Bhi10G000292 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi10G000292
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Lipoxygenase
Location	chr10 : 8074500 .. 8075003 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAAATCTCAAGGCCTTGGGTCTTCAACAAGAGTGGCTCCGGCAACTCTCTGCCATATGCGGAGGTCGTTGGGATGTTGCAGCATCGACGGCGGTGCTTTGGTTCCTTACCAGAATAATAATAATCTCCAAAAGCAGCTGCGGGGGATTAAGATCAAGAATAATAATGGAGGTTTGAGACTAACGTCTAGGGGTGGAATAGCCAAAGCAGCCTTAGCCACGGCCACGGAACCCACCACTAGTGTCACTACAAAAGTTACTGTGAAGAAGATCACAGGAGAAATCACTTCATCCAAAATTTTAAAAGAAAACCAAGCCCCTCAAAAGTTGCTCCAGCTTGGGTTTGCCAGCATCCTCCTCGACCCTAGTAAGTTTCTCTTCCTTACACATTTAATTAATTATCTAAACAAAAACTATACTCTTTTATTTTATAATAATGTGAAACCTTTTTTAACCTTCATACGTACAAACACATCACTTGTTTTGTTTCCAAACCAGTAG

mRNA sequence

ATGTTGAAATCTCAAGGCCTTGGGTCTTCAACAAGAGTGGCTCCGGCAACTCTCTGCCATATGCGGAGGTCGTTGGGATGTTGCAGCATCGACGGCGGTGCTTTGGTTCCTTACCAGAATAATAATAATCTCCAAAAGCAGCTGCGGGGGATTAAGATCAAGAATAATAATGGAGGTTTGAGACTAACGTCTAGGGGTGGAATAGCCAAAGCAGCCTTAGCCACGGCCACGGAACCCACCACTAGTGTCACTACAAAAGTTACTGTGAAGAAGATCACAGGAGAAATCACTTCATCCAAAATTTTAAAAGAAAACCAAGCCCCTCAAAAGTTGCTCCAGCTTGGGTTTGCCAGCATCCTCCTCGACCCTAGTAAGTTTCTCTTCCTTACACATTTAATTAATTATCTAAACAAAAACTATACTCTTTTATTTTATAATAATGTGAAACCTTTTTTAACCTTCATACGTACAAACACATCACTTGTTTTGTTTCCAAACCAGTAG

Coding sequence (CDS)

ATGTTGAAATCTCAAGGCCTTGGGTCTTCAACAAGAGTGGCTCCGGCAACTCTCTGCCATATGCGGAGGTCGTTGGGATGTTGCAGCATCGACGGCGGTGCTTTGGTTCCTTACCAGAATAATAATAATCTCCAAAAGCAGCTGCGGGGGATTAAGATCAAGAATAATAATGGAGGTTTGAGACTAACGTCTAGGGGTGGAATAGCCAAAGCAGCCTTAGCCACGGCCACGGAACCCACCACTAGTGTCACTACAAAAGTTACTGTGAAGAAGATCACAGGAGAAATCACTTCATCCAAAATTTTAAAAGAAAACCAAGCCCCTCAAAAGTTGCTCCAGCTTGGGTTTGCCAGCATCCTCCTCGACCCTAGTAAGTTTCTCTTCCTTACACATTTAATTAATTATCTAAACAAAAACTATACTCTTTTATTTTATAATAATGTGAAACCTTTTTTAACCTTCATACGTACAAACACATCACTTGTTTTGTTTCCAAACCAGTAG

Protein sequence

MLKSQGLGSSTRVAPATLCHMRRSLGCCSIDGGALVPYQNNNNLQKQLRGIKIKNNNGGLRLTSRGGIAKAALATATEPTTSVTTKVTVKKITGEITSSKILKENQAPQKLLQLGFASILLDPSKFLFLTHLINYLNKNYTLLFYNNVKPFLTFIRTNTSLVLFPNQ

