CmaCh02G010670 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G010670
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Late embryogenesis abundant protein (LEA) family protein
Location	Cma_Chr02 : 6361572 .. 6362063 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTATTCACCTAACCCTTTCACCTTTCCAACCCTTTTTGACGAAAATGGCAGACAGCTCTCAAAGTTTGAGCTACCAAGCTGGAGAAGCCAAAGGCCAAGCCCAGGTTCACTTTGCCCCTATTTTCTTAAATGCTTCATGCTTGGTGGTCATTTAATCGATGGCTAACATATTGCTTTATATGATTGTGTAGGAGAAGGTGAGTAATTTGATGGACAAGGCCAGTGATACGCTTCAATCAACCAAGGAGTCAATACAAGAGGCCGGACAACAAATAGCGGCTAAGGCTCACGGTGCTGCTGATGCTGTTAAAGACGCCACTAGCTTCAACAAATGAAGCTTCAACATATTAGCTTAGGTTTTCATGAATAAAGGCTTTATCATCCAAATGGAAGCATCTATCGTATTAATTAATTTTCTCTTTAAACGTTGAATTTTGTTAAATTATATGAAATAGAAAATTTGAATCTTAAATTATGTTTGTCATTGTTAG

mRNA sequence

TTTATTCACCTAACCCTTTCACCTTTCCAACCCTTTTTGACGAAAATGGCAGACAGCTCTCAAAGTTTGAGCTACCAAGCTGGAGAAGCCAAAGGCCAAGCCCAGGAGAAGGTGAGTAATTTGATGGACAAGGCCAGTGATACGCTTCAATCAACCAAGGAGTCAATACAAGAGGCCGGACAACAAATAGCGGCTAAGGCTCACGGTGCTGCTGATGCTGTTAAAGACGCCACTAGCTTCAACAAATGAAGCTTCAACATATTAGCTTAGGTTTTCATGAATAAAGGCTTTATCATCCAAATGGAAGCATCTATCGTATTAATTAATTTTCTCTTTAAACGTTGAATTTTGTTAAATTATATGAAATAGAAAATTTGAATCTTAAATTATGTTTGTCATTGTTAG

Coding sequence (CDS)

ATGGCAGACAGCTCTCAAAGTTTGAGCTACCAAGCTGGAGAAGCCAAAGGCCAAGCCCAGGAGAAGGTGAGTAATTTGATGGACAAGGCCAGTGATACGCTTCAATCAACCAAGGAGTCAATACAAGAGGCCGGACAACAAATAGCGGCTAAGGCTCACGGTGCTGCTGATGCTGTTAAAGACGCCACTAGCTTCAACAAATGA

Protein sequence

MADSSQSLSYQAGEAKGQAQEKVSNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVKDATSFNK

Homology

[Close]

BLAST of CmaCh02G010670 vs. TrEMBL
Match: A0A0A0KPD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.4e-17
Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MADSSQSLSYQAGEAKGQAQEKVSNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVK 60
          MAD+SQ++SYQ GEAKGQAQEK SN+M+KASD  QS KESIQE GQQ+ AKA GAADAVK
Sbjct: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60

Query: 61 DATSFNK 68
          DAT  NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmaCh02G010670 vs. TrEMBL
Match: A0A0A0KRE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165860 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.8e-17
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 1


Query: 1  MADSSQSLSYQAGEAKGQAQEKVSNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVK 60
          MAD+S+ +SY  GEAKGQAQEK SNLMDKA DT QS KES+QEAGQQ+ AKA GAADAVK
Sbjct: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATSFNK 68
          DAT  NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmaCh02G010670 vs. TrEMBL
Match: A0A061EH65_THECC (Late embryogenesis abundant protein family protein OS=Theobroma cacao GN=TCM_019635 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.2e-16
Identity = 49/67 (73.13%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MADSSQSLSYQAGEAKGQAQEKVSNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVK 60
          MAD+SQS+SY+AGEAKGQAQEK SNLMDKA+D  QS KES+QE GQ++  KAHGA +AVK
Sbjct: 1  MADNSQSMSYKAGEAKGQAQEKASNLMDKAADAAQSAKESMQETGQKMMEKAHGAKEAVK 60

