CmoCh02G002250 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G002250
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Carbohydrate-binding X8 domain-containing protein) (Similarity to beta-1)
Location	Cmo_Chr02 : 1040235 .. 1044091 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAATAATCAGAAACGCCCGAAACCCCATTTGAAGGAAGGTGTGCTGCTGTTTCCAAGTACTTAGATTTGAAAAATATTGTATATTCCCATGTATACAACAATTTGTCTTAAGTTATGTAGTTGCTGTTGTTACTTATGCAATGTTCTGTTCTGTTGTATATTTGTACATCATTTCTGTAAGCCTGCAATGTAGCAAAAGAGTAGTAGATGATCACTTTTATTGCATCTTCAACTTGAGTTATGCTTCTCTTTTATTTGTTTTACTTTTATGTCTAATCTGAGAAAGGGTTCGTCTGGTAACTGCCCAAGTCCATTGCTAGTAGATATTGTCCTTTTTAGGTTTTTTCTTTCGAATTTTCTCTCAAGATTTTTAAACGCGTCTACTAGGGAGAGATTTCCACACCCTTATAAAGAATGCTTCGTTCTACTAGTTGAGGTAAGATCTCACAATCCACCCTCTTTGAGGCTCAGCATCATCGCTAGCACTCCTTCCTTTCTCCAATCGATGTGAGACCCCCCCCTCCTCCAATCCTCTCCCTTCAAGGCCCAGTGTCCTCGTTGACATACCACTTCGTGTCCACCGTCCTTCAGGGCTTAGCCTCTTCATTGGCACATCGTTCGATGTCTGGCTCTGATATCATTTGTAACAACTCAAGCTCATTGCTAGCAGATATTGTTCTCTTCTTTCCCTTTCGGACTTCCCCTCAAGTTTTAAAACGTGTTTGTTAGGGAGATGTTTCCACACCTTTATAAAGAATGCTTCGTTTGGCTCTGATATCATTTGTAATAGCCCAAACCCACTGCTAGCAGATATTGTTCTCTTCTTTCCCTTTCGGGCTTCCCCTCAAGTTTTTTAAAACGTGTTTGTCAAGGAGATGTTTCCACACCTTTACAAAAAATGCTTCGTCTGACTCTGATATCATTTGTAACAGCCCAAGCCCACTGCTAGCAGATATTATTCTCTCCTTTCCTTTTCGGGCTTCCCCTCAAGTTTTTAAAAATGTGTTTGTTAGGGAGATATTTCCCACATTTATAAAAAATGTTTCGTTCTCCTCTCAACCGAGGTGGGATCTCACACTTCTACCACCCACTGAATACTGAGATGATTCAGGCTTCAGCACTAGAAAGTAGAATGAAGCACCTTTTGATACTTCCCATTAAAAGTAAAGTATGTTATGTGGATATTAAGCAGTGGGTCGAGGATAGGGATGCGAGGTTGGGGATGCACTCTCTGTCTCCATCCTCGATGCTACAAAGAACGTTGTTTCATTCTCTGTGGTCCCATTCTCTAACATAGAGAATTGGAATCACGAGGGAGCTCTAATCTCAATCTACATTTGGCCAATCTTATAAAGATTTTTGTATCTGTTCTTTGAGATTTGATGTGAAAAACAATTACGCACTAAAACATATACTGTTTTCACTTCCAAAATCATGATTTCCCTTAGCATAGCTTTGTTTGTACAAAACAAACTCTATTTTATATGGAAAATCAATTGCTTTGCTCGATTAATTGTATGTAGAAACATCAGCACATGGGCTAGCAGCGCATCAGCACATGGGCTAGCAGCGCATAGACAGATGCGTTCAAGATGTCACTGTTTGTGGCCATTTTACTTTCTTACTCGAAGAGAACACTCTGTTTCTCTTGTTAGGCTAGGGAGACTGCTGCGTATTTATAGCTTACTCAACCGTCATATTATCATAAATAGTAAATAGATATGTATAGTAAAGAGCTAGTAAAGCTATATATGATAGATAGTTATAAATAGTAGATGGTTATATCGGTTAAAGTTATATATAGTAAGCTGAACCGTATATATATATATATATATATATATATCCCTTGGACAAAATTTAAAATGTACTTTCTGTATTCTCTGTCCTGTTCTTTGTGTTCATCTCGATTGAGTCTGTTGTGTGATATTAATATCTCTCAGTTTCTCCTGGTTTCTCTGCCATGGCTGCTCTGTGGACAGGTACCCTGCTCACTCTGGCTCTGCTATTACTGTCAACAATTCAGCATAAAGCAGGTAACCACCAATACCCATTTGAAATTTTAAGTCAATAAATGCTTAGTATTATGAAACTTACTTCCAGACAATGAACTCTGAGTAGGTGGGGAGTTTGAGCAATGGTGTATAGCAGACGAGCAGACCCCAGATGATGAACTACAAATGGCTTTGGATTGGGCTTGTGGAAGAGGAGGCGGCAACTGCAGCAAAATCCAACCAAACCAGCCTTGTTTTAACCCAAATACAGTGAAAGATCATGCTTCATTTGCCTTCAATGCTTACTTTCAGAACTTCAAGCATCAGGGTGGATCCTGTTTCTTCAAAGGAGCTGCCATCATTACAGAGCTGGATCCTAGTAAGCCTCACTTTCACTTTCTACTATCTTAATCACTCTTTCTTTCTGGTAAATTGCAAAAGTCACCATGGCCATGCTTCTTCAAGGAGTTGTCCGATCTTGGAGAGGAGAAAGAAACCTTCCTTCTAAGGGTGTGGAAACCTCTCCCTAACAGATGCGTTTTAAAACTGTGAGGTTGACAATGATAGTAACGGGCCAAAGTAGACACTGTTTGCCAGCAGTGAGTTTAGATTATTACAAATGGTATTAGAGCTAGGCACCGAGTGGTGTGCCAACGAAGATGCTGGCCCCTAAGGGGGTGGATTGTGAGATCTCACATCGGTGGGAGAGGAGAATGAAACATTCCTTATAAAGGTGTGGAAACCTCTCCCTAATAGATGCGTTTTAAAACCATGAGACTGATAACGATACATAACTTGCCAAAGTGGAGAATATTTGCTAACGGTGAGTTTGAGCTATTACAAATGATATTAGAGCTAGGCGCCGAGCGGTGTGCCAGCGAGGACGCTAGGCCCCCAAGGGGGTGGATTGTGAGATCCCACATCGGTTGAAGAGAGGAATGGAACATTCCTTATAAGGGTGTGGAAGAGATCCCACATCGGTTGGATAGAGGAATTGAACATTCCTTATGAGGGTGTGGAAACCTCTCCCTAATAGACGCGTATTAAAACAACGATACGTAATGGACTGAAGTAGACAATCTCTACTGGCGGTGTGCTTGAGGTGTATGCATTTGTCTTTTTACATTATTGAGAGGATAACGTGAACCCATGTGGAAGCCATGAAGCATGTTGGATTTGATTATGTTTTACTTCCATTTTCTTCATTTCTATTAACAATGATTCTGAACTAAAATATTAGAAAGTAAGTTTAAGCTTAAAAGAGTGACTTCGTTTCATTATTACCTCGAGCTCGTCAAAGATCGTTATCAGTCTAATTTGTCATTATTTTAATCTAGGCTCGCTTTTTTTTAAAACCTAGCTATGTTTATAAACTTAGTTTTCAAAAACTAAATAGTTATCAAACGAAACGTCCCCATTTGTCTCAAGCTGAATTGCCCCTCCAGCCTCGTTCTCATTGCAATGAAACTGAAACAGAAAGGAAAGATAGTTCACATCAATCGATATCTTTCTCGTGTTTCTAAAAGATGAGACTTTTTTTTTTTTTTTTTTAAGTTCAACAACATGTAGGGCGGAAGATTTGAATGTCTGATATCTTATTATATGCTTTAACGGTTAAACTATGTTAAAGTTGATTGATAAAGTCGAAATTGGTTATTTAGTTTGGTATGTTGATGAGCATGATTAGCTGGGCTTGAGTTTTTCGTCTTATACATGTTTTGGTACAGGCCATGGTTCTTGCCAATACGAGTTTATTCCATAGTGAGAAGGCGAATTAGAAGAGATCACTGTTTCTGTTACTTGGTTGTTTCTGATATCCATGTAAACTGGCAAGACGGTCTCAATCGCTTTTAGAGCTTCG