Homology

[Close]

BLAST of Bhi10G000292 vs. TrEMBL
Match: tr|A0A0A0L0L3|A0A0A0L0L3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G288080 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.5e-27
Identity = 87/128 (67.97%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 1   MLKSQGLGSSTRVAPATLCHMRRSLGCCSIDGGALVPYQNNNNLQKQLRGIKIKNN--NG 60
           MLKSQGLGSS  VAP +L H R SL    IDG ALVPYQNNN+LQK+LRGIKIKNN  NG
Sbjct: 1   MLKSQGLGSSIGVAPVSLHHTRTSLARRGIDGSALVPYQNNNDLQKKLRGIKIKNNNDNG 60

Query: 61  GLRLTSRGGIAKAALATATEPXXXXXXXXXXXXXXXXXXSSKILKENQ--APQKLLQLGF 120
           GLR  S  GI KAALATAT  XXXXXXX           SS I+KENQ  AP K LQLGF
Sbjct: 61  GLRSLSGSGIIKAALATATXXXXXXXXXVTVKKITGEITSSTIVKENQLAAPPKFLQLGF 120

Query: 121 ASILLDPS 125
           ASIL DPS
Sbjct: 121 ASILTDPS 128

[Close]

BLAST of Bhi10G000292 vs. TrEMBL
Match: tr|A0A1S3BMR0|A0A1S3BMR0_CUCME (Lipoxygenase OS=Cucumis melo OX=3656 GN=LOC103491540 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.1e-25
Identity = 99/129 (76.74%), Postives = 105/129 (81.40%), Query Frame = 0


Query: 1   MLKSQGLGSSTRVAPATLCHMRRSLG-CCSIDGGALVPYQNNNNLQKQLRGIKIKN--NN 60
           MLKSQGLGSS  VAP TL HM+ SL    +IDG ALVPYQNNN+LQK+LRGIKIKN  NN
Sbjct: 1   MLKSQGLGSSIGVAPVTLRHMQTSLARRRNIDGSALVPYQNNNDLQKKLRGIKIKNNDNN 60

Query: 61  GGLRLTS-RGGIAKAALATATEPXXXXXXXXXXXXXXXXXXSSKILKENQ-APQKLLQLG 120
           GGLRL S   G  KAALATAT  XXXXXXXXXXXXXXXXXXSS I+KENQ A QK+LQLG
Sbjct: 61  GGLRLMSGPSGTIKAALATATXXXXXXXXXXXXXXXXXXXXSSTIIKENQLATQKVLQLG 120

Query: 121 FASILLDPS 125
           FASIL DPS
Sbjct: 121 FASILTDPS 129

[Close]

BLAST of Bhi10G000292 vs. TrEMBL
Match: tr|A0A1S3BMS1|A0A1S3BMS1_CUCME (Lipoxygenase OS=Cucumis melo OX=3656 GN=LOC103491539 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 71/123 (57.72%), Postives = 78/123 (63.41%), Query Frame = 0


Query: 1   MLKSQGLGSSTRVAPATLCHMRRSLGCCSIDGGALVPYQNNNNLQKQLRGIKIKNNNGGL 60
           MLKS   GSST+VA  TLCH+RRS    +  G    PY N+ NL+KQLRG K K NNG L
Sbjct: 1   MLKSPACGSSTQVALVTLCHLRRS---SNRSGALFQPYPNDINLKKQLRGKKSK-NNGVL 60

Query: 61  RLTSRGGIAKAALATATEPXXXXXXXXXXXXXXXXXXSSKILKENQAPQKLLQLGFASIL 120
           RL                 XXXXXXXXXXXXXXXXXX     + +Q PQKLLQLGFASIL
Sbjct: 61  RLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEASQPPQKLLQLGFASIL 119

Query: 121 LDP 124
           LDP
Sbjct: 121 LDP 119

[Close]

