CmaCh02G001880 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh02G001880
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPentatricopeptide repeat-containing family protein
LocationCma_Chr02 : 860578 .. 861609 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACTTGGAACTGCAAGGACTTCTTCGTTTTTACTCCATTTCCATCAGTTTTTGCGGCCATGTTCTTCAGTCCCCTCAATAACTCCAGCACAAACGCTTCAAGAAAGCATTAAAGCTGCAGTTGAGTCAAAGTCGTATAAAAAACTTCCAGATTTGTTTCCTTCTTTACAAGAAGCTTGCCAAAACCCCAATCCTTTCTCGTTTCTCTCTACTTTTCCTGTCAACTTCAGAACACAAGTTGTGGATGAGATACTGCAGTCTTTAATCCCTCTCAGACCTCGCTCAAGGCCACAGTTTGTCCATGCCTCTCTGCTTTTCTATACTCTTCAAAGCCCTTCACCCCTTCCCCTCTCTCTTCCAGTTCTCCAGCGGATTCTCCACTCTGGTTGTTTTCCTGTCCCTCAGACCCACCTTCTCCTCTCTTCTGCATGGCTAAAACAACGTCGTCAGTCTAAGTCTGTTGCTAGCATCTTGTTGGACATGCGGTCAATTGGATATGAGCCTGATAGCAGCATATGTAATTATCTTATATCCTCTCTTTGTGCCATTGATGAGTTAGCTGAGGCATTTCAAGTCTTGAAGGGTATGGGGGGAGCAGGATGCGTCCCTGACTTGGAGAGTTATGGCACTTTAATTAGTTCATCAACAGCAGTTAGACGGACAGCTGAGGCAGTGGAACTGCTGAAAGAAATGGTTGTAAAAGTTAAGTTGACACCAAGACGAGGAACGGTCATTAACGTTGTGGCTGCATTACGAGCAAACCGAGAGATAAGGAGAGCAGTTGAGATCATTGAGCTGTTGGAGAAGGAGAGTTACAATGTTGGATTTGAGAGTTATGAGATTCTTGTTGAAGGTTGTCTGGAGTGTCGTGAGTATATTTTAGCAGGAAAGGTGGTCATGGGGATGACAGAGAAAGGGTATATACCATATATCAGGGTCAGGCATAAGGTTGTTGAGGGGCTGGCTGGTATTGGAGAGACGGAACTGGCATCTGCTGTGAGACGCAGGTTTGCTGAGTTGAGGTCTTAG

mRNA sequence

ATGAAACTTGGAACTGCAAGGACTTCTTCGTTTTTACTCCATTTCCATCAGTTTTTGCGGCCATGTTCTTCAGTCCCCTCAATAACTCCAGCACAAACGCTTCAAGAAAGCATTAAAGCTGCAGTTGAGTCAAAGTCGTATAAAAAACTTCCAGATTTGTTTCCTTCTTTACAAGAAGCTTGCCAAAACCCCAATCCTTTCTCGTTTCTCTCTACTTTTCCTGTCAACTTCAGAACACAAGTTGTGGATGAGATACTGCAGTCTTTAATCCCTCTCAGACCTCGCTCAAGGCCACAGTTTGTCCATGCCTCTCTGCTTTTCTATACTCTTCAAAGCCCTTCACCCCTTCCCCTCTCTCTTCCAGTTCTCCAGCGGATTCTCCACTCTGGTTGTTTTCCTGTCCCTCAGACCCACCTTCTCCTCTCTTCTGCATGGCTAAAACAACGTCGTCAGTCTAAGTCTGTTGCTAGCATCTTGTTGGACATGCGGTCAATTGGATATGAGCCTGATAGCAGCATATGTAATTATCTTATATCCTCTCTTTGTGCCATTGATGAGTTAGCTGAGGCATTTCAAGTCTTGAAGGGTATGGGGGGAGCAGGATGCGTCCCTGACTTGGAGAGTTATGGCACTTTAATTAGTTCATCAACAGCAGTTAGACGGACAGCTGAGGCAGTGGAACTGCTGAAAGAAATGGTTGTAAAAGTTAAGTTGACACCAAGACGAGGAACGGTCATTAACGTTGTGGCTGCATTACGAGCAAACCGAGAGATAAGGAGAGCAGTTGAGATCATTGAGCTGTTGGAGAAGGAGAGTTACAATGTTGGATTTGAGAGTTATGAGATTCTTGTTGAAGGTTGTCTGGAGTGTCGTGAGTATATTTTAGCAGGAAAGGTGGTCATGGGGATGACAGAGAAAGGGTATATACCATATATCAGGGTCAGGCATAAGGTTGTTGAGGGGCTGGCTGGTATTGGAGAGACGGAACTGGCATCTGCTGTGAGACGCAGGTTTGCTGAGTTGAGGTCTTAG