mRNA sequence

ATGTCGAATAATCAGAAACGCCCGAAACCCCATTTGAAGGAAGGTGGGGAGTTTGAGCAATGGTGTATAGCAGACGAGCAGACCCCAGATGATGAACTACAAATGGCTTTGGATTGGGCTTGTGGAAGAGGAGGCGGCAACTGCAGCAAAATCCAACCAAACCAGCCTTGTTTTAACCCAAATACAGTGAAAGATCATGCTTCATTTGCCTTCAATGCTTACTTTCAGAACTTCAAGCATCAGGGTGGATCCTGTTTCTTCAAAGGAGCTGCCATCATTACAGAGCTGGATCCTAGCCATGGTTCTTGCCAATACGAGTTTATTCCATAGTGAGAAGGCGAATTAGAAGAGATCACTGTTTCTGTTACTTGGTTGTTTCTGATATCCATGTAAACTGGCAAGACGGTCTCAATCGCTTTTAGAGCTTCG

Coding sequence (CDS)

ATGTCGAATAATCAGAAACGCCCGAAACCCCATTTGAAGGAAGGTGGGGAGTTTGAGCAATGGTGTATAGCAGACGAGCAGACCCCAGATGATGAACTACAAATGGCTTTGGATTGGGCTTGTGGAAGAGGAGGCGGCAACTGCAGCAAAATCCAACCAAACCAGCCTTGTTTTAACCCAAATACAGTGAAAGATCATGCTTCATTTGCCTTCAATGCTTACTTTCAGAACTTCAAGCATCAGGGTGGATCCTGTTTCTTCAAAGGAGCTGCCATCATTACAGAGCTGGATCCTAGCCATGGTTCTTGCCAATACGAGTTTATTCCATAG

Homology

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BLAST of CmoCh02G002250 vs. Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.9e-24
Identity = 48/95 (50.53%), Postives = 61/95 (64.21%), Query Frame = 1


Query: 15  GGEFEQWCIADEQTPDDELQMALDWACGRGGGNCSKIQPNQPCFNPNTVKDHASFAFNAY 74
           GG  ++WCIA  Q    ELQ ALDWACG G  +CS +QP+QPCF P+TV  HAS+AFN Y
Sbjct: 385 GGGTKKWCIASSQASVTELQTALDWACGPGNVDCSAVQPDQPCFEPDTVLSHASYAFNTY 444

Query: 75  FQNFKHQGGSCFFKGAAIITELDPSHGSCQYEFIP 110
           +Q        C F GA++  + DPS+G+C Y   P
Sbjct: 445 YQQSGASSIDCSFNGASVEVDKDPSYGNCLYMIAP 479

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BLAST of CmoCh02G002250 vs. Swiss-Prot
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3)

HSP 1 Score: 110.9 bits (276), Expect = 8.7e-24
Identity = 49/85 (57.65%), Postives = 58/85 (68.24%), Query Frame = 1


Query: 19  EQWCIADEQTPDDELQMALDWACGRGGGNCSKIQPNQPCFNPNTVKDHASFAFNAYFQNF 78
           + +CIA +      LQ ALDWACG G  NCS+IQP + C+ PN VK HASFAFN+Y+Q  
Sbjct: 379 QTYCIAMDGVDAKTLQAALDWACGPGRSNCSEIQPGESCYQPNNVKGHASFAFNSYYQKE 438

Query: 79  KHQGGSCFFKGAAIITELDPSHGSC 104
               GSC FKG A+IT  DPSHGSC
Sbjct: 439 GRASGSCDFKGVAMITTTDPSHGSC 463

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BLAST of CmoCh02G002250 vs. Swiss-Prot
Match: E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.7e-23
Identity = 46/85 (54.12%), Postives = 57/85 (67.06%), Query Frame = 1


Query: 21  WCIADEQTPDDELQMALDWACGRGGGNCSKIQPNQPCFNPNTVKDHASFAFNAYFQNFKH 80
           +C+A     DD+L   L+WACG+G  NC+ IQP QPC+ PN VK HASFAFN Y+Q  K 
Sbjct: 362 FCVAKADADDDKLVDGLNWACGQGRANCAAIQPGQPCYLPNDVKSHASFAFNDYYQKMKS 421

Query: 81  QGGSCFFKGAAIITELDPSHGSCQY 106
            GG+C F G AI T  DPS+ +C Y
Sbjct: 422 AGGTCDFDGTAITTTRDPSYRTCAY 446

[Close]

BLAST of CmoCh02G002250 vs. Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.6e-20
Identity = 42/90 (46.67%), Postives = 56/90 (62.22%), Query Frame = 1


Query: 16  GEFEQWCIADEQTPDDELQMALDWACGRGGGNCSKIQPNQPCFNPNTVKDHASFAFNAYF 75
           G    WCIA  +  + +L+ ALDWACG G  +C+ IQP+QPCF P+T+  HASF FN+YF
Sbjct: 364 GSSNSWCIASSKASERDLKGALDWACGPGNVDCTAIQPSQPCFQPDTLVSHASFVFNSYF 423

