CmoCh02G010850 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G010850
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Late embryogenesis abundant protein (LEA) family protein
Location	Cmo_Chr02 : 6593008 .. 6593294 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGACAGCTCTCAAAGTTTGAGCTACCAAGCTGGAGAAGCCAAAGGCCAAGCCCAGGTTCACTTCGCCCCTGTTTTCTTAAATACTTGGTGGTCATTTAATCGATGATGGCTAACATATTGCTTTATATGATCATGTAGGAGAAGGCGAGTAATTTGATGGACAAGGCAAGTGATACACTCCAATCAACCAAGGAGTCGATACAAGAGGCCGGACAACAGATAGCGGCTAAGGCTCACGGTGCTGCTGATGCTGTTAAAGACGCCACTACCTTCAACAAATGA

mRNA sequence

ATGGCAGACAGCTCTCAAAGTTTGAGCTACCAAGCTGGAGAAGCCAAAGGCCAAGCCCAGGAGAAGGCGAGTAATTTGATGGACAAGGCAAGTGATACACTCCAATCAACCAAGGAGTCGATACAAGAGGCCGGACAACAGATAGCGGCTAAGGCTCACGGTGCTGCTGATGCTGTTAAAGACGCCACTACCTTCAACAAATGA

Coding sequence (CDS)

ATGGCAGACAGCTCTCAAAGTTTGAGCTACCAAGCTGGAGAAGCCAAAGGCCAAGCCCAGGAGAAGGCGAGTAATTTGATGGACAAGGCAAGTGATACACTCCAATCAACCAAGGAGTCGATACAAGAGGCCGGACAACAGATAGCGGCTAAGGCTCACGGTGCTGCTGATGCTGTTAAAGACGCCACTACCTTCAACAAATGA

Homology

[Close]

BLAST of CmoCh02G010850 vs. TrEMBL
Match: A0A0A0KPD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.4e-17
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 1  MADSSQSLSYQAGEAKGQAQEKASNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVK 60
          MAD+SQ++SYQ GEAKGQAQEKASN+M+KASD  QS KESIQE GQQ+ AKA GAADAVK
Sbjct: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60

Query: 61 DATTFNK 68
          DAT  NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh02G010850 vs. TrEMBL
Match: A0A0A0KRE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165860 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.4e-17
Identity = 52/67 (77.61%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MADSSQSLSYQAGEAKGQAQEKASNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVK 60
          MAD+S+ +SY  GEAKGQAQEKASNLMDKA DT QS KES+QEAGQQ+ AKA GAADAVK
Sbjct: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATTFNK 68
          DAT  NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh02G010850 vs. TrEMBL
Match: A0A061EH65_THECC (Late embryogenesis abundant protein family protein OS=Theobroma cacao GN=TCM_019635 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-16
Identity = 50/67 (74.63%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 1  MADSSQSLSYQAGEAKGQAQEKASNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVK 60
          MAD+SQS+SY+AGEAKGQAQEKASNLMDKA+D  QS KES+QE GQ++  KAHGA +AVK
Sbjct: 1  MADNSQSMSYKAGEAKGQAQEKASNLMDKAADAAQSAKESMQETGQKMMEKAHGAKEAVK 60

Query: 61 DATTFNK 68
          DAT  NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh02G010850 vs. TrEMBL
Match: A0A0A0KVV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643260 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.7e-16
Identity = 49/67 (73.13%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MADSSQSLSYQAGEAKGQAQEKASNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVK 60
          MADSSQ +SYQAGEAKGQ +EKASNLMD A++  QS KE+IQEAGQQ+ AKA GAA+A+K
Sbjct: 1  MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK 60

Query: 61 DATTFNK 68
          DAT  NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh02G010850 vs. TrEMBL
Match: W9RDZ1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009672 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.9e-15
Identity = 48/67 (71.64%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MADSSQSLSYQAGEAKGQAQEKASNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVK 60
          MADSS+ +SY AGEAKGQA EKASN++DKAS+T QS KES+QEAGQQ+ AKA GA +AVK
Sbjct: 1  MADSSEKISYHAGEAKGQANEKASNILDKASNTAQSAKESVQEAGQQMKAKAQGATEAVK 60

Query: 61 DATTFNK 68
          +AT  NK
Sbjct: 61 NATGINK 67

[Close]

