CmoCh02G001940 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G001940
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPentatricopeptide repeat-containing family protein
LocationCmo_Chr02 : 915222 .. 916253 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACTTGGAACTGCAAGGACTTCTTCGTTTTTACTCCATTTCCATCAGTTTTTGCGGCAATGTTCTTCAGTCCCCTCAATAACTCCAGCACAATCGCTTCAAGAAAGCATTAGAGCTGCAGTTGAATCAAAGTCATATCAGAAACTTCCAGATTTGTTTCCTTCTTTACAAGAAGCTTGCCAAAACCCCAATCCTTTCTCGTTTCTCTCTACTTTTCCTGTTAACTTTAGAACACACGTTGTGGATGAGATATTGCAATCTTTAATCCCTCTCAGACCTCGCTCAAGGCCACAGTTTGTCCATGCCTCTCTGCTTTTCTATACTCTTCAAAGCCCTTCACCGCTTCCCCTCTCTCTTCCAGTTCTCCAGCGGATTCTCCACTCTGGTTGTGTTCCTGTCCCTCAGACCCACCTTCTCCTCTCTTCTGTATGGCTAAAACAACGTCGCCAGTCTAAGTCTGTTGCTAGCATCTTGTTGAACATGCGGTCGATTGGATATGAGCCTGATAGCAGCATATGTAATTATCTTATATCCTCTCTTTGTGCCATTGATGAGTTAGCTGAGGCATTTCAAGTCTTGAAGGGTATGGGGGGAGCAGGATGCGTCCCTGACTTGGAGAGTTATGGCACTTTAATTAGTTCATCAACAGCAGTTAGACGGACAGCTGAGGCAGTGGAACTGCTGAAAGAAATGGTTGTAAAAGTTAAGTTGACACCAAGACAAGGAACGGTCATTAACGTTGTGGCTGCATTACGAGCAAACCGAGAGATAAGGAGAGCAGTTGAGATCATTGAGCTGTTGGAGAAGGAGAGTTACAATGTTGGATTTGAGAGTTATGAGATTCTTGTTGAAGGTTGTCTGGAGTGTCGTGAGTATATTTTAGCAGGAAAGGTGGTCATGGGGATGACAGAGAAAGGGTATATACCATATATCAGGGTCAGACATAAGGTTGTCGAGGGGCTGGCTGGTATTGGAGAGACGGAACTGGCATCTGCTGTGAGACGCAGGTTTGCTGAGTTGAGGTCTTAG

mRNA sequence

ATGAAACTTGGAACTGCAAGGACTTCTTCGTTTTTACTCCATTTCCATCAGTTTTTGCGGCAATGTTCTTCAGTCCCCTCAATAACTCCAGCACAATCGCTTCAAGAAAGCATTAGAGCTGCAGTTGAATCAAAGTCATATCAGAAACTTCCAGATTTGTTTCCTTCTTTACAAGAAGCTTGCCAAAACCCCAATCCTTTCTCGTTTCTCTCTACTTTTCCTGTTAACTTTAGAACACACGTTGTGGATGAGATATTGCAATCTTTAATCCCTCTCAGACCTCGCTCAAGGCCACAGTTTGTCCATGCCTCTCTGCTTTTCTATACTCTTCAAAGCCCTTCACCGCTTCCCCTCTCTCTTCCAGTTCTCCAGCGGATTCTCCACTCTGGTTGTGTTCCTGTCCCTCAGACCCACCTTCTCCTCTCTTCTGTATGGCTAAAACAACGTCGCCAGTCTAAGTCTGTTGCTAGCATCTTGTTGAACATGCGGTCGATTGGATATGAGCCTGATAGCAGCATATGTAATTATCTTATATCCTCTCTTTGTGCCATTGATGAGTTAGCTGAGGCATTTCAAGTCTTGAAGGGTATGGGGGGAGCAGGATGCGTCCCTGACTTGGAGAGTTATGGCACTTTAATTAGTTCATCAACAGCAGTTAGACGGACAGCTGAGGCAGTGGAACTGCTGAAAGAAATGGTTGTAAAAGTTAAGTTGACACCAAGACAAGGAACGGTCATTAACGTTGTGGCTGCATTACGAGCAAACCGAGAGATAAGGAGAGCAGTTGAGATCATTGAGCTGTTGGAGAAGGAGAGTTACAATGTTGGATTTGAGAGTTATGAGATTCTTGTTGAAGGTTGTCTGGAGTGTCGTGAGTATATTTTAGCAGGAAAGGTGGTCATGGGGATGACAGAGAAAGGGTATATACCATATATCAGGGTCAGACATAAGGTTGTCGAGGGGCTGGCTGGTATTGGAGAGACGGAACTGGCATCTGCTGTGAGACGCAGGTTTGCTGAGTTGAGGTCTTAG

Coding sequence (CDS)

ATGAAACTTGGAACTGCAAGGACTTCTTCGTTTTTACTCCATTTCCATCAGTTTTTGCGGCAATGTTCTTCAGTCCCCTCAATAACTCCAGCACAATCGCTTCAAGAAAGCATTAGAGCTGCAGTTGAATCAAAGTCATATCAGAAACTTCCAGATTTGTTTCCTTCTTTACAAGAAGCTTGCCAAAACCCCAATCCTTTCTCGTTTCTCTCTACTTTTCCTGTTAACTTTAGAACACACGTTGTGGATGAGATATTGCAATCTTTAATCCCTCTCAGACCTCGCTCAAGGCCACAGTTTGTCCATGCCTCTCTGCTTTTCTATACTCTTCAAAGCCCTTCACCGCTTCCCCTCTCTCTTCCAGTTCTCCAGCGGATTCTCCACTCTGGTTGTGTTCCTGTCCCTCAGACCCACCTTCTCCTCTCTTCTGTATGGCTAAAACAACGTCGCCAGTCTAAGTCTGTTGCTAGCATCTTGTTGAACATGCGGTCGATTGGATATGAGCCTGATAGCAGCATATGTAATTATCTTATATCCTCTCTTTGTGCCATTGATGAGTTAGCTGAGGCATTTCAAGTCTTGAAGGGTATGGGGGGAGCAGGATGCGTCCCTGACTTGGAGAGTTATGGCACTTTAATTAGTTCATCAACAGCAGTTAGACGGACAGCTGAGGCAGTGGAACTGCTGAAAGAAATGGTTGTAAAAGTTAAGTTGACACCAAGACAAGGAACGGTCATTAACGTTGTGGCTGCATTACGAGCAAACCGAGAGATAAGGAGAGCAGTTGAGATCATTGAGCTGTTGGAGAAGGAGAGTTACAATGTTGGATTTGAGAGTTATGAGATTCTTGTTGAAGGTTGTCTGGAGTGTCGTGAGTATATTTTAGCAGGAAAGGTGGTCATGGGGATGACAGAGAAAGGGTATATACCATATATCAGGGTCAGACATAAGGTTGTCGAGGGGCTGGCTGGTATTGGAGAGACGGAACTGGCATCTGCTGTGAGACGCAGGTTTGCTGAGTTGAGGTCTTAG
Homology
[Close]
BLAST of CmoCh02G001940 vs. Swiss-Prot
Match: PPR16_ARATH (Pentatricopeptide repeat-containing protein At1g06270 OS=Arabidopsis thaliana GN=At1g06270 PE=2 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 2.9e-97
Identity = 181/317 (57.10%), Postives = 241/317 (76.03%), Query Frame = 1 