Query: 76  QNFKHQGGSCFFKGAAIITELDPSHGSCQY 106
           Q  +    +C F GA +    DPS+  C Y
Sbjct: 424 QQNRATDVACSFGGAGVKVNKDPSYDKCIY 453

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BLAST of CmoCh02G002250 vs. Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 5.5e-18
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 1


Query: 19  EQWCIADEQTPDDELQMALDWACGRGGGNCSKIQPNQPCFNPNTVKDHASFAFNAYFQNF 78
           + +CIA E+     LQ ALDWACG G  +CS +   + C+ P+ V  H+++AFNAY+Q  
Sbjct: 358 QTFCIAKEKVDRKMLQAALDWACGPGKVDCSALMQGESCYEPDDVVAHSTYAFNAYYQKM 417

Query: 79  KHQGGSCFFKGAAIITELDPSHGSCQY 106
               GSC FKG A +T  DPS G+C +
Sbjct: 418 GKASGSCDFKGVATVTTTDPSRGTCVF 444

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BLAST of CmoCh02G002250 vs. TrEMBL
Match: A0A0A0KDX6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G110840 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 2.6e-51
Identity = 91/99 (91.92%), Postives = 93/99 (93.94%), Query Frame = 1


Query: 11  HLKEGGEFEQWCIADEQTPDDELQMALDWACGRGGGNCSKIQPNQPCFNPNTVKDHASFA 70
           H   GGEFEQWC+ADEQTPDDELQMALDWACGRGG NCS IQPNQPCFNPNTVKDHASFA
Sbjct: 19  HQNTGGEFEQWCVADEQTPDDELQMALDWACGRGGANCSSIQPNQPCFNPNTVKDHASFA 78

Query: 71  FNAYFQNFKHQGGSCFFKGAAIITELDPSHGSCQYEFIP 110
           FN YFQ+FKHQGGSCFFKGAAIITELDPSHGSCQYEFIP
Sbjct: 79  FNNYFQSFKHQGGSCFFKGAAIITELDPSHGSCQYEFIP 117

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BLAST of CmoCh02G002250 vs. TrEMBL
Match: B9IAQ9_POPTR (Glycosyl hydrolase family protein OS=Populus trichocarpa GN=POPTR_0014s16250g PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.0e-43
Identity = 79/97 (81.44%), Postives = 87/97 (89.69%), Query Frame = 1


Query: 13  KEGGEFEQWCIADEQTPDDELQMALDWACGRGGGNCSKIQPNQPCFNPNTVKDHASFAFN 72
           K  GE EQWCIADEQTPDDELQ+ALDWACG+GG +CSKIQ NQPC+ PNTV+DHAS+AFN
Sbjct: 21  KSDGELEQWCIADEQTPDDELQIALDWACGKGGADCSKIQVNQPCYLPNTVRDHASYAFN 80

Query: 73  AYFQNFKHQGGSCFFKGAAIITELDPSHGSCQYEFIP 110
            YFQ FKH+GGSC+FKGAAIITELDPSH SCQYEF P
Sbjct: 81  NYFQKFKHKGGSCYFKGAAIITELDPSHSSCQYEFHP 117

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BLAST of CmoCh02G002250 vs. TrEMBL
Match: M5XAQ0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025080mg PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 7.6e-43
Identity = 76/97 (78.35%), Postives = 86/97 (88.66%), Query Frame = 1


Query: 13  KEGGEFEQWCIADEQTPDDELQMALDWACGRGGGNCSKIQPNQPCFNPNTVKDHASFAFN 72
           K G EFEQWC+ADEQTPDDELQ A+DWACG GG +CSKIQ NQPC+ PNT+KDHAS+AFN
Sbjct: 21  KSGAEFEQWCVADEQTPDDELQAAMDWACGGGGADCSKIQVNQPCYFPNTLKDHASYAFN 80

Query: 73  AYFQNFKHQGGSCFFKGAAIITELDPSHGSCQYEFIP 110
           +YFQ FKH+GGSC+FK AA+ITELDPSH SC YEFIP
Sbjct: 81  SYFQKFKHKGGSCYFKAAALITELDPSHASCHYEFIP 117

[Close]

BLAST of CmoCh02G002250 vs. TrEMBL
Match: A0A061DL58_THECC (Glycosyl hydrolase 1 OS=Theobroma cacao GN=TCM_002325 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.7e-42
Identity = 77/97 (79.38%), Postives = 88/97 (90.72%), Query Frame = 1