BLAST of CmoCh02G010850 vs. TAIR10
Match: AT5G38760.1 (AT5G38760.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 77.4 bits (189), Expect = 3.7e-15
Identity = 41/67 (61.19%), Postives = 54/67 (80.60%), Query Frame = 1


Query: 1  MADSSQSLSYQAGEAKGQAQEKASNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVK 60
          M+ +SQ++S+QAG+AKGQ QEKAS +MDKAS+  QS KES++E GQQI  KA GA ++VK
Sbjct: 1  MSSNSQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVK 60

Query: 61 DATTFNK 68
          +AT  NK
Sbjct: 61 NATGMNK 67

[Close]

BLAST of CmoCh02G010850 vs. TAIR10
Match: AT5G53820.1 (AT5G53820.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 76.3 bits (186), Expect = 8.3e-15
Identity = 40/67 (59.70%), Postives = 54/67 (80.60%), Query Frame = 1


Query: 1  MADSSQSLSYQAGEAKGQAQEKASNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVK 60
          M+++SQS+S+ AG+AKGQ QEKASNL+DKAS+  QS KESIQE GQQ+  KA GA++ +K
Sbjct: 1  MSNNSQSMSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIK 60

Query: 61 DATTFNK 68
          + T  +K
Sbjct: 61 EKTGISK 67

[Close]

BLAST of CmoCh02G010850 vs. TAIR10
Match: AT3G02480.1 (AT3G02480.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 68.2 bits (165), Expect = 2.2e-12
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 1


Query: 3  DSSQSLSYQAGEAKGQAQEKASNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVKDA 62
          D+ Q+ SYQAG+A GQ +EKA  +MDKA D   S ++S+Q+ GQQ+  KA GAAD VKD 
Sbjct: 2  DNKQNASYQAGQATGQTKEKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQGAADVVKDK 61

Query: 63 TTFNK 68
          T  NK
Sbjct: 62 TGMNK 66

[Close]

BLAST of CmoCh02G010850 vs. NCBI nr
Match: gi|659073373|ref|XP_008437025.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 53/67 (79.10%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 1  MADSSQSLSYQAGEAKGQAQEKASNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVK 60
          MAD+SQ +SY  GEAKGQAQEKASN+MDKASDT QS KES+QEAGQQ+ AKA GAADAVK
Sbjct: 1  MADNSQKMSYHVGEAKGQAQEKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATTFNK 68
          DAT  NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh02G010850 vs. NCBI nr
Match: gi|659119050|ref|XP_008459448.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 1


Query: 1  MADSSQSLSYQAGEAKGQAQEKASNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVK 60
          MADSSQ +SYQAGEAKGQA+EKASNLMDKAS+  QS KE+IQEAGQQ+ AKA GAADA+K
Sbjct: 1  MADSSQKMSYQAGEAKGQAEEKASNLMDKASNAAQSAKETIQEAGQQMMAKAQGAADAIK 60

Query: 61 DATTFNK 68
          DAT  NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh02G010850 vs. NCBI nr
Match: gi|449469355|ref|XP_004152386.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 4.9e-17
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 1  MADSSQSLSYQAGEAKGQAQEKASNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVK 60
          MAD+SQ++SYQ GEAKGQAQEKASN+M+KASD  QS KESIQE GQQ+ AKA GAADAVK
Sbjct: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60

Query: 61 DATTFNK 68
          DAT  NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh02G010850 vs. NCBI nr
Match: gi|449469357|ref|XP_004152387.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 6.4e-17
Identity = 52/67 (77.61%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MADSSQSLSYQAGEAKGQAQEKASNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVK 60
          MAD+S+ +SY  GEAKGQAQEKASNLMDKA DT QS KES+QEAGQQ+ AKA GAADAVK
Sbjct: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATTFNK 68
          DAT  NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh02G010850 vs. NCBI nr
Match: gi|590653501|ref|XP_007033439.1| (Late embryogenesis abundant protein family protein [Theobroma cacao])

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-16
Identity = 50/67 (74.63%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 1  MADSSQSLSYQAGEAKGQAQEKASNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVK 60
          MAD+SQS+SY+AGEAKGQAQEKASNLMDKA+D  QS KES+QE GQ++  KAHGA +AVK
Sbjct: 1  MADNSQSMSYKAGEAKGQAQEKASNLMDKAADAAQSAKESMQETGQKMMEKAHGAKEAVK 60