Query: 27  SITPAQSLQESIRAAVESKSYQKLPDLFPSLQEACQNPNPFSFLSTFPVNFRTHVVDEIL 86
           SI+  ++++++I+ AVE+K Y ++P+L  SL+E  QN   FSFLS F  + R  V+DEIL
Sbjct: 27  SISSFEAVEKAIKCAVETKEYLRIPELVVSLKEPYQNSTLFSFLSAFQRHHRIRVIDEIL 86

Query: 87  QSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSLPVLQRILHSGCVPVPQTHLLLSSVWL 146
           QS +P+RPRS P+ V++SLL Y LQS  PLPLS  +LQR L SGC+P PQTHLLLS  WL
Sbjct: 87  QSFVPVRPRSLPKIVYSSLLTYCLQSSDPLPLSFAILQRTLRSGCLPNPQTHLLLSDAWL 146

Query: 147 KQRRQSKSVASILLNMRSIGYEPDSSICNYLISSLCAIDELAEAFQVLKGMGGAGCVPDL 206
           ++RR S+SVA I+  M+ IGY PD+  CNYL+SSLCA+D+L EA +V++ M  AGC+PD+
Sbjct: 147 ERRRGSQSVADIINEMKLIGYSPDTGTCNYLVSSLCAVDKLDEAIKVVEEMSAAGCIPDV 206

Query: 207 ESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTPRQGTVINVVAALRANREIRRAVEIIE 266
           ESYG +I+S    R+T + V+++KEMV K  ++PR+G +  V AALRANREI +A+E+IE
Sbjct: 207 ESYGAVINSLCLARKTTDVVKIVKEMVSKAGISPRKGMLTKVAAALRANREIWKAIEMIE 266

Query: 267 LLEKESYNVGFESYEILVEGCLECREYILAGKVVMGMTEKGYIPYIRVRHKVVEGLAGIG 326
            +E   Y V FESYE++VEGCLE REYILAGKVVM MT++G+IPYI+VR KVVE L  IG
Sbjct: 267 FVESRDYPVEFESYEVVVEGCLEVREYILAGKVVMRMTDRGFIPYIKVRQKVVERLINIG 326

Query: 327 ETELASAVRRRFAELRS 344
           E +LA  VR+R +ELRS
Sbjct: 327 EWKLACTVRQRVSELRS 343

[Close]
BLAST of CmoCh02G001940 vs. Swiss-Prot
Match: PP281_ARATH (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.7e-10
Identity = 73/282 (25.89%), Postives = 122/282 (43.26%), Query Frame = 1 

Query: 57  LQEACQNPNPFSFLSTFPVNFRTHVVDEILQSLIPLRPRS-RPQFVHASLLFYTLQSPSP 116
           LQE   +P+ +++ S      +   V E ++ L  +  R   P  V  + L  TL   + 
Sbjct: 322 LQEG-YDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQ 381

Query: 117 LPLSLPVLQRILHSGCVP-VPQTHLLLSSVWLKQRRQSKSVASILLNMRSIGYEPDSSIC 176
           +  +  + + +   G +P V   + L+  + L   R  +    +   MRS G EPD    
Sbjct: 382 VEEATELARVLTSKGILPDVCTFNSLIQGLCLT--RNHRVAMELFEEMRSKGCEPDEFTY 441

Query: 177 NYLISSLCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVV 236
           N LI SLC+  +L EA  +LK M  +GC   + +Y TLI       +T EA E+  EM V
Sbjct: 442 NMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEV 501

Query: 237 KVKLTPRQGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYI 296
              ++    T   ++  L  +R +  A ++++ +  E       +Y  L+       +  
Sbjct: 502 H-GVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIK 561

Query: 297 LAGKVVMGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRR 337
            A  +V  MT  G  P I     ++ GL   G  E+AS + R
Sbjct: 562 KAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLR 599

[Close]
BLAST of CmoCh02G001940 vs. Swiss-Prot
Match: PPR36_ARATH (Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.9e-09
Identity = 60/249 (24.10%), Postives = 108/249 (43.37%), Query Frame = 1 

Query: 92  LRPRSRPQFVHASLLFYTLQSPSPLPLSLPVLQRILHSGCVPVPQTHLLLSSVWLKQRRQ 151
           ++ +  P  V  S+L  +      L  +  + + ++H G  P   T+  L   + K+   
Sbjct: 325 IKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHL 384

Query: 152 SKSVASILLNMRSIGYEPDSSICNYLISSLCAIDELAEAFQVLKGMGGAGCVPDLESYGT 211
            K+   + L M S G +P+    N LI+  C  + + +  ++ + M   G V D  +Y T
Sbjct: 385 DKANQMVDL-MVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNT 444

Query: 212 LISSSTAVRRTAEAVELLKEMVVKVKLTPRQGTVINVVAALRANREIRRAVEIIELLEKE 271
           LI     + +   A EL +EMV + K+ P   T   ++  L  N E  +A+EI E +EK 
Sbjct: 445 LIQGFCELGKLNVAKELFQEMVSR-KVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKS 504

