAALAISAEPTTTVITKVIVKKITGVTSSSNLTNGSQPPQKLLQLGFAS 115

[Close]
BLAST of CmoCh02G012630 vs. TrEMBL
Match: A0A0A0L0L3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G288080 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-10
Identity = 56/123 (45.53%), Postives = 73/123 (59.35%), Query Frame = 1 

Query: 1   MLKSQGVGCSTRLAPATLCPLQRPSLGRGINAGVSFPFWNNSQNKQKAKSIS------NG 60
           MLKSQG+G S  +AP +L   +     RGI+     P+ NN+  ++K + I       NG
Sbjct: 1   MLKSQGLGSSIGVAPVSLHHTRTSLARRGIDGSALVPYQNNNDLQKKLRGIKIKNNNDNG 60

Query: 61  RPRLVSRE--IKAALTTVAEPTTTVLTKVIVKKITGEITSSTLFMESK--ALDKLLKLEF 114
             R +S    IKAAL T  E TT+V+T V VKKITGEITSST+  E++  A  K L+L F
Sbjct: 61  GLRSLSGSGIIKAALATATETTTSVITTVTVKKITGEITSSTIVKENQLAAPPKFLQLGF 120

[Close]
BLAST of CmoCh02G012630 vs. NCBI nr
Match: gi|987644900|gb|AME15769.1| (lipoxygenase 13 [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 5.8e-13
Identity = 64/121 (52.89%), Postives = 75/121 (61.98%), Query Frame = 1 

Query: 1   MLKSQGVGCSTRLAPATLCPLQRPSLGRGINAGVSFPFWNNSQNKQKA----KSISNGRP 60
           MLKS   G ST++A  TLC L+R S      +G  F  + N  N +K     KS +NG  
Sbjct: 1   MLKSPACGSSTQVALVTLCHLRRSSN----RSGALFQPYPNDINLKKQLRGKKSKNNGVL 60

Query: 61  RLVSRE--IKAALTTVAEPTTTVLTKVIVKKITGEITSSTLFMESKALDKLLKLEFASIF 116
           RLVS    IKAAL T AEPTTTV+TKVIVKKITGE TSS L   S+   KLL+L FASI 
Sbjct: 61  RLVSGGGIIKAALATAAEPTTTVITKVIVKKITGETTSSNLMEASQPPQKLLQLGFASIL 117

[Close]
BLAST of CmoCh02G012630 vs. NCBI nr
Match: gi|659097667|ref|XP_008449748.1| (PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 5.8e-13
Identity = 64/121 (52.89%), Postives = 75/121 (61.98%), Query Frame = 1 

Query: 1   MLKSQGVGCSTRLAPATLCPLQRPSLGRGINAGVSFPFWNNSQNKQKA----KSISNGRP 60
           MLKS   G ST++A  TLC L+R S      +G  F  + N  N +K     KS +NG  
Sbjct: 1   MLKSPACGSSTQVALVTLCHLRRSSN----RSGALFQPYPNDINLKKQLRGKKSKNNGVL 60

Query: 61  RLVSRE--IKAALTTVAEPTTTVLTKVIVKKITGEITSSTLFMESKALDKLLKLEFASIF 116
           RLVS    IKAAL T AEPTTTV+TKVIVKKITGE TSS L   S+   KLL+L FASI 
Sbjct: 61  RLVSGGGIIKAALATAAEPTTTVITKVIVKKITGETTSSNLMEASQPPQKLLQLGFASIL 117

[Close]
BLAST of CmoCh02G012630 vs. NCBI nr
Match: gi|659097669|ref|XP_008449749.1| (PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 3.8e-12
Identity = 59/124 (47.58%), Postives = 79/124 (63.71%), Query Frame = 1 

Query: 1   MLKSQGVGCSTRLAPATLCPLQRP-SLGRGINAGVSFPFWNNSQNKQKAKSI------SN 60
           MLKSQG+G S  +AP TL  +Q   +  R I+     P+ NN+  ++K + I      +N
Sbjct: 1   MLKSQGLGSSIGVAPVTLRHMQTSLARRRNIDGSALVPYQNNNDLQKKLRGIKIKNNDNN 60

Query: 61  GRPRLVSRE---IKAALTTVAEPTTTVLTKVIVKKITGEITSSTLFMESK-ALDKLLKLE 114
           G  RL+S     IKAAL T  E TT+V+TKV+VKKITGEITSST+  E++ A  K+L+L 
Sbjct: 61  GGLRLMSGPSGTIKAALATATELTTSVITKVVVKKITGEITSSTIIKENQLATQKVLQLG 120

[Close]
BLAST of CmoCh02G012630 vs. NCBI nr
Match: gi|700198978|gb|KGN54136.1| (hypothetical protein Csa_4G288070 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-11
Identity = 62/119 (52.10%), Postives = 73/119 (61.34%), Query Frame = 1 

Query: 1   MLKSQGVGCSTRLAPATLCPLQRPSLGRGINAGVSFPFWNNSQNKQKA-----KSISNGR 60
           MLKS G G ST++A ATLC L R S     ++G  F  + N  N +K      KS +NG 
Sbjct: 1   MLKSLGCGSSTQVASATLCHLWRSSS----HSGALFQPYPNDINLKKQLMRGKKSKNNGG 60