Query: 61 DATTFNK 68
          DAT  NK
Sbjct: 61 DATGMNK 67

The following BLAST results are available for this feature:

BLAST of CmoCh02G010850 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh02G010850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPD4_CUCSA	3.4e-17	77.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1	[more]
A0A0A0KRE1_CUCSA	4.4e-17	77.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165860 PE=4 SV=1	[more]
A0A061EH65_THECC	1.7e-16	74.63	Late embryogenesis abundant protein family protein OS=Theobroma cacao GN=TCM_019...	[more]
A0A0A0KVV6_CUCSA	3.7e-16	73.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643260 PE=4 SV=1	[more]
W9RDZ1_9ROSA	1.9e-15	71.64	Uncharacterized protein OS=Morus notabilis GN=L484_009672 PE=4 SV=1	[more]

BLAST of CmoCh02G010850 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G38760.1	3.7e-15	61.19	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G53820.1	8.3e-15	59.70	Late embryogenesis abundant protein (LEA) family protein	[more]
AT3G02480.1	2.2e-12	55.38	Late embryogenesis abundant protein (LEA) family protein	[more]

BLAST of CmoCh02G010850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659073373\|ref\|XP_008437025.1\|	1.3e-17	79.10	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]
gi\|659119050\|ref\|XP_008459448.1\|	1.3e-17	79.10	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]
gi\|449469355\|ref\|XP_004152386.1\|	4.9e-17	77.61	PREDICTED: stress-induced protein KIN2-like [Cucumis sativus]	[more]
gi\|449469357\|ref\|XP_004152387.1\|	6.4e-17	77.61	PREDICTED: stress-induced protein KIN2-like [Cucumis sativus]	[more]
gi\|590653501\|ref\|XP_007033439.1\|	2.4e-16	74.63	Late embryogenesis abundant protein family protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G010850.1	CmoCh02G010850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 27..47 scor
None	No IPR available	PANTHER	PTHR34191	FAMILY NOT NAMED	coord: 2..67 score: 1.7
None	No IPR available	PANTHER	PTHR34191:SF2	STRESS-INDUCED PROTEIN KIN1-RELATED	coord: 2..67 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G010850	CmaCh02G010670	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G010850	Cp4.1LG05g06520	Cucurbita pepo (Zucchini)	cmocpeB595

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G010850	Silver-seed gourd	carcmoB0971
CmoCh02G010850	Cucumber (Chinese Long) v3	cmocucB0697
CmoCh02G010850	Cucumber (Chinese Long) v3	cmocucB0715
CmoCh02G010850	Watermelon (97103) v2	cmowmbB621
CmoCh02G010850	Wax gourd	cmowgoB0722
CmoCh02G010850	Cucurbita moschata (Rifu)	cmocmoB281
CmoCh02G010850	Cucurbita moschata (Rifu)	cmocmoB333
CmoCh02G010850	Cucumber (Gy14) v1	cgycmoB0250
CmoCh02G010850	Cucurbita maxima (Rimu)	cmacmoB260
CmoCh02G010850	Cucurbita maxima (Rimu)	cmacmoB333
CmoCh02G010850	Cucurbita maxima (Rimu)	cmacmoB416
CmoCh02G010850	Wild cucumber (PI 183967)	cmocpiB589
CmoCh02G010850	Cucumber (Chinese Long) v2	cmocuB583
CmoCh02G010850	Melon (DHL92) v3.5.1	cmomeB567
CmoCh02G010850	Watermelon (Charleston Gray)	cmowcgB557
CmoCh02G010850	Watermelon (Charleston Gray)	cmowcgB560
CmoCh02G010850	Watermelon (97103) v1	cmowmB558
CmoCh02G010850	Cucurbita pepo (Zucchini)	cmocpeB546
CmoCh02G010850	Cucurbita pepo (Zucchini)	cmocpeB557
CmoCh02G010850	Bottle gourd (USVL1VR-Ls)	cmolsiB557
CmoCh02G010850	Bottle gourd (USVL1VR-Ls)	cmolsiB567
CmoCh02G010850	Cucumber (Gy14) v2	cgybcmoB498
CmoCh02G010850	Melon (DHL92) v3.6.1	cmomedB649
CmoCh02G010850	Melon (DHL92) v3.6.1	cmomedB653
CmoCh02G010850	Melon (DHL92) v3.6.1	cmomedB656