Query: 272 SYNVGFESYEILVEGCLECREYILAGKVVMGMTEKGYIPYIRVRHKVVEGLAGIGETELA 331
              +    Y I++ G     +   A  +   +  KG  P ++  + ++ GL   G    A
Sbjct: 505 KMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEA 564

Query: 332 SAVRRRFAE 341
             + R+  E
Sbjct: 565 ELLFRKMEE 571

[Close]
BLAST of CmoCh02G001940 vs. Swiss-Prot
Match: PPR28_ARATH (Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-08
Identity = 55/232 (23.71%), Postives = 106/232 (45.69%), Query Frame = 1 

Query: 92  LRPRSRPQFVHASLLFYTLQSPSPLPLSLPVLQRILHSGCVPVPQTHLLLSSVWLKQRRQ 151
           LR    P  V  ++L   L     L  ++ +L+++   GC P   ++  L   + K+++ 
Sbjct: 336 LRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKM 395

Query: 152 SKSVASILLNMRSIGYEPDSSICNYLISSLCAIDELAEAFQVLKGMGGAGCVPDLESYGT 211
            +++   L  M S G  PD    N ++++LC   ++ +A ++L  +   GC P L +Y T
Sbjct: 396 DRAI-EYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNT 455

Query: 212 LISSSTAVRRTAEAVELLKEMVVKVKLTPRQGTVINVVAALRANREIRRAVEIIELLEKE 271
           +I       +T +A++LL EM  K  L P   T  ++V  L    ++  A++     E+ 
Sbjct: 456 VIDGLAKAGKTGKAIKLLDEMRAK-DLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM 515

Query: 272 SYNVGFESYEILVEGCLECREYILAGKVVMGMTEKGYIPYIRVRHKVVEGLA 324
                  ++  ++ G  + R+   A   ++ M  +G  P       ++EGLA
Sbjct: 516 GIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLA 565

[Close]
BLAST of CmoCh02G001940 vs. Swiss-Prot
Match: PPR92_ARATH (Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 2.5e-08
Identity = 52/175 (29.71%), Postives = 88/175 (50.29%), Query Frame = 1 

Query: 118 LSLPVLQRILHSGCVPVPQTHLLLSSVWLKQRRQSKSVASILLNMRSIGYEPDSSICNYL 177
           L+L +L ++L  G  P   T   L + + ++ R S +V S++  M  IGY+PD    N +
Sbjct: 138 LALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAV-SLVDKMVEIGYKPDIVAYNAI 197

Query: 178 ISSLCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVK 237
           I SLC    + +AF   K +   G  P++ +Y  L++      R ++A  LL +M +K K
Sbjct: 198 IDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM-IKKK 257

Query: 238 LTPRQGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEG-CLECR 292
           +TP   T   ++ A   N ++  A E+ E + + S +    +Y  L+ G CL  R
Sbjct: 258 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDR 310

[Close]
BLAST of CmoCh02G001940 vs. TrEMBL
Match: A0A0A0LFL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G013260 PE=4 SV=1)

HSP 1 Score: 540.8 bits (1392), Expect = 1.2e-150
Identity = 274/343 (79.88%), Postives = 312/343 (90.96%), Query Frame = 1 

Query: 1   MKLGTARTSSFLLHFHQFLRQCSSVPSITPAQSLQESIRAAVESKSYQKLPDLFPSLQEA 60
           M +G  +TS+FLL+FH FL Q SS+ SI+P+Q+LQ+SI+AAVESKSY+KLPDLFPSLQEA
Sbjct: 1   MNIGRTKTSAFLLNFHHFLGQYSSIHSISPSQTLQDSIKAAVESKSYKKLPDLFPSLQEA 60

Query: 61  CQNPNPFSFLSTFPVNFRTHVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120
           C NPN F FLSTFP+N RT VVDEILQSLI +RPRS+ QFVH SLLFYTLQSPSP PLSL
Sbjct: 61  CHNPNLFLFLSTFPLNLRTQVVDEILQSLISIRPRSKSQFVHGSLLFYTLQSPSPFPLSL 120

Query: 121 PVLQRILHSGCVPVPQTHLLLSSVWLKQRRQSKSVASILLNMRSIGYEPDSSICNYLISS 180
           PVLQRILHSGCVP PQTH LLSS WLKQR Q+KSVA+IL++M+SIGY+PDS+ICNYLISS
Sbjct: 121 PVLQRILHSGCVPSPQTHFLLSSAWLKQRSQAKSVANILMDMQSIGYKPDSNICNYLISS 180

Query: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240
           LC+I ELAEAFQVLKGMGGAGC+PDLESYGTLI ++TAVRRT +AVELLKEMVVKVKL P
Sbjct: 181 LCSIGELAEAFQVLKGMGGAGCIPDLESYGTLIHAATAVRRTDKAVELLKEMVVKVKLMP 240

Query: 241 RQGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVV 300
           RQGT+ NVVAALR NRE+RRAVEIIELLE++S++VGFESYE+LVEGCLECREYILAGKV 
Sbjct: 241 RQGTITNVVAALRTNREVRRAVEIIELLERDSHDVGFESYELLVEGCLECREYILAGKVT 300

Query: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 344
           MGMT++G+IPYI+VR +VVEGLAGIGE ELASAVRRRF EL S
Sbjct: 301 MGMTDRGFIPYIKVRQEVVEGLAGIGEVELASAVRRRFVELGS 343

[Close]
BLAST of CmoCh02G001940 vs. TrEMBL
Match: E0CTM4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02610 PE=4 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 2.4e-122
Identity = 228/343 (66.47%), Postives = 273/343 (79.59%), Query Frame = 1 

Query: 1   MKLGTARTSSFLLHFHQFLRQCSSVPSITPAQSLQESIRAAVESKSYQKLPDLFPSLQEA 60
           M +G  +    L HFH  LRQ SS+ SIT +Q+L+ESI+AAVESK+YQK+PDL  SL+E 
Sbjct: 1   MAIGATKLCRSLFHFHYSLRQISSIHSITSSQTLEESIKAAVESKTYQKIPDLLISLEET 60