Query: 13  KEGGEFEQWCIADEQTPDDELQMALDWACGRGGGNCSKIQPNQPCFNPNTVKDHASFAFN 72
           K  GEFEQWCIADEQTPDDELQ ALDWACG+GG +CSKIQ NQPC+ PNT+++HAS+AFN
Sbjct: 21  KSVGEFEQWCIADEQTPDDELQAALDWACGKGGADCSKIQVNQPCYFPNTMRNHASYAFN 80

Query: 73  AYFQNFKHQGGSCFFKGAAIITELDPSHGSCQYEFIP 110
            YFQ FKH+GGSC+FKGAA+ITELDPS+ SCQYEFIP
Sbjct: 81  DYFQKFKHKGGSCYFKGAAMITELDPSYNSCQYEFIP 117

[Close]

BLAST of CmoCh02G002250 vs. TrEMBL
Match: A0A067K4D2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18472 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 6.5e-42
Identity = 77/98 (78.57%), Postives = 85/98 (86.73%), Query Frame = 1


Query: 12  LKEGGEFEQWCIADEQTPDDELQMALDWACGRGGGNCSKIQPNQPCFNPNTVKDHASFAF 71
           LK  GE EQWCIADEQTPD+ELQMALDWACGRGG +CS IQ N+PC+ PNTV+ HASFAF
Sbjct: 21  LKSDGELEQWCIADEQTPDEELQMALDWACGRGGADCSMIQVNKPCYFPNTVRAHASFAF 80

Query: 72  NAYFQNFKHQGGSCFFKGAAIITELDPSHGSCQYEFIP 110
           N+YFQ FKH GGSC+F+GAAI TELDPSH SC YEFIP
Sbjct: 81  NSYFQKFKHNGGSCYFRGAAISTELDPSHDSCHYEFIP 118

[Close]

BLAST of CmoCh02G002250 vs. TAIR10
Match: AT5G35740.1 (AT5G35740.1 Carbohydrate-binding X8 domain superfamily protein)

HSP 1 Score: 170.6 bits (431), Expect = 5.2e-43
Identity = 73/94 (77.66%), Postives = 86/94 (91.49%), Query Frame = 1


Query: 17  EFEQWCIADEQTPDDELQMALDWACGRGGGNCSKIQP-NQPCFNPNTVKDHASFAFNAYF 76
           E EQWCIADEQTPDDELQ ALDWACG+GG +CSK+Q  NQPCF PNT++DHASFAFN+Y+
Sbjct: 26  ESEQWCIADEQTPDDELQAALDWACGKGGADCSKMQQENQPCFLPNTIRDHASFAFNSYY 85

Query: 77  QNFKHQGGSCFFKGAAIITELDPSHGSCQYEFIP 110
           Q +K++GGSC+FKGAA+ITELDPSHGSCQYE+ P
Sbjct: 86  QTYKNKGGSCYFKGAAMITELDPSHGSCQYEYNP 119

[Close]

BLAST of CmoCh02G002250 vs. TAIR10
Match: AT2G04910.1 (AT2G04910.1 Carbohydrate-binding X8 domain superfamily protein)

HSP 1 Score: 125.2 bits (313), Expect = 2.5e-29
Identity = 53/83 (63.86%), Postives = 61/83 (73.49%), Query Frame = 1


Query: 17  EFEQWCIADEQTPDDELQMALDWACGRGGGNCSKIQPNQPCFNPNTVKDHASFAFNAYFQ 76
           EF QWC+AD Q PD+ +Q A+DWAC  GG +CS IQPNQPCF PNTVKDHAS  FN Y+Q
Sbjct: 11  EFGQWCVADGQIPDNVIQAAVDWACQTGGADCSTIQPNQPCFLPNTVKDHASVVFNNYYQ 70

Query: 77  NFKHQGGSCFFKGAAIITELDPS 100
            +K  GGSC F   A IT+ DPS
Sbjct: 71  RYKRNGGSCNFNSTAFITQTDPS 93

[Close]

BLAST of CmoCh02G002250 vs. TAIR10
Match: AT4G29360.1 (AT4G29360.1 O-Glycosyl hydrolases family 17 protein)

HSP 1 Score: 112.1 bits (279), Expect = 2.2e-25
Identity = 48/95 (50.53%), Postives = 61/95 (64.21%), Query Frame = 1