BLAST of Bhi10G000292 vs. TrEMBL
Match: tr|A0A125S6K8|A0A125S6K8_CUCME (Lipoxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=LOX13 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 71/123 (57.72%), Postives = 78/123 (63.41%), Query Frame = 0


Query: 1   MLKSQGLGSSTRVAPATLCHMRRSLGCCSIDGGALVPYQNNNNLQKQLRGIKIKNNNGGL 60
           MLKS   GSST+VA  TLCH+RRS    +  G    PY N+ NL+KQLRG K K NNG L
Sbjct: 1   MLKSPACGSSTQVALVTLCHLRRS---SNRSGALFQPYPNDINLKKQLRGKKSK-NNGVL 60

Query: 61  RLTSRGGIAKAALATATEPXXXXXXXXXXXXXXXXXXSSKILKENQAPQKLLQLGFASIL 120
           RL                 XXXXXXXXXXXXXXXXXX     + +Q PQKLLQLGFASIL
Sbjct: 61  RLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEASQPPQKLLQLGFASIL 119

Query: 121 LDP 124
           LDP
Sbjct: 121 LDP 119

[Close]

BLAST of Bhi10G000292 vs. TrEMBL
Match: tr|A0A0A0L1W1|A0A0A0L1W1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G288070 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.3e-07
Identity = 60/123 (48.78%), Postives = 66/123 (53.66%), Query Frame = 0


Query: 1   MLKSQGLGSSTRVAPATLCHMRRSLGCCSIDGGALVPYQNNNNLQKQLRGIKIKNNNGGL 60
           MLKS G GSST+VA ATLCH+ RS    S  G    PY N+ NL+KQL   K   N    
Sbjct: 1   MLKSLGCGSSTQVASATLCHLWRS---SSHSGALFQPYPNDINLKKQLMRGKKSKNXXXX 60

Query: 61  RLTSRGGIAKAALATATEPXXXXXXXXXXXXXXXXXXSSKILKENQAPQKLLQLGFASIL 120
                              XXXXXXXXXXXX      SS +   +Q PQKLLQLGFAS L
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITGVTSSSNLTNGSQPPQKLLQLGFASTL 120

Query: 121 LDP 124
           LDP
Sbjct: 121 LDP 120

[Close]

BLAST of Bhi10G000292 vs. NCBI nr
Match: XP_004142137.1 (PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 87/128 (67.97%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 1   MLKSQGLGSSTRVAPATLCHMRRSLGCCSIDGGALVPYQNNNNLQKQLRGIKIKNN--NG 60
           MLKSQGLGSS  VAP +L H R SL    IDG ALVPYQNNN+LQK+LRGIKIKNN  NG
Sbjct: 1   MLKSQGLGSSIGVAPVSLHHTRTSLARRGIDGSALVPYQNNNDLQKKLRGIKIKNNNDNG 60

Query: 61  GLRLTSRGGIAKAALATATEPXXXXXXXXXXXXXXXXXXSSKILKENQ--APQKLLQLGF 120
           GLR  S  GI KAALATAT  XXXXXXX           SS I+KENQ  AP K LQLGF
Sbjct: 61  GLRSLSGSGIIKAALATATXXXXXXXXXVTVKKITGEITSSTIVKENQLAAPPKFLQLGF 120

Query: 121 ASILLDPS 125
           ASIL DPS
Sbjct: 121 ASILTDPS 128

[Close]

BLAST of Bhi10G000292 vs. NCBI nr
Match: KGN54137.1 (hypothetical protein Csa_4G288080 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 87/128 (67.97%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 1   MLKSQGLGSSTRVAPATLCHMRRSLGCCSIDGGALVPYQNNNNLQKQLRGIKIKNN--NG 60
           MLKSQGLGSS  VAP +L H R SL    IDG ALVPYQNNN+LQK+LRGIKIKNN  NG
Sbjct: 1   MLKSQGLGSSIGVAPVSLHHTRTSLARRGIDGSALVPYQNNNDLQKKLRGIKIKNNNDNG 60