Query: 61  CQNPNPFSFLSTFPVNFRTHVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120
           C NPNPFSFLSTF  N RT VVDEILQS IPLRPRSRPQ  +A LL +TLQS +PLPL+L
Sbjct: 61  CLNPNPFSFLSTFSQNLRTQVVDEILQSFIPLRPRSRPQIAYACLLSFTLQSANPLPLAL 120

Query: 121 PVLQRILHSGCVPVPQTHLLLSSVWLKQRRQSKSVASILLNMRSIGYEPDSSICNYLISS 180
            +LQR L SGC+PVPQTHLLLSS WL +RRQS SV++IL  M+SIGY PD   CNYLI S
Sbjct: 121 AILQRTLRSGCIPVPQTHLLLSSAWLSRRRQSHSVSNILSEMQSIGYYPDCGTCNYLILS 180

Query: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240
           LCAID+L EA  VLK MG  GC+PDLE YG++I +  A+RRT +A EL+KEMV K+ LTP
Sbjct: 181 LCAIDQLVEAVIVLKSMGQVGCIPDLEGYGSVIGAMCAMRRTTDATELMKEMVAKIGLTP 240

Query: 241 RQGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVV 300
           RQGTV+N+VAALRA +EI +AVE+IE LE E +N GF SYE ++EGCL C E++LAGKVV
Sbjct: 241 RQGTVLNLVAALRAKKEIWKAVEMIEFLEGEDFNAGFASYESVLEGCLACHEFVLAGKVV 300

Query: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 344
           MGMT +G+IPYI VR KVVEGLA +GE +LA AVR+RFA+LRS
Sbjct: 301 MGMTARGFIPYIGVRQKVVEGLANLGEWKLALAVRQRFADLRS 343

[Close]
BLAST of CmoCh02G001940 vs. TrEMBL
Match: A0A067DSI9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046547mg PE=4 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 2.4e-114
Identity = 212/343 (61.81%), Postives = 271/343 (79.01%), Query Frame = 1 

Query: 1   MKLGTARTSSFLLHFHQFLRQCSSVPSITPAQSLQESIRAAVESKSYQKLPDLFPSLQEA 60
           M +G  ++   L++F   L Q SS+ S++  ++L+E++RAAV++K YQ++P+L  S +EA
Sbjct: 1   MMIGAIKSCRSLVNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEA 60

Query: 61  CQNPNPFSFLSTFPVNFRTHVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120
           CQNPNPFSFLS FP N R  V+DE+L+S IPLRPRSRP+  +  LL YTLQS  PLPL+L
Sbjct: 61  CQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLAL 120

Query: 121 PVLQRILHSGCVPVPQTHLLLSSVWLKQRRQSKSVASILLNMRSIGYEPDSSICNYLISS 180
            +LQR L SGCVPVPQ  LLLSS WL++R QS+SVA ILL M+SIGY PD   CNYL+SS
Sbjct: 121 AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180

Query: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240
           LCAID+L EA +VLKGM  A CVPDLESY  +I + +  R+T +AVE++KEMV+ + L P
Sbjct: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240

Query: 241 RQGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVV 300
           RQG VI V AALRANRE+ +AVE+IE LE++   +GF+ YE++VEGCLECREYILAGK V
Sbjct: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300

Query: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 344
           MGMTE+G+IPYI+VR KVVEGLAG+GE +LA+ VR+RFAEL+S
Sbjct: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343

[Close]
BLAST of CmoCh02G001940 vs. TrEMBL
Match: V4UCI9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017507mg PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 1.2e-113
Identity = 210/343 (61.22%), Postives = 270/343 (78.72%), Query Frame = 1 

Query: 1   MKLGTARTSSFLLHFHQFLRQCSSVPSITPAQSLQESIRAAVESKSYQKLPDLFPSLQEA 60
           M +G  ++   L++F   L Q SS+ S++  ++L+E++RAAV++K YQ++P+L  S +EA
Sbjct: 1   MMIGAIKSCRSLVNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEA 60

Query: 61  CQNPNPFSFLSTFPVNFRTHVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120
           CQNPNPFSFLS FP N R  V+DE+L+S IPLRPRSRP+  +  LL YTLQS  PLPL+L
Sbjct: 61  CQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLAL 120

Query: 121 PVLQRILHSGCVPVPQTHLLLSSVWLKQRRQSKSVASILLNMRSIGYEPDSSICNYLISS 180
            +LQR L SGCVPVPQ  LLLSS WL++R QS+SVA ILL M+SIGY PD   CNYL+SS
Sbjct: 121 AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180

Query: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240
           LCAID+L EA +VLKGM    C+PDLESY  +I + +  R+T +AVE++KEMV+ + L P
Sbjct: 181 LCAIDQLVEAAKVLKGMSNVECIPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240

Query: 241 RQGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVV 300
           RQG VI V AALRANRE+ +AVE+I+ LE++   +GF+ YE++VEGCLECREYILAGK V
Sbjct: 241 RQGMVIKVAAALRANREMWKAVEMIKFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300

Query: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 344
           MGMTE+G+IPYI+VR KVVEGLAG+GE +LAS VR+RFAEL+S
Sbjct: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLASVVRQRFAELKS 343

[Close]
BLAST of CmoCh02G001940 vs. TrEMBL
Match: M5WQ10_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021626mg PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 2.0e-113
Identity = 218/343 (63.56%), Postives = 264/343 (76.97%), Query Frame = 1 

Query: 1   MKLGTARTSSFLLHFHQFLRQCSSVPSITPAQSLQESIRAAVESKSYQKLPDLFPSLQEA 60
           M +  A+     L  H  L Q  S+ SI+ +Q LQE+I+ AVE+K+YQK+PDL  S  +A
Sbjct: 1   MAIRAAKFCRSFLPLHCRLLQYCSIYSISSSQMLQETIKNAVEAKTYQKIPDLLKSSAQA 60

Query: 61  CQNPNPFSFLSTFPVNFRTHVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120
           CQNPNPFSFLS+FP N RT VVDEILQS IPLRPRSR Q  ++ LL +TLQ  +P PL+L
Sbjct: 61  CQNPNPFSFLSSFPHNLRTQVVDEILQSFIPLRPRSRGQIAYSYLLSFTLQCSNPFPLAL 120