Query: 61 DATSFNK 68
          DAT  NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmaCh02G010670 vs. TrEMBL
Match: A0A0A0KVV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643260 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.9e-16
Identity = 48/67 (71.64%), Postives = 56/67 (83.58%), Query Frame = 1


Query: 1  MADSSQSLSYQAGEAKGQAQEKVSNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVK 60
          MADSSQ +SYQAGEAKGQ +EK SNLMD A++  QS KE+IQEAGQQ+ AKA GAA+A+K
Sbjct: 1  MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK 60

Query: 61 DATSFNK 68
          DAT  NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmaCh02G010670 vs. TrEMBL
Match: W9RDZ1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009672 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.4e-15
Identity = 47/67 (70.15%), Postives = 56/67 (83.58%), Query Frame = 1


Query: 1  MADSSQSLSYQAGEAKGQAQEKVSNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVK 60
          MADSS+ +SY AGEAKGQA EK SN++DKAS+T QS KES+QEAGQQ+ AKA GA +AVK
Sbjct: 1  MADSSEKISYHAGEAKGQANEKASNILDKASNTAQSAKESVQEAGQQMKAKAQGATEAVK 60

Query: 61 DATSFNK 68
          +AT  NK
Sbjct: 61 NATGINK 67

[Close]

BLAST of CmaCh02G010670 vs. TAIR10
Match: AT5G38760.1 (AT5G38760.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 77.0 bits (188), Expect = 4.8e-15
Identity = 40/67 (59.70%), Postives = 53/67 (79.10%), Query Frame = 1


Query: 1  MADSSQSLSYQAGEAKGQAQEKVSNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVK 60
          M+ +SQ++S+QAG+AKGQ QEK S +MDKAS+  QS KES++E GQQI  KA GA ++VK
Sbjct: 1  MSSNSQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVK 60

Query: 61 DATSFNK 68
          +AT  NK
Sbjct: 61 NATGMNK 67

[Close]

BLAST of CmaCh02G010670 vs. TAIR10
Match: AT5G53820.1 (AT5G53820.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-14
Identity = 39/67 (58.21%), Postives = 53/67 (79.10%), Query Frame = 1


Query: 1  MADSSQSLSYQAGEAKGQAQEKVSNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVK 60
          M+++SQS+S+ AG+AKGQ QEK SNL+DKAS+  QS KESIQE GQQ+  KA GA++ +K
Sbjct: 1  MSNNSQSMSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIK 60

Query: 61 DATSFNK 68
          + T  +K
Sbjct: 61 EKTGISK 67

[Close]

BLAST of CmaCh02G010670 vs. TAIR10
Match: AT3G02480.1 (AT3G02480.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 67.8 bits (164), Expect = 2.9e-12
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 1


Query: 3  DSSQSLSYQAGEAKGQAQEKVSNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVKDA 62
          D+ Q+ SYQAG+A GQ +EK   +MDKA D   S ++S+Q+ GQQ+  KA GAAD VKD 
Sbjct: 2  DNKQNASYQAGQATGQTKEKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQGAADVVKDK 61

Query: 63 TSFNK 68
          T  NK
Sbjct: 62 TGMNK 66

[Close]

BLAST of CmaCh02G010670 vs. TAIR10
Match: AT1G52690.1 (AT1G52690.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 46.2 bits (108), Expect = 9.1e-06
Identity = 27/61 (44.26%), Postives = 33/61 (54.10%), Query Frame = 1