Coding sequence (CDS)

ATGAAACTTGGAACTGCAAGGACTTCTTCGTTTTTACTCCATTTCCATCAGTTTTTGCGGCCATGTTCTTCAGTCCCCTCAATAACTCCAGCACAAACGCTTCAAGAAAGCATTAAAGCTGCAGTTGAGTCAAAGTCGTATAAAAAACTTCCAGATTTGTTTCCTTCTTTACAAGAAGCTTGCCAAAACCCCAATCCTTTCTCGTTTCTCTCTACTTTTCCTGTCAACTTCAGAACACAAGTTGTGGATGAGATACTGCAGTCTTTAATCCCTCTCAGACCTCGCTCAAGGCCACAGTTTGTCCATGCCTCTCTGCTTTTCTATACTCTTCAAAGCCCTTCACCCCTTCCCCTCTCTCTTCCAGTTCTCCAGCGGATTCTCCACTCTGGTTGTTTTCCTGTCCCTCAGACCCACCTTCTCCTCTCTTCTGCATGGCTAAAACAACGTCGTCAGTCTAAGTCTGTTGCTAGCATCTTGTTGGACATGCGGTCAATTGGATATGAGCCTGATAGCAGCATATGTAATTATCTTATATCCTCTCTTTGTGCCATTGATGAGTTAGCTGAGGCATTTCAAGTCTTGAAGGGTATGGGGGGAGCAGGATGCGTCCCTGACTTGGAGAGTTATGGCACTTTAATTAGTTCATCAACAGCAGTTAGACGGACAGCTGAGGCAGTGGAACTGCTGAAAGAAATGGTTGTAAAAGTTAAGTTGACACCAAGACGAGGAACGGTCATTAACGTTGTGGCTGCATTACGAGCAAACCGAGAGATAAGGAGAGCAGTTGAGATCATTGAGCTGTTGGAGAAGGAGAGTTACAATGTTGGATTTGAGAGTTATGAGATTCTTGTTGAAGGTTGTCTGGAGTGTCGTGAGTATATTTTAGCAGGAAAGGTGGTCATGGGGATGACAGAGAAAGGGTATATACCATATATCAGGGTCAGGCATAAGGTTGTTGAGGGGCTGGCTGGTATTGGAGAGACGGAACTGGCATCTGCTGTGAGACGCAGGTTTGCTGAGTTGAGGTCTTAG

Protein sequence

MKLGTARTSSFLLHFHQFLRPCSSVPSITPAQTLQESIKAAVESKSYKKLPDLFPSLQEACQNPNPFSFLSTFPVNFRTQVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSLPVLQRILHSGCFPVPQTHLLLSSAWLKQRRQSKSVASILLDMRSIGYEPDSSICNYLISSLCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTPRRGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVVMGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS
Homology
[Close]
BLAST of CmaCh02G001880 vs. Swiss-Prot
Match: PPR16_ARATH (Pentatricopeptide repeat-containing protein At1g06270 OS=Arabidopsis thaliana GN=At1g06270 PE=2 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 2.0e-98
Identity = 183/317 (57.73%), Postives = 242/317 (76.34%), Query Frame = 1 

Query: 27  SITPAQTLQESIKAAVESKSYKKLPDLFPSLQEACQNPNPFSFLSTFPVNFRTQVVDEIL 86
           SI+  + ++++IK AVE+K Y ++P+L  SL+E  QN   FSFLS F  + R +V+DEIL
Sbjct: 27  SISSFEAVEKAIKCAVETKEYLRIPELVVSLKEPYQNSTLFSFLSAFQRHHRIRVIDEIL 86

Query: 87  QSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSLPVLQRILHSGCFPVPQTHLLLSSAWL 146
           QS +P+RPRS P+ V++SLL Y LQS  PLPLS  +LQR L SGC P PQTHLLLS AWL
Sbjct: 87  QSFVPVRPRSLPKIVYSSLLTYCLQSSDPLPLSFAILQRTLRSGCLPNPQTHLLLSDAWL 146

Query: 147 KQRRQSKSVASILLDMRSIGYEPDSSICNYLISSLCAIDELAEAFQVLKGMGGAGCVPDL 206
           ++RR S+SVA I+ +M+ IGY PD+  CNYL+SSLCA+D+L EA +V++ M  AGC+PD+
Sbjct: 147 ERRRGSQSVADIINEMKLIGYSPDTGTCNYLVSSLCAVDKLDEAIKVVEEMSAAGCIPDV 206