Query: 121 PVLQRILHSGCVPVPQTHLLLSSVWLKQRRQSKSVASILLNMRSIGYEPDSSICNYLISS 180
            +LQR L SGC+PVPQT LLLSS WL  R +S SV+ ILL M+SIGY PD   CNYLISS
Sbjct: 121 AILQRTLRSGCIPVPQTLLLLSSAWLNCRNESHSVSKILLEMQSIGYHPDCGTCNYLISS 180

Query: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240
           LC++D+L EA +VLK M  AGCVPDLES+ T+I +   VRRTAEA++++K+MV KV LTP
Sbjct: 181 LCSVDQLNEAVKVLKEMSRAGCVPDLESFDTVIGAMCTVRRTAEAIDMIKQMVEKVGLTP 240

Query: 241 RQGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVV 300
           RQGT+  V AALRANR I RAVE+IE LE++ Y VGFESYE++V GCL+C EYILAGKVV
Sbjct: 241 RQGTIAKVAAALRANRNIWRAVEMIEFLERDGYPVGFESYELVVNGCLDCGEYILAGKVV 300

Query: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 344
           MGMTE+G+IPYIR R KVVE LAG GE +LA +VR+RF ELRS
Sbjct: 301 MGMTERGFIPYIRTRQKVVERLAGAGEWKLACSVRQRFGELRS 343

[Close]
BLAST of CmoCh02G001940 vs. TAIR10
Match: AT1G06270.1 (AT1G06270.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 356.7 bits (914), Expect = 1.6e-98
Identity = 181/317 (57.10%), Postives = 241/317 (76.03%), Query Frame = 1 

Query: 27  SITPAQSLQESIRAAVESKSYQKLPDLFPSLQEACQNPNPFSFLSTFPVNFRTHVVDEIL 86
           SI+  ++++++I+ AVE+K Y ++P+L  SL+E  QN   FSFLS F  + R  V+DEIL
Sbjct: 27  SISSFEAVEKAIKCAVETKEYLRIPELVVSLKEPYQNSTLFSFLSAFQRHHRIRVIDEIL 86

Query: 87  QSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSLPVLQRILHSGCVPVPQTHLLLSSVWL 146
           QS +P+RPRS P+ V++SLL Y LQS  PLPLS  +LQR L SGC+P PQTHLLLS  WL
Sbjct: 87  QSFVPVRPRSLPKIVYSSLLTYCLQSSDPLPLSFAILQRTLRSGCLPNPQTHLLLSDAWL 146

Query: 147 KQRRQSKSVASILLNMRSIGYEPDSSICNYLISSLCAIDELAEAFQVLKGMGGAGCVPDL 206
           ++RR S+SVA I+  M+ IGY PD+  CNYL+SSLCA+D+L EA +V++ M  AGC+PD+
Sbjct: 147 ERRRGSQSVADIINEMKLIGYSPDTGTCNYLVSSLCAVDKLDEAIKVVEEMSAAGCIPDV 206

Query: 207 ESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTPRQGTVINVVAALRANREIRRAVEIIE 266
           ESYG +I+S    R+T + V+++KEMV K  ++PR+G +  V AALRANREI +A+E+IE
Sbjct: 207 ESYGAVINSLCLARKTTDVVKIVKEMVSKAGISPRKGMLTKVAAALRANREIWKAIEMIE 266

Query: 267 LLEKESYNVGFESYEILVEGCLECREYILAGKVVMGMTEKGYIPYIRVRHKVVEGLAGIG 326
            +E   Y V FESYE++VEGCLE REYILAGKVVM MT++G+IPYI+VR KVVE L  IG
Sbjct: 267 FVESRDYPVEFESYEVVVEGCLEVREYILAGKVVMRMTDRGFIPYIKVRQKVVERLINIG 326

Query: 327 ETELASAVRRRFAELRS 344
           E +LA  VR+R +ELRS
Sbjct: 327 EWKLACTVRQRVSELRS 343

[Close]
BLAST of CmoCh02G001940 vs. TAIR10
Match: AT3G53700.1 (AT3G53700.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-11
Identity = 73/282 (25.89%), Postives = 122/282 (43.26%), Query Frame = 1 

Query: 57  LQEACQNPNPFSFLSTFPVNFRTHVVDEILQSLIPLRPRS-RPQFVHASLLFYTLQSPSP 116
           LQE   +P+ +++ S      +   V E ++ L  +  R   P  V  + L  TL   + 
Sbjct: 322 LQEG-YDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQ 381

Query: 117 LPLSLPVLQRILHSGCVP-VPQTHLLLSSVWLKQRRQSKSVASILLNMRSIGYEPDSSIC 176
           +  +  + + +   G +P V   + L+  + L   R  +    +   MRS G EPD    
Sbjct: 382 VEEATELARVLTSKGILPDVCTFNSLIQGLCLT--RNHRVAMELFEEMRSKGCEPDEFTY 441

Query: 177 NYLISSLCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVV 236
           N LI SLC+  +L EA  +LK M  +GC   + +Y TLI       +T EA E+  EM V
Sbjct: 442 NMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEV 501

Query: 237 KVKLTPRQGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYI 296
              ++    T   ++  L  +R +  A ++++ +  E       +Y  L+       +  
Sbjct: 502 H-GVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIK 561

Query: 297 LAGKVVMGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRR 337
            A  +V  MT  G  P I     ++ GL   G  E+AS + R
Sbjct: 562 KAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLR 599

[Close]
BLAST of CmoCh02G001940 vs. TAIR10
Match: AT1G12300.1 (AT1G12300.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-10
Identity = 60/249 (24.10%), Postives = 108/249 (43.37%), Query Frame = 1 

Query: 92  LRPRSRPQFVHASLLFYTLQSPSPLPLSLPVLQRILHSGCVPVPQTHLLLSSVWLKQRRQ 151
           ++ +  P  V  S+L  +      L  +  + + ++H G  P   T+  L   + K+   
Sbjct: 325 IKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHL 384

Query: 152 SKSVASILLNMRSIGYEPDSSICNYLISSLCAIDELAEAFQVLKGMGGAGCVPDLESYGT 211
            K+   + L M S G +P+    N LI+  C  + + +  ++ + M   G V D  +Y T
Sbjct: 385 DKANQMVDL-MVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNT 444