Query: 4  SSQSLSYQAGEAKGQAQEKVSNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVKDAT 63
          S Q  SY+AGE +G+AQEK    M    D  Q+ K+  QE  Q    KAH  A + KD T
Sbjct: 3  SHQEQSYKAGETRGKAQEKTGEAMGTMGDKTQAAKDKTQETAQSAQQKAHETAQSAKDKT 62

Query: 64 S 65
          S
Sbjct: 63 S 63

[Close]

BLAST of CmaCh02G010670 vs. NCBI nr
Match: gi|659073373|ref|XP_008437025.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-17
Identity = 52/67 (77.61%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MADSSQSLSYQAGEAKGQAQEKVSNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVK 60
          MAD+SQ +SY  GEAKGQAQEK SN+MDKASDT QS KES+QEAGQQ+ AKA GAADAVK
Sbjct: 1  MADNSQKMSYHVGEAKGQAQEKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATSFNK 68
          DAT  NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmaCh02G010670 vs. NCBI nr
Match: gi|659119050|ref|XP_008459448.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-17
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 1  MADSSQSLSYQAGEAKGQAQEKVSNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVK 60
          MADSSQ +SYQAGEAKGQA+EK SNLMDKAS+  QS KE+IQEAGQQ+ AKA GAADA+K
Sbjct: 1  MADSSQKMSYQAGEAKGQAEEKASNLMDKASNAAQSAKETIQEAGQQMMAKAQGAADAIK 60

Query: 61 DATSFNK 68
          DAT  NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmaCh02G010670 vs. NCBI nr
Match: gi|449469355|ref|XP_004152386.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 6.4e-17
Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MADSSQSLSYQAGEAKGQAQEKVSNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVK 60
          MAD+SQ++SYQ GEAKGQAQEK SN+M+KASD  QS KESIQE GQQ+ AKA GAADAVK
Sbjct: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60

Query: 61 DATSFNK 68
          DAT  NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmaCh02G010670 vs. NCBI nr
Match: gi|449469357|ref|XP_004152387.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 8.3e-17
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 1


Query: 1  MADSSQSLSYQAGEAKGQAQEKVSNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVK 60
          MAD+S+ +SY  GEAKGQAQEK SNLMDKA DT QS KES+QEAGQQ+ AKA GAADAVK
Sbjct: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATSFNK 68
          DAT  NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmaCh02G010670 vs. NCBI nr
Match: gi|590653501|ref|XP_007033439.1| (Late embryogenesis abundant protein family protein [Theobroma cacao])

HSP 1 Score: 92.4 bits (228), Expect = 3.2e-16
Identity = 49/67 (73.13%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MADSSQSLSYQAGEAKGQAQEKVSNLMDKASDTLQSTKESIQEAGQQIAAKAHGAADAVK 60
          MAD+SQS+SY+AGEAKGQAQEK SNLMDKA+D  QS KES+QE GQ++  KAHGA +AVK
Sbjct: 1  MADNSQSMSYKAGEAKGQAQEKASNLMDKAADAAQSAKESMQETGQKMMEKAHGAKEAVK 60

Query: 61 DATSFNK 68
          DAT  NK
Sbjct: 61 DATGMNK 67

The following BLAST results are available for this feature:

BLAST of CmaCh02G010670 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh02G010670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPD4_CUCSA	4.4e-17	76.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1	[more]
A0A0A0KRE1_CUCSA	5.8e-17	76.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165860 PE=4 SV=1	[more]
A0A061EH65_THECC	2.2e-16	73.13	Late embryogenesis abundant protein family protein OS=Theobroma cacao GN=TCM_019...	[more]
A0A0A0KVV6_CUCSA	4.9e-16	71.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643260 PE=4 SV=1	[more]
W9RDZ1_9ROSA	2.4e-15	70.15	Uncharacterized protein OS=Morus notabilis GN=L484_009672 PE=4 SV=1	[more]