Query: 61  GLRLTSRGGIAKAALATATEPXXXXXXXXXXXXXXXXXXSSKILKENQ--APQKLLQLGF 120
           GLR  S  GI KAALATAT  XXXXXXX           SS I+KENQ  AP K LQLGF
Sbjct: 61  GLRSLSGSGIIKAALATATXXXXXXXXXVTVKKITGEITSSTIVKENQLAAPPKFLQLGF 120

Query: 121 ASILLDPS 125
           ASIL DPS
Sbjct: 121 ASILTDPS 128

[Close]

BLAST of Bhi10G000292 vs. NCBI nr
Match: XP_008449749.1 (PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 6.2e-25
Identity = 99/129 (76.74%), Postives = 105/129 (81.40%), Query Frame = 0


Query: 1   MLKSQGLGSSTRVAPATLCHMRRSLG-CCSIDGGALVPYQNNNNLQKQLRGIKIKN--NN 60
           MLKSQGLGSS  VAP TL HM+ SL    +IDG ALVPYQNNN+LQK+LRGIKIKN  NN
Sbjct: 1   MLKSQGLGSSIGVAPVTLRHMQTSLARRRNIDGSALVPYQNNNDLQKKLRGIKIKNNDNN 60

Query: 61  GGLRLTS-RGGIAKAALATATEPXXXXXXXXXXXXXXXXXXSSKILKENQ-APQKLLQLG 120
           GGLRL S   G  KAALATAT  XXXXXXXXXXXXXXXXXXSS I+KENQ A QK+LQLG
Sbjct: 61  GGLRLMSGPSGTIKAALATATXXXXXXXXXXXXXXXXXXXXSSTIIKENQLATQKVLQLG 120

Query: 121 FASILLDPS 125
           FASIL DPS
Sbjct: 121 FASILTDPS 129

[Close]

BLAST of Bhi10G000292 vs. NCBI nr
Match: XP_022995022.1 (linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 56/123 (45.53%), Postives = 71/123 (57.72%), Query Frame = 0


Query: 1   MLKSQGLGSSTRVAPATLCHMRRSLGCCSIDGGALVPYQNNNNLQKQLRGIKIKNNNGGL 60
           MLKSQG+G STRVAPATLCH++R L    I+ G   P+ NN   +++ + I    +NG L
Sbjct: 1   MLKSQGVGCSTRVAPATLCHLQRPLLGRGINAGVSFPFWNNPGNKQKAKSI----SNGRL 60

Query: 61  RLTSRGGIAKAALATATEPXXXXXXXXXXXXXXXXXXSSKILKENQAPQKLLQLGFASIL 120
           RL SR    KAAL T  EP                  SS +L E++A  KLL+L FASIL
Sbjct: 61  RLVSRE--IKAALTTVAEPTTTVLTKVIVKKITGEITSSTLLMESKALDKLLKLEFASIL 117

Query: 121 LDP 124
           +DP
Sbjct: 121 VDP 117

[Close]

BLAST of Bhi10G000292 vs. NCBI nr
Match: XP_022958148.1 (linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 84.0 bits (206), Expect = 5.4e-13
Identity = 55/123 (44.72%), Postives = 70/123 (56.91%), Query Frame = 0


Query: 1   MLKSQGLGSSTRVAPATLCHMRRSLGCCSIDGGALVPYQNNNNLQKQLRGIKIKNNNGGL 60
           MLKSQG+G STRVAPATLCH++R      I+ G   P+ NN   +++ + I    +NG L
Sbjct: 1   MLKSQGVGCSTRVAPATLCHLQRPSLGRGINAGVSFPFWNNPGNKQKAKSI----SNGRL 60