Query: 15  GGEFEQWCIADEQTPDDELQMALDWACGRGGGNCSKIQPNQPCFNPNTVKDHASFAFNAY 74
           GG  ++WCIA  Q    ELQ ALDWACG G  +CS +QP+QPCF P+TV  HAS+AFN Y
Sbjct: 385 GGGTKKWCIASSQASVTELQTALDWACGPGNVDCSAVQPDQPCFEPDTVLSHASYAFNTY 444

Query: 75  FQNFKHQGGSCFFKGAAIITELDPSHGSCQYEFIP 110
           +Q        C F GA++  + DPS+G+C Y   P
Sbjct: 445 YQQSGASSIDCSFNGASVEVDKDPSYGNCLYMIAP 479

[Close]

BLAST of CmoCh02G002250 vs. TAIR10
Match: AT1G11820.2 (AT1G11820.2 O-Glycosyl hydrolases family 17 protein)

HSP 1 Score: 110.9 bits (276), Expect = 4.9e-25
Identity = 49/85 (57.65%), Postives = 58/85 (68.24%), Query Frame = 1


Query: 19  EQWCIADEQTPDDELQMALDWACGRGGGNCSKIQPNQPCFNPNTVKDHASFAFNAYFQNF 78
           + +CIA +      LQ ALDWACG G  NCS+IQP + C+ PN VK HASFAFN+Y+Q  
Sbjct: 379 QTYCIAMDGVDAKTLQAALDWACGPGRSNCSEIQPGESCYQPNNVKGHASFAFNSYYQKE 438

Query: 79  KHQGGSCFFKGAAIITELDPSHGSC 104
               GSC FKG A+IT  DPSHGSC
Sbjct: 439 GRASGSCDFKGVAMITTTDPSHGSC 463

[Close]

BLAST of CmoCh02G002250 vs. TAIR10
Match: AT3G13560.1 (AT3G13560.1 O-Glycosyl hydrolases family 17 protein)

HSP 1 Score: 108.2 bits (269), Expect = 3.2e-24
Identity = 46/85 (54.12%), Postives = 57/85 (67.06%), Query Frame = 1


Query: 21  WCIADEQTPDDELQMALDWACGRGGGNCSKIQPNQPCFNPNTVKDHASFAFNAYFQNFKH 80
           +C+A     DD+L   L+WACG+G  NC+ IQP QPC+ PN VK HASFAFN Y+Q  K 
Sbjct: 362 FCVAKADADDDKLVDGLNWACGQGRANCAAIQPGQPCYLPNDVKSHASFAFNDYYQKMKS 421

Query: 81  QGGSCFFKGAAIITELDPSHGSCQY 106
            GG+C F G AI T  DPS+ +C Y
Sbjct: 422 AGGTCDFDGTAITTTRDPSYRTCAY 446

[Close]

BLAST of CmoCh02G002250 vs. NCBI nr
Match: gi|449444496|ref|XP_004140010.1| (PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 3.8e-51
Identity = 91/99 (91.92%), Postives = 93/99 (93.94%), Query Frame = 1


Query: 11  HLKEGGEFEQWCIADEQTPDDELQMALDWACGRGGGNCSKIQPNQPCFNPNTVKDHASFA 70
           H   GGEFEQWC+ADEQTPDDELQMALDWACGRGG NCS IQPNQPCFNPNTVKDHASFA
Sbjct: 19  HQNTGGEFEQWCVADEQTPDDELQMALDWACGRGGANCSSIQPNQPCFNPNTVKDHASFA 78

Query: 71  FNAYFQNFKHQGGSCFFKGAAIITELDPSHGSCQYEFIP 110
           FN YFQ+FKHQGGSCFFKGAAIITELDPSHGSCQYEFIP
Sbjct: 79  FNNYFQSFKHQGGSCFFKGAAIITELDPSHGSCQYEFIP 117

[Close]

BLAST of CmoCh02G002250 vs. NCBI nr
Match: gi|659128386|ref|XP_008464180.1| (PREDICTED: glucan endo-1,3-beta-glucosidase 12 isoform X1 [Cucumis melo])

HSP 1 Score: 205.7 bits (522), Expect = 4.2e-50
Identity = 89/99 (89.90%), Postives = 92/99 (92.93%), Query Frame = 1


Query: 11  HLKEGGEFEQWCIADEQTPDDELQMALDWACGRGGGNCSKIQPNQPCFNPNTVKDHASFA 70
           H   GGEFEQWC+ADEQ PDDELQMALDWACG+GG NCS IQPNQPCFNPNTVKDHASFA
Sbjct: 19  HQNTGGEFEQWCVADEQIPDDELQMALDWACGKGGANCSSIQPNQPCFNPNTVKDHASFA 78