BLAST of CmaCh02G010670 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G38760.1	4.8e-15	59.70	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G53820.1	1.1e-14	58.21	Late embryogenesis abundant protein (LEA) family protein	[more]
AT3G02480.1	2.9e-12	53.85	Late embryogenesis abundant protein (LEA) family protein	[more]
AT1G52690.1	9.1e-06	44.26	Late embryogenesis abundant protein (LEA) family protein	[more]

BLAST of CmaCh02G010670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659073373\|ref\|XP_008437025.1\|	1.7e-17	77.61	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]
gi\|659119050\|ref\|XP_008459448.1\|	1.7e-17	77.61	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]
gi\|449469355\|ref\|XP_004152386.1\|	6.4e-17	76.12	PREDICTED: stress-induced protein KIN2-like [Cucumis sativus]	[more]
gi\|449469357\|ref\|XP_004152387.1\|	8.3e-17	76.12	PREDICTED: stress-induced protein KIN2-like [Cucumis sativus]	[more]
gi\|590653501\|ref\|XP_007033439.1\|	3.2e-16	73.13	Late embryogenesis abundant protein family protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G010670.1	CmaCh02G010670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 27..47 scor
None	No IPR available	PANTHER	PTHR34191	FAMILY NOT NAMED	coord: 2..67 score: 2.1
None	No IPR available	PANTHER	PTHR34191:SF2	STRESS-INDUCED PROTEIN KIN1-RELATED	coord: 2..67 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh02G010670	CmoCh02G010850	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G010670	Cp4.1LG05g06520	Cucurbita pepo (Zucchini)	cmacpeB646

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G010670	Wax gourd	cmawgoB0723
CmaCh02G010670	Wax gourd	cmawgoB0729
CmaCh02G010670	Cucurbita maxima (Rimu)	cmacmaB263
CmaCh02G010670	Cucurbita maxima (Rimu)	cmacmaB346
CmaCh02G010670	Cucurbita maxima (Rimu)	cmacmaB396
CmaCh02G010670	Cucumber (Gy14) v1	cgycmaB0251
CmaCh02G010670	Cucurbita moschata (Rifu)	cmacmoB587
CmaCh02G010670	Cucurbita moschata (Rifu)	cmacmoB591
CmaCh02G010670	Wild cucumber (PI 183967)	cmacpiB601
CmaCh02G010670	Wild cucumber (PI 183967)	cmacpiB611
CmaCh02G010670	Cucumber (Chinese Long) v2	cmacuB596
CmaCh02G010670	Melon (DHL92) v3.5.1	cmameB579
CmaCh02G010670	Watermelon (Charleston Gray)	cmawcgB559
CmaCh02G010670	Watermelon (Charleston Gray)	cmawcgB563
CmaCh02G010670	Watermelon (97103) v1	cmawmB564
CmaCh02G010670	Cucurbita pepo (Zucchini)	cmacpeB598
CmaCh02G010670	Cucurbita pepo (Zucchini)	cmacpeB608
CmaCh02G010670	Cucurbita pepo (Zucchini)	cmacpeB639
CmaCh02G010670	Bottle gourd (USVL1VR-Ls)	cmalsiB583
CmaCh02G010670	Bottle gourd (USVL1VR-Ls)	cmalsiB587
CmaCh02G010670	Cucumber (Gy14) v2	cgybcmaB394
CmaCh02G010670	Cucumber (Gy14) v2	cgybcmaB526
CmaCh02G010670	Cucumber (Gy14) v2	cgybcmaB644
CmaCh02G010670	Melon (DHL92) v3.6.1	cmamedB661
CmaCh02G010670	Melon (DHL92) v3.6.1	cmamedB664
CmaCh02G010670	Melon (DHL92) v3.6.1	cmamedB666
CmaCh02G010670	Silver-seed gourd	carcmaB0999
CmaCh02G010670	Cucumber (Chinese Long) v3	cmacucB0711
CmaCh02G010670	Cucumber (Chinese Long) v3	cmacucB0727
CmaCh02G010670	Watermelon (97103) v2	cmawmbB649