Query: 61  PRLVSRE--IKAALTTVAEPTTTVLTKVIVKKITGEITSSTLFMESKALDKLLKLEFAS 113
            RLVS    IKAAL   AEPTTTV+TKVIVKKITG  +SS L   S+   KLL+L FAS
Sbjct: 61  LRLVSGGGIIKAALAISAEPTTTVITKVIVKKITGVTSSSNLTNGSQPPQKLLQLGFAS 115

[Close]
BLAST of CmoCh02G012630 vs. NCBI nr
Match: gi|449448966|ref|XP_004142236.1| (PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-11
Identity = 62/119 (52.10%), Postives = 73/119 (61.34%), Query Frame = 1 

Query: 1   MLKSQGVGCSTRLAPATLCPLQRPSLGRGINAGVSFPFWNNSQNKQKA-----KSISNGR 60
           MLKS G G ST++A ATLC L R S     ++G  F  + N  N +K      KS +NG 
Sbjct: 1   MLKSLGCGSSTQVASATLCHLWRSSS----HSGALFQPYPNDINLKKQLMRGKKSKNNGG 60

Query: 61  PRLVSRE--IKAALTTVAEPTTTVLTKVIVKKITGEITSSTLFMESKALDKLLKLEFAS 113
            RLVS    IKAAL   AEPTTTV+TKVIVKKITG  +SS L   S+   KLL+L FAS
Sbjct: 61  LRLVSGGGIIKAALAISAEPTTTVITKVIVKKITGVTSSSNLTNGSQPPQKLLQLGFAS 115

The following BLAST results are available for this feature:
BLAST of CmoCh02G012630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh02G012630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A125S6K8_CUCME4.0e-1352.89Lipoxygenase OS=Cucumis melo var. makuwa GN=LOX13 PE=2 SV=1[more]
A0A0A0L1W1_CUCSA1.7e-1152.10Uncharacterized protein OS=Cucumis sativus GN=Csa_4G288070 PE=4 SV=1[more]
A0A0A0L0L3_CUCSA1.1e-1045.53Uncharacterized protein OS=Cucumis sativus GN=Csa_4G288080 PE=4 SV=1[more]
BLAST of CmoCh02G012630 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh02G012630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|987644900|gb|AME15769.1|5.8e-1352.89lipoxygenase 13 [Cucumis melo var. makuwa][more]
gi|659097667|ref|XP_008449748.1|5.8e-1352.89PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis melo][more]
gi|659097669|ref|XP_008449749.1|3.8e-1247.58PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis melo][more]
gi|700198978|gb|KGN54136.1|2.4e-1152.10hypothetical protein Csa_4G288070 [Cucumis sativus][more]
gi|449448966|ref|XP_004142236.1|2.4e-1152.10PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G012630.1CmoCh02G012630.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G012630Lsi10G010250Bottle gourd (USVL1VR-Ls)cmolsiB525
CmoCh02G012630Bhi10G000292Wax gourdcmowgoB0747
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G012630Melon (DHL92) v3.6.1cmomedB632
CmoCh02G012630Melon (DHL92) v3.6.1cmomedB642
CmoCh02G012630Silver-seed gourdcarcmoB0242
CmoCh02G012630Silver-seed gourdcarcmoB0710
CmoCh02G012630Silver-seed gourdcarcmoB1237
CmoCh02G012630Cucumber (Chinese Long) v3cmocucB0676
CmoCh02G012630Cucumber (Chinese Long) v3cmocucB0713
CmoCh02G012630Cucumber (Chinese Long) v3cmocucB0755
CmoCh02G012630Watermelon (97103) v2cmowmbB602
CmoCh02G012630Wax gourdcmowgoB0763
CmoCh02G012630Cucurbita moschata (Rifu)cmocmoB072
CmoCh02G012630Cucurbita moschata (Rifu)cmocmoB118
CmoCh02G012630Cucurbita moschata (Rifu)cmocmoB405
CmoCh02G012630Cucurbita moschata (Rifu)cmocmoB447
CmoCh02G012630Cucumber (Gy14) v1cgycmoB0098
CmoCh02G012630Cucumber (Gy14) v1cgycmoB0399
CmoCh02G012630Cucurbita maxima (Rimu)cmacmoB094
CmoCh02G012630Cucurbita maxima (Rimu)cmacmoB555
CmoCh02G012630Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G012630Wild cucumber (PI 183967)cmocpiB571
CmoCh02G012630Wild cucumber (PI 183967)cmocpiB603
CmoCh02G012630Wild cucumber (PI 183967)cmocpiB645
CmoCh02G012630Cucumber (Chinese Long) v2cmocuB566
CmoCh02G012630Cucumber (Chinese Long) v2cmocuB596
CmoCh02G012630Cucumber (Chinese Long) v2cmocuB635
CmoCh02G012630Melon (DHL92) v3.5.1cmomeB555
CmoCh02G012630Melon (DHL92) v3.5.1cmomeB561
CmoCh02G012630Watermelon (Charleston Gray)cmowcgB538
CmoCh02G012630Watermelon (Charleston Gray)cmowcgB552
CmoCh02G012630Watermelon (97103) v1cmowmB585
CmoCh02G012630Cucurbita pepo (Zucchini)cmocpeB576
CmoCh02G012630Cucurbita pepo (Zucchini)cmocpeB593
CmoCh02G012630Cucurbita pepo (Zucchini)cmocpeB595
CmoCh02G012630Cucumber (Gy14) v2cgybcmoB110
CmoCh02G012630Cucumber (Gy14) v2cgybcmoB496
CmoCh02G012630Cucumber (Gy14) v2cgybcmoB945