Query: 71  FNAYFQNFKHQGGSCFFKGAAIITELDPSHGSCQYEFIP 110
           FN YFQ+FKHQGGSCFFKGAAIITELDPSHGSCQYEFIP
Sbjct: 79  FNNYFQSFKHQGGSCFFKGAAIITELDPSHGSCQYEFIP 117

[Close]

BLAST of CmoCh02G002250 vs. NCBI nr
Match: gi|659128388|ref|XP_008464181.1| (PREDICTED: glucan endo-1,3-beta-glucosidase 12 isoform X2 [Cucumis melo])

HSP 1 Score: 204.1 bits (518), Expect = 1.2e-49
Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 1


Query: 10  PHLKEGGEFEQWCIADEQTPDDELQMALDWACGRGGGNCSKIQPNQPCFNPNTVKDHASF 69
           P +  GGEFEQWC+ADEQ PDDELQMALDWACG+GG NCS IQPNQPCFNPNTVKDHASF
Sbjct: 14  PLIFGGGEFEQWCVADEQIPDDELQMALDWACGKGGANCSSIQPNQPCFNPNTVKDHASF 73

Query: 70  AFNAYFQNFKHQGGSCFFKGAAIITELDPSHGSCQYEFIP 110
           AFN YFQ+FKHQGGSCFFKGAAIITELDPSHGSCQYEFIP
Sbjct: 74  AFNNYFQSFKHQGGSCFFKGAAIITELDPSHGSCQYEFIP 113

[Close]

BLAST of CmoCh02G002250 vs. NCBI nr
Match: gi|743910855|ref|XP_011048952.1| (PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Populus euphratica])

HSP 1 Score: 184.5 bits (467), Expect = 9.9e-44
Identity = 80/97 (82.47%), Postives = 87/97 (89.69%), Query Frame = 1


Query: 13  KEGGEFEQWCIADEQTPDDELQMALDWACGRGGGNCSKIQPNQPCFNPNTVKDHASFAFN 72
           K  GE EQWCIADEQTPDDELQ ALDWACG+GG +CSKIQ NQPC+ PNTV+DHAS+AFN
Sbjct: 81  KSDGELEQWCIADEQTPDDELQRALDWACGKGGADCSKIQVNQPCYLPNTVRDHASYAFN 140

Query: 73  AYFQNFKHQGGSCFFKGAAIITELDPSHGSCQYEFIP 110
            YFQ FKH+GGSC+FKGAAIITELDPSHGSCQYEF P
Sbjct: 141 NYFQKFKHKGGSCYFKGAAIITELDPSHGSCQYEFHP 177

[Close]

BLAST of CmoCh02G002250 vs. NCBI nr
Match: gi|645247544|ref|XP_008229886.1| (PREDICTED: glucan endo-1,3-beta-glucosidase 4 [Prunus mume])

HSP 1 Score: 183.3 bits (464), Expect = 2.2e-43
Identity = 79/100 (79.00%), Postives = 88/100 (88.00%), Query Frame = 1


Query: 10  PHLKEGGEFEQWCIADEQTPDDELQMALDWACGRGGGNCSKIQPNQPCFNPNTVKDHASF 69
           PH K G EFEQWC+ADEQTPDDELQ A+DWACG GG +CSKIQ NQPC+ PNTVKDHAS+
Sbjct: 19  PH-KSGAEFEQWCVADEQTPDDELQAAMDWACGGGGADCSKIQVNQPCYFPNTVKDHASY 78

Query: 70  AFNAYFQNFKHQGGSCFFKGAAIITELDPSHGSCQYEFIP 110
           AFN+YFQ FKH+GGSC+FK AA+ITELDPSH SC YEFIP
Sbjct: 79  AFNSYFQKFKHKGGSCYFKAAALITELDPSHASCHYEFIP 117

The following BLAST results are available for this feature:

BLAST of CmoCh02G002250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
E1312_ARATH	3.9e-24	50.53	Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV...	[more]
E131_ARATH	8.7e-24	57.65	Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=...	[more]
E134_ARATH	5.7e-23	54.12	Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=...	[more]
E1313_ARATH	2.6e-20	46.67	Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV...	[more]
E133_ARATH	5.5e-18	44.83	Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=...	[more]