Query: 212 LISSSTAVRRTAEAVELLKEMVVKVKLTPRQGTVINVVAALRANREIRRAVEIIELLEKE 271
           LI     + +   A EL +EMV + K+ P   T   ++  L  N E  +A+EI E +EK 
Sbjct: 445 LIQGFCELGKLNVAKELFQEMVSR-KVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKS 504

Query: 272 SYNVGFESYEILVEGCLECREYILAGKVVMGMTEKGYIPYIRVRHKVVEGLAGIGETELA 331
              +    Y I++ G     +   A  +   +  KG  P ++  + ++ GL   G    A
Sbjct: 505 KMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEA 564

Query: 332 SAVRRRFAE 341
             + R+  E
Sbjct: 565 ELLFRKMEE 571

[Close]
BLAST of CmoCh02G001940 vs. TAIR10
Match: AT1G09900.1 (AT1G09900.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 62.4 bits (150), Expect = 6.3e-10
Identity = 55/232 (23.71%), Postives = 106/232 (45.69%), Query Frame = 1 

Query: 92  LRPRSRPQFVHASLLFYTLQSPSPLPLSLPVLQRILHSGCVPVPQTHLLLSSVWLKQRRQ 151
           LR    P  V  ++L   L     L  ++ +L+++   GC P   ++  L   + K+++ 
Sbjct: 336 LRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKM 395

Query: 152 SKSVASILLNMRSIGYEPDSSICNYLISSLCAIDELAEAFQVLKGMGGAGCVPDLESYGT 211
            +++   L  M S G  PD    N ++++LC   ++ +A ++L  +   GC P L +Y T
Sbjct: 396 DRAI-EYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNT 455

Query: 212 LISSSTAVRRTAEAVELLKEMVVKVKLTPRQGTVINVVAALRANREIRRAVEIIELLEKE 271
           +I       +T +A++LL EM  K  L P   T  ++V  L    ++  A++     E+ 
Sbjct: 456 VIDGLAKAGKTGKAIKLLDEMRAK-DLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM 515

Query: 272 SYNVGFESYEILVEGCLECREYILAGKVVMGMTEKGYIPYIRVRHKVVEGLA 324
                  ++  ++ G  + R+   A   ++ M  +G  P       ++EGLA
Sbjct: 516 GIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLA 565

[Close]
BLAST of CmoCh02G001940 vs. TAIR10
Match: AT1G62680.1 (AT1G62680.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-09
Identity = 52/175 (29.71%), Postives = 88/175 (50.29%), Query Frame = 1 

Query: 118 LSLPVLQRILHSGCVPVPQTHLLLSSVWLKQRRQSKSVASILLNMRSIGYEPDSSICNYL 177
           L+L +L ++L  G  P   T   L + + ++ R S +V S++  M  IGY+PD    N +
Sbjct: 138 LALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAV-SLVDKMVEIGYKPDIVAYNAI 197

Query: 178 ISSLCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVK 237
           I SLC    + +AF   K +   G  P++ +Y  L++      R ++A  LL +M +K K
Sbjct: 198 IDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM-IKKK 257

Query: 238 LTPRQGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEG-CLECR 292
           +TP   T   ++ A   N ++  A E+ E + + S +    +Y  L+ G CL  R
Sbjct: 258 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDR 310

[Close]
BLAST of CmoCh02G001940 vs. NCBI nr
Match: gi|449443213|ref|XP_004139374.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g06270 [Cucumis sativus])

HSP 1 Score: 540.8 bits (1392), Expect = 1.7e-150
Identity = 274/343 (79.88%), Postives = 312/343 (90.96%), Query Frame = 1 

Query: 1   MKLGTARTSSFLLHFHQFLRQCSSVPSITPAQSLQESIRAAVESKSYQKLPDLFPSLQEA 60
           M +G  +TS+FLL+FH FL Q SS+ SI+P+Q+LQ+SI+AAVESKSY+KLPDLFPSLQEA
Sbjct: 1   MNIGRTKTSAFLLNFHHFLGQYSSIHSISPSQTLQDSIKAAVESKSYKKLPDLFPSLQEA 60

Query: 61  CQNPNPFSFLSTFPVNFRTHVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120
           C NPN F FLSTFP+N RT VVDEILQSLI +RPRS+ QFVH SLLFYTLQSPSP PLSL
Sbjct: 61  CHNPNLFLFLSTFPLNLRTQVVDEILQSLISIRPRSKSQFVHGSLLFYTLQSPSPFPLSL 120

Query: 121 PVLQRILHSGCVPVPQTHLLLSSVWLKQRRQSKSVASILLNMRSIGYEPDSSICNYLISS 180
           PVLQRILHSGCVP PQTH LLSS WLKQR Q+KSVA+IL++M+SIGY+PDS+ICNYLISS
Sbjct: 121 PVLQRILHSGCVPSPQTHFLLSSAWLKQRSQAKSVANILMDMQSIGYKPDSNICNYLISS 180

Query: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240
           LC+I ELAEAFQVLKGMGGAGC+PDLESYGTLI ++TAVRRT +AVELLKEMVVKVKL P
Sbjct: 181 LCSIGELAEAFQVLKGMGGAGCIPDLESYGTLIHAATAVRRTDKAVELLKEMVVKVKLMP 240

Query: 241 RQGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVV 300
           RQGT+ NVVAALR NRE+RRAVEIIELLE++S++VGFESYE+LVEGCLECREYILAGKV 
Sbjct: 241 RQGTITNVVAALRTNREVRRAVEIIELLERDSHDVGFESYELLVEGCLECREYILAGKVT 300

Query: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 344
           MGMT++G+IPYI+VR +VVEGLAGIGE ELASAVRRRF EL S
Sbjct: 301 MGMTDRGFIPYIKVRQEVVEGLAGIGEVELASAVRRRFVELGS 343

[Close]
BLAST of CmoCh02G001940 vs. NCBI nr
Match: gi|659070534|ref|XP_008455557.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g06270 [Cucumis melo])

HSP 1 Score: 538.1 bits (1385), Expect = 1.1e-149
Identity = 274/343 (79.88%), Postives = 311/343 (90.67%), Query Frame = 1 