Query: 61  RLTSRGGIAKAALATATEPXXXXXXXXXXXXXXXXXXSSKILKENQAPQKLLQLGFASIL 120
           RL SR    KAAL T  EP                  SS +L E++A  KLL+L FASIL
Sbjct: 61  RLVSRE--IKAALTTVAEPTTTVLTKVIVKKITGEITSSTLLMESKALDKLLKLEFASIL 117

Query: 121 LDP 124
           +DP
Sbjct: 121 VDP 117

The following BLAST results are available for this feature:

BLAST of Bhi10G000292 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi10G000292 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi10G000292 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L0L3\|A0A0A0L0L3_CUCSA	7.5e-27	67.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G288080 PE=4 SV=1	[more]
tr\|A0A1S3BMR0\|A0A1S3BMR0_CUCME	4.1e-25	76.74	Lipoxygenase OS=Cucumis melo OX=3656 GN=LOC103491540 PE=3 SV=1	[more]
tr\|A0A1S3BMS1\|A0A1S3BMS1_CUCME	1.7e-10	57.72	Lipoxygenase OS=Cucumis melo OX=3656 GN=LOC103491539 PE=3 SV=1	[more]
tr\|A0A125S6K8\|A0A125S6K8_CUCME	1.7e-10	57.72	Lipoxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=LOX13 PE=2 SV=1	[more]
tr\|A0A0A0L1W1\|A0A0A0L1W1_CUCSA	1.3e-07	48.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G288070 PE=4 SV=1	[more]

BLAST of Bhi10G000292 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142137.1	1.1e-26	67.97	PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis sativus]	[more]
KGN54137.1	1.1e-26	67.97	hypothetical protein Csa_4G288080 [Cucumis sativus]	[more]
XP_008449749.1	6.2e-25	76.74	PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis melo]	[more]
XP_022995022.1	1.1e-13	45.53	linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucurbita maxima]	[more]
XP_022958148.1	5.4e-13	44.72	linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucurbita moschata]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0031408	oxylipin biosynthetic process
biological_process	GO:0008150	biological_process
biological_process	GO:0044710	single-organism metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0051213	dioxygenase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M000292	Bhi10M000292	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi10G000292	Cucsa.065220	Cucumber (Gy14) v1	cgywgoB066
Bhi10G000292	CmoCh02G012630	Cucurbita moschata (Rifu)	cmowgoB0747
Bhi10G000292	Lsi10G010250	Bottle gourd (USVL1VR-Ls)	lsiwgoB079
Bhi10G000292	CsGy4G013090	Cucumber (Gy14) v2	cgybwgoB373

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi10G000292	Cucumber (Gy14) v1	cgywgoB277
Bhi10G000292	Cucurbita maxima (Rimu)	cmawgoB0693
Bhi10G000292	Cucurbita maxima (Rimu)	cmawgoB0757
Bhi10G000292	Cucurbita moschata (Rifu)	cmowgoB0687
Bhi10G000292	Cucurbita pepo (Zucchini)	cpewgoB0354
Bhi10G000292	Cucurbita pepo (Zucchini)	cpewgoB0944
Bhi10G000292	Wild cucumber (PI 183967)	cpiwgoB021
Bhi10G000292	Wild cucumber (PI 183967)	cpiwgoB394
Bhi10G000292	Cucumber (Chinese Long) v3	cucwgoB024
Bhi10G000292	Cucumber (Chinese Long) v3	cucwgoB396
Bhi10G000292	Cucumber (Chinese Long) v2	cuwgoB390
Bhi10G000292	Melon (DHL92) v3.6.1	medwgoB485
Bhi10G000292	Melon (DHL92) v3.5.1	mewgoB484
Bhi10G000292	Watermelon (Charleston Gray)	wcgwgoB283
Bhi10G000292	Watermelon (97103) v2	wgowmbB353
Bhi10G000292	Watermelon (97103) v1	wgowmB378
Bhi10G000292	Silver-seed gourd	carwgoB0629
Bhi10G000292	Silver-seed gourd	carwgoB1067