BLAST of CmoCh02G002250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDX6_CUCSA	2.6e-51	91.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G110840 PE=4 SV=1	[more]
B9IAQ9_POPTR	2.0e-43	81.44	Glycosyl hydrolase family protein OS=Populus trichocarpa GN=POPTR_0014s16250g PE...	[more]
M5XAQ0_PRUPE	7.6e-43	78.35	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025080mg PE=4 SV=1	[more]
A0A061DL58_THECC	1.7e-42	79.38	Glycosyl hydrolase 1 OS=Theobroma cacao GN=TCM_002325 PE=4 SV=1	[more]
A0A067K4D2_JATCU	6.5e-42	78.57	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18472 PE=4 SV=1	[more]

BLAST of CmoCh02G002250 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G35740.1	5.2e-43	77.66	Carbohydrate-binding X8 domain superfamily protein	[more]
AT2G04910.1	2.5e-29	63.86	Carbohydrate-binding X8 domain superfamily protein	[more]
AT4G29360.1	2.2e-25	50.53	O-Glycosyl hydrolases family 17 protein	[more]
AT1G11820.2	4.9e-25	57.65	O-Glycosyl hydrolases family 17 protein	[more]
AT3G13560.1	3.2e-24	54.12	O-Glycosyl hydrolases family 17 protein	[more]

BLAST of CmoCh02G002250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444496\|ref\|XP_004140010.1\|	3.8e-51	91.92	PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Cucumis sativus]	[more]
gi\|659128386\|ref\|XP_008464180.1\|	4.2e-50	89.90	PREDICTED: glucan endo-1,3-beta-glucosidase 12 isoform X1 [Cucumis melo]	[more]
gi\|659128388\|ref\|XP_008464181.1\|	1.2e-49	89.00	PREDICTED: glucan endo-1,3-beta-glucosidase 12 isoform X2 [Cucumis melo]	[more]
gi\|743910855\|ref\|XP_011048952.1\|	9.9e-44	82.47	PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Populus euphratica]	[more]
gi\|645247544\|ref\|XP_008229886.1\|	2.2e-43	79.00	PREDICTED: glucan endo-1,3-beta-glucosidase 4 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012946	X8

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0046658	anchored component of plasma membrane
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function	GO:0030247	polysaccharide binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G002250.1	CmoCh02G002250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012946	X8 domain	PFAM	PF07983	X8	coord: 20..91 score: 5.9
IPR012946	X8 domain	SMART	SM00768	X8_cls	coord: 20..105 score: 6.0
None	No IPR available	PANTHER	PTHR32227	FAMILY NOT NAMED	coord: 17..109 score: 7.7
None	No IPR available	PANTHER	PTHR32227:SF60	CARBOHYDRATE-BINDING X8 DOMAIN-CONTAINING PROTEIN	coord: 17..109 score: 7.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G002250	Cucsa.120380	Cucumber (Gy14) v1	cgycmoB0306
CmoCh02G002250	CmaCh02G002190	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G002250	Cla001408	Watermelon (97103) v1	cmowmB595
CmoCh02G002250	Csa6G110840	Cucumber (Chinese Long) v2	cmocuB611
CmoCh02G002250	MELO3C025984	Melon (DHL92) v3.5.1	cmomeB523
CmoCh02G002250	ClCG02G009390	Watermelon (Charleston Gray)	cmowcgB541
CmoCh02G002250	CSPI06G09040	Wild cucumber (PI 183967)	cmocpiB616
CmoCh02G002250	Lsi10G000560	Bottle gourd (USVL1VR-Ls)	cmolsiB534
CmoCh02G002250	Cp4.1LG05g13890	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G002250	MELO3C025984.2	Melon (DHL92) v3.6.1	cmomedB601
CmoCh02G002250	CsaV3_6G009430	Cucumber (Chinese Long) v3	cmocucB0730
CmoCh02G002250	Cla97C02G035740	Watermelon (97103) v2	cmowmbB604
CmoCh02G002250	Bhi10G001033	Wax gourd	cmowgoB0748
CmoCh02G002250	CsGy6G009190	Cucumber (Gy14) v2	cgybcmoB790
CmoCh02G002250	Carg05146	Silver-seed gourd	carcmoB1094

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G002250	Cucurbita pepo (Zucchini)	cmocpeB577
CmoCh02G002250	Cucumber (Gy14) v2	cgybcmoB376
CmoCh02G002250	Silver-seed gourd	carcmoB0474
CmoCh02G002250	Wax gourd	cmowgoB0757
CmoCh02G002250	Cucurbita moschata (Rifu)	cmocmoB406
CmoCh02G002250	Cucurbita maxima (Rimu)	cmacmoB524
CmoCh02G002250	Cucurbita maxima (Rimu)	cmacmoB556