Query: 1   MKLGTARTSSFLLHFHQFLRQCSSVPSITPAQSLQESIRAAVESKSYQKLPDLFPSLQEA 60
           M +G  +TS+FLL+FH FL QCSS+ SI+P+Q+LQ+SI+AAVESKSY+KLP LFPSLQEA
Sbjct: 1   MNIGRTKTSAFLLNFHHFLEQCSSIHSISPSQTLQDSIKAAVESKSYKKLPGLFPSLQEA 60

Query: 61  CQNPNPFSFLSTFPVNFRTHVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120
           C NPN F FLSTFP+N RT VVDEILQSLI +RPRS+ QFVH SLLFYTLQSPSP PLSL
Sbjct: 61  CHNPNLFLFLSTFPLNLRTQVVDEILQSLIFVRPRSKSQFVHGSLLFYTLQSPSPFPLSL 120

Query: 121 PVLQRILHSGCVPVPQTHLLLSSVWLKQRRQSKSVASILLNMRSIGYEPDSSICNYLISS 180
           PVLQRILHSGCVP PQTH LLSS WLKQR  +KSVA+IL++M+SIGY+PDS+ICNYLISS
Sbjct: 121 PVLQRILHSGCVPSPQTHFLLSSAWLKQRSHAKSVANILMDMQSIGYKPDSNICNYLISS 180

Query: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240
           LC+I ELAEAFQVLKGMGGAGCVPDLESYGTLI ++TAVRRT +AVELLKEMVVKVKL P
Sbjct: 181 LCSIGELAEAFQVLKGMGGAGCVPDLESYGTLIRAATAVRRTDKAVELLKEMVVKVKLMP 240

Query: 241 RQGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVV 300
           RQ T+INVVAALRANRE+RRAVEIIELLE++S++VGFESYE+LVEGCLECREYILAGKV+
Sbjct: 241 RQRTIINVVAALRANREVRRAVEIIELLERDSHDVGFESYELLVEGCLECREYILAGKVI 300

Query: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 344
           M MT++G+IPYI+VR KVVEGL GIGE ELASAVRRRF EL S
Sbjct: 301 MAMTDRGFIPYIKVRQKVVEGLYGIGELELASAVRRRFVELGS 343

[Close]
BLAST of CmoCh02G001940 vs. NCBI nr
Match: gi|225446521|ref|XP_002278909.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g06270 [Vitis vinifera])

HSP 1 Score: 446.8 bits (1148), Expect = 3.4e-122
Identity = 228/343 (66.47%), Postives = 273/343 (79.59%), Query Frame = 1 

Query: 1   MKLGTARTSSFLLHFHQFLRQCSSVPSITPAQSLQESIRAAVESKSYQKLPDLFPSLQEA 60
           M +G  +    L HFH  LRQ SS+ SIT +Q+L+ESI+AAVESK+YQK+PDL  SL+E 
Sbjct: 1   MAIGATKLCRSLFHFHYSLRQISSIHSITSSQTLEESIKAAVESKTYQKIPDLLISLEET 60

Query: 61  CQNPNPFSFLSTFPVNFRTHVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120
           C NPNPFSFLSTF  N RT VVDEILQS IPLRPRSRPQ  +A LL +TLQS +PLPL+L
Sbjct: 61  CLNPNPFSFLSTFSQNLRTQVVDEILQSFIPLRPRSRPQIAYACLLSFTLQSANPLPLAL 120

Query: 121 PVLQRILHSGCVPVPQTHLLLSSVWLKQRRQSKSVASILLNMRSIGYEPDSSICNYLISS 180
            +LQR L SGC+PVPQTHLLLSS WL +RRQS SV++IL  M+SIGY PD   CNYLI S
Sbjct: 121 AILQRTLRSGCIPVPQTHLLLSSAWLSRRRQSHSVSNILSEMQSIGYYPDCGTCNYLILS 180

Query: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240
           LCAID+L EA  VLK MG  GC+PDLE YG++I +  A+RRT +A EL+KEMV K+ LTP
Sbjct: 181 LCAIDQLVEAVIVLKSMGQVGCIPDLEGYGSVIGAMCAMRRTTDATELMKEMVAKIGLTP 240

Query: 241 RQGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVV 300
           RQGTV+N+VAALRA +EI +AVE+IE LE E +N GF SYE ++EGCL C E++LAGKVV
Sbjct: 241 RQGTVLNLVAALRAKKEIWKAVEMIEFLEGEDFNAGFASYESVLEGCLACHEFVLAGKVV 300

Query: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 344
           MGMT +G+IPYI VR KVVEGLA +GE +LA AVR+RFA+LRS
Sbjct: 301 MGMTARGFIPYIGVRQKVVEGLANLGEWKLALAVRQRFADLRS 343

[Close]
BLAST of CmoCh02G001940 vs. NCBI nr
Match: gi|568829486|ref|XP_006469053.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g06270 [Citrus sinensis])

HSP 1 Score: 420.2 bits (1079), Expect = 3.4e-114
Identity = 212/343 (61.81%), Postives = 271/343 (79.01%), Query Frame = 1 

Query: 1   MKLGTARTSSFLLHFHQFLRQCSSVPSITPAQSLQESIRAAVESKSYQKLPDLFPSLQEA 60
           M +G  ++   L++F   L Q SS+ S++  ++L+E++RAAV++K YQ++P+L  S +EA
Sbjct: 1   MMIGAIKSCRSLVNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEA 60

Query: 61  CQNPNPFSFLSTFPVNFRTHVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120
           CQNPNPFSFLS FP N R  V+DE+L+S IPLRPRSRP+  +  LL YTLQS  PLPL+L
Sbjct: 61  CQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLAL 120

Query: 121 PVLQRILHSGCVPVPQTHLLLSSVWLKQRRQSKSVASILLNMRSIGYEPDSSICNYLISS 180
            +LQR L SGCVPVPQ  LLLSS WL++R QS+SVA ILL M+SIGY PD   CNYL+SS
Sbjct: 121 AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180

Query: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240
           LCAID+L EA +VLKGM  A CVPDLESY  +I + +  R+T +AVE++KEMV+ + L P
Sbjct: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240

Query: 241 RQGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVV 300
           RQG VI V AALRANRE+ +AVE+IE LE++   +GF+ YE++VEGCLECREYILAGK V
Sbjct: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300

Query: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 344
           MGMTE+G+IPYI+VR KVVEGLAG+GE +LA+ VR+RFAEL+S
Sbjct: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343