Query: 207 ESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTPRRGTVINVVAALRANREIRRAVEIIE 266
           ESYG +I+S    R+T + V+++KEMV K  ++PR+G +  V AALRANREI +A+E+IE
Sbjct: 207 ESYGAVINSLCLARKTTDVVKIVKEMVSKAGISPRKGMLTKVAAALRANREIWKAIEMIE 266

Query: 267 LLEKESYNVGFESYEILVEGCLECREYILAGKVVMGMTEKGYIPYIRVRHKVVEGLAGIG 326
            +E   Y V FESYE++VEGCLE REYILAGKVVM MT++G+IPYI+VR KVVE L  IG
Sbjct: 267 FVESRDYPVEFESYEVVVEGCLEVREYILAGKVVMRMTDRGFIPYIKVRQKVVERLINIG 326

Query: 327 ETELASAVRRRFAELRS 344
           E +LA  VR+R +ELRS
Sbjct: 327 EWKLACTVRQRVSELRS 343

[Close]
BLAST of CmaCh02G001880 vs. Swiss-Prot
Match: PP281_ARATH (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.5e-10
Identity = 76/321 (23.68%), Postives = 132/321 (41.12%), Query Frame = 1 

Query: 18  FLRPCSSVPSITPAQ-TLQESIKAAVESKSYKKLPDLFPSLQEACQNPNPFSFLSTFPVN 77
           F++  S+     P Q T    +    ++   K   ++   + +   +P+ +++ S     
Sbjct: 281 FIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGL 340

Query: 78  FRTQVVDEILQSLIPLRPRS-RPQFVHASLLFYTLQSPSPLPLSLPVLQRILHSGCFPVP 137
            +   V E ++ L  +  R   P  V  + L  TL   + +  +  + + +   G  P  
Sbjct: 341 CKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDV 400

Query: 138 QTHLLLSSAWLKQRRQSKSVASILLDMRSIGYEPDSSICNYLISSLCAIDELAEAFQVLK 197
            T   L    L   R  +    +  +MRS G EPD    N LI SLC+  +L EA  +LK
Sbjct: 401 CTFNSLIQG-LCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLK 460

Query: 198 GMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTPRRGTVINVVAALRAN 257
            M  +GC   + +Y TLI       +T EA E+  EM V   ++    T   ++  L  +
Sbjct: 461 QMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVH-GVSRNSVTYNTLIDGLCKS 520

Query: 258 REIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVVMGMTEKGYIPYIRVR 317
           R +  A ++++ +  E       +Y  L+       +   A  +V  MT  G  P I   
Sbjct: 521 RRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTY 580

Query: 318 HKVVEGLAGIGETELASAVRR 337
             ++ GL   G  E+AS + R
Sbjct: 581 GTLISGLCKAGRVEVASKLLR 599

[Close]
BLAST of CmaCh02G001880 vs. Swiss-Prot
Match: PPR36_ARATH (Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.3e-09
Identity = 60/249 (24.10%), Postives = 108/249 (43.37%), Query Frame = 1 

Query: 92  LRPRSRPQFVHASLLFYTLQSPSPLPLSLPVLQRILHSGCFPVPQTHLLLSSAWLKQRRQ 151
           ++ +  P  V  S+L  +      L  +  + + ++H G  P   T+  L   + K+   
Sbjct: 325 IKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHL 384

Query: 152 SKSVASILLDMRSIGYEPDSSICNYLISSLCAIDELAEAFQVLKGMGGAGCVPDLESYGT 211
            K+   + L M S G +P+    N LI+  C  + + +  ++ + M   G V D  +Y T
Sbjct: 385 DKANQMVDL-MVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNT 444

Query: 212 LISSSTAVRRTAEAVELLKEMVVKVKLTPRRGTVINVVAALRANREIRRAVEIIELLEKE 271
           LI     + +   A EL +EMV + K+ P   T   ++  L  N E  +A+EI E +EK 
Sbjct: 445 LIQGFCELGKLNVAKELFQEMVSR-KVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKS 504

Query: 272 SYNVGFESYEILVEGCLECREYILAGKVVMGMTEKGYIPYIRVRHKVVEGLAGIGETELA 331
              +    Y I++ G     +   A  +   +  KG  P ++  + ++ GL   G    A
Sbjct: 505 KMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEA 564

Query: 332 SAVRRRFAE 341
             + R+  E
Sbjct: 565 ELLFRKMEE 571

[Close]
BLAST of CmaCh02G001880 vs. Swiss-Prot
Match: PPR28_ARATH (Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 8.6e-09
Identity = 55/232 (23.71%), Postives = 106/232 (45.69%), Query Frame = 1 

Query: 92  LRPRSRPQFVHASLLFYTLQSPSPLPLSLPVLQRILHSGCFPVPQTHLLLSSAWLKQRRQ 151
           LR    P  V  ++L   L     L  ++ +L+++   GC P   ++  L   + K+++ 
Sbjct: 336 LRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKM 395