[Close]
BLAST of CmoCh02G001940 vs. NCBI nr
Match: gi|567908855|ref|XP_006446741.1| (hypothetical protein CICLE_v10017507mg [Citrus clementina])

HSP 1 Score: 417.9 bits (1073), Expect = 1.7e-113
Identity = 210/343 (61.22%), Postives = 270/343 (78.72%), Query Frame = 1 

Query: 1   MKLGTARTSSFLLHFHQFLRQCSSVPSITPAQSLQESIRAAVESKSYQKLPDLFPSLQEA 60
           M +G  ++   L++F   L Q SS+ S++  ++L+E++RAAV++K YQ++P+L  S +EA
Sbjct: 1   MMIGAIKSCRSLVNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEA 60

Query: 61  CQNPNPFSFLSTFPVNFRTHVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120
           CQNPNPFSFLS FP N R  V+DE+L+S IPLRPRSRP+  +  LL YTLQS  PLPL+L
Sbjct: 61  CQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLAL 120

Query: 121 PVLQRILHSGCVPVPQTHLLLSSVWLKQRRQSKSVASILLNMRSIGYEPDSSICNYLISS 180
            +LQR L SGCVPVPQ  LLLSS WL++R QS+SVA ILL M+SIGY PD   CNYL+SS
Sbjct: 121 AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180

Query: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240
           LCAID+L EA +VLKGM    C+PDLESY  +I + +  R+T +AVE++KEMV+ + L P
Sbjct: 181 LCAIDQLVEAAKVLKGMSNVECIPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240

Query: 241 RQGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVV 300
           RQG VI V AALRANRE+ +AVE+I+ LE++   +GF+ YE++VEGCLECREYILAGK V
Sbjct: 241 RQGMVIKVAAALRANREMWKAVEMIKFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300

Query: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 344
           MGMTE+G+IPYI+VR KVVEGLAG+GE +LAS VR+RFAEL+S
Sbjct: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLASVVRQRFAELKS 343

The following BLAST results are available for this feature:
BLAST of CmoCh02G001940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPR16_ARATH2.9e-9757.10Pentatricopeptide repeat-containing protein At1g06270 OS=Arabidopsis thaliana GN... [more]
PP281_ARATH2.7e-1025.89Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidop... [more]
PPR36_ARATH3.9e-0924.10Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidop... [more]
PPR28_ARATH1.1e-0823.71Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN... [more]
PPR92_ARATH2.5e-0829.71Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidop... [more]
BLAST of CmoCh02G001940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFL3_CUCSA1.2e-15079.88Uncharacterized protein OS=Cucumis sativus GN=Csa_2G013260 PE=4 SV=1[more]
E0CTM4_VITVI2.4e-12266.47Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02610 PE=4 SV=... [more]
A0A067DSI9_CITSI2.4e-11461.81Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046547mg PE=4 SV=1[more]
V4UCI9_9ROSI1.2e-11361.22Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017507mg PE=4 SV=1[more]
M5WQ10_PRUPE2.0e-11363.56Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021626mg PE=4 SV=1[more]
BLAST of CmoCh02G001940 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G06270.11.6e-9857.10 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G53700.11.5e-1125.89 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G12300.12.2e-1024.10 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G09900.16.3e-1023.71 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT1G62680.11.4e-0929.71 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of CmoCh02G001940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443213|ref|XP_004139374.1|1.7e-15079.88PREDICTED: pentatricopeptide repeat-containing protein At1g06270 [Cucumis sativu... [more]
gi|659070534|ref|XP_008455557.1|1.1e-14979.88PREDICTED: pentatricopeptide repeat-containing protein At1g06270 [Cucumis melo][more]
gi|225446521|ref|XP_002278909.1|3.4e-12266.47PREDICTED: pentatricopeptide repeat-containing protein At1g06270 [Vitis vinifera... [more]
gi|568829486|ref|XP_006469053.1|3.4e-11461.81PREDICTED: pentatricopeptide repeat-containing protein At1g06270 [Citrus sinensi... [more]
gi|567908855|ref|XP_006446741.1|1.7e-11361.22hypothetical protein CICLE_v10017507mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0042170 plastid membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G001940.1CmoCh02G001940.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 208..233
score: 0.078coord: 173..202
score:
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 173..205
score: 3.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 276..310
score: 7.333coord: 205..235
score: 7.629coord: 170..204
score:
NoneNo IPR availableunknownCoilCoilcoord: 251..271
scor
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 62..331
score: 3.6E-36coord: 7..33
score: 3.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G001940CmaCh02G001880Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G001940Lsi10G000940Bottle gourd (USVL1VR-Ls)cmolsiB534
CmoCh02G001940Cp4.1LG05g14320Cucurbita pepo (Zucchini)cmocpeB595
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G001940Wild cucumber (PI 183967)cmocpiB583
CmoCh02G001940Cucumber (Chinese Long) v2cmocuB578
CmoCh02G001940Cucumber (Chinese Long) v2cmocuB632
CmoCh02G001940Melon (DHL92) v3.5.1cmomeB523
CmoCh02G001940Watermelon (Charleston Gray)cmowcgB529
CmoCh02G001940Watermelon (Charleston Gray)cmowcgB534
CmoCh02G001940Cucurbita pepo (Zucchini)cmocpeB577
CmoCh02G001940Cucumber (Gy14) v2cgybcmoB221
CmoCh02G001940Melon (DHL92) v3.6.1cmomedB601
CmoCh02G001940Silver-seed gourdcarcmoB0468
CmoCh02G001940Cucumber (Chinese Long) v3cmocucB0688
CmoCh02G001940Watermelon (97103) v2cmowmbB596
CmoCh02G001940Watermelon (97103) v2cmowmbB604
CmoCh02G001940Wax gourdcmowgoB0748
CmoCh02G001940Wax gourdcmowgoB0757
CmoCh02G001940Cucurbita moschata (Rifu)cmocmoB121
CmoCh02G001940Cucurbita moschata (Rifu)cmocmoB406
CmoCh02G001940Cucumber (Gy14) v1cgycmoB0851
CmoCh02G001940Cucurbita maxima (Rimu)cmacmoB154
CmoCh02G001940Cucurbita maxima (Rimu)cmacmoB524
CmoCh02G001940Cucurbita maxima (Rimu)cmacmoB561