Query: 152 SKSVASILLDMRSIGYEPDSSICNYLISSLCAIDELAEAFQVLKGMGGAGCVPDLESYGT 211
            +++   L  M S G  PD    N ++++LC   ++ +A ++L  +   GC P L +Y T
Sbjct: 396 DRAI-EYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNT 455

Query: 212 LISSSTAVRRTAEAVELLKEMVVKVKLTPRRGTVINVVAALRANREIRRAVEIIELLEKE 271
           +I       +T +A++LL EM  K  L P   T  ++V  L    ++  A++     E+ 
Sbjct: 456 VIDGLAKAGKTGKAIKLLDEMRAK-DLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM 515

Query: 272 SYNVGFESYEILVEGCLECREYILAGKVVMGMTEKGYIPYIRVRHKVVEGLA 324
                  ++  ++ G  + R+   A   ++ M  +G  P       ++EGLA
Sbjct: 516 GIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLA 565

[Close]
BLAST of CmaCh02G001880 vs. Swiss-Prot
Match: PP344_ARATH (Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.5e-08
Identity = 51/204 (25.00%), Postives = 98/204 (48.04%), Query Frame = 1 

Query: 119 SLPVLQRILHSGCFPVPQTHLLLSSAWLKQRRQSKSVASILLDMRSIGYEPDSSICNYLI 178
           ++ V +R++  G  P  QT+  L    L +RR   SV  +L +M ++G +P+       I
Sbjct: 207 AMEVYRRMILEGFRPSLQTYSSLMVG-LGKRRDIDSVMGLLKEMETLGLKPNVYTFTICI 266

Query: 179 SSLCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKL 238
             L    ++ EA+++LK M   GC PD+ +Y  LI +    R+   A E+ ++M    + 
Sbjct: 267 RVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTG-RH 326

Query: 239 TPRRGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGK 298
            P R T I ++     NR++    +    +EK+ +     ++ ILV+   +   +  A  
Sbjct: 327 KPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFD 386

Query: 299 VVMGMTEKGYIPYIRVRHKVVEGL 323
            +  M ++G +P +   + ++ GL
Sbjct: 387 TLDVMRDQGILPNLHTYNTLICGL 408

[Close]
BLAST of CmaCh02G001880 vs. TrEMBL
Match: A0A0A0LFL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G013260 PE=4 SV=1)

HSP 1 Score: 545.4 bits (1404), Expect = 4.9e-152
Identity = 277/343 (80.76%), Postives = 312/343 (90.96%), Query Frame = 1 

Query: 1   MKLGTARTSSFLLHFHQFLRPCSSVPSITPAQTLQESIKAAVESKSYKKLPDLFPSLQEA 60
           M +G  +TS+FLL+FH FL   SS+ SI+P+QTLQ+SIKAAVESKSYKKLPDLFPSLQEA
Sbjct: 1   MNIGRTKTSAFLLNFHHFLGQYSSIHSISPSQTLQDSIKAAVESKSYKKLPDLFPSLQEA 60

Query: 61  CQNPNPFSFLSTFPVNFRTQVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120
           C NPN F FLSTFP+N RTQVVDEILQSLI +RPRS+ QFVH SLLFYTLQSPSP PLSL
Sbjct: 61  CHNPNLFLFLSTFPLNLRTQVVDEILQSLISIRPRSKSQFVHGSLLFYTLQSPSPFPLSL 120

Query: 121 PVLQRILHSGCFPVPQTHLLLSSAWLKQRRQSKSVASILLDMRSIGYEPDSSICNYLISS 180
           PVLQRILHSGC P PQTH LLSSAWLKQR Q+KSVA+IL+DM+SIGY+PDS+ICNYLISS
Sbjct: 121 PVLQRILHSGCVPSPQTHFLLSSAWLKQRSQAKSVANILMDMQSIGYKPDSNICNYLISS 180

Query: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240
           LC+I ELAEAFQVLKGMGGAGC+PDLESYGTLI ++TAVRRT +AVELLKEMVVKVKL P
Sbjct: 181 LCSIGELAEAFQVLKGMGGAGCIPDLESYGTLIHAATAVRRTDKAVELLKEMVVKVKLMP 240

Query: 241 RRGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVV 300
           R+GT+ NVVAALR NRE+RRAVEIIELLE++S++VGFESYE+LVEGCLECREYILAGKV 
Sbjct: 241 RQGTITNVVAALRTNREVRRAVEIIELLERDSHDVGFESYELLVEGCLECREYILAGKVT 300

Query: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 344
           MGMT++G+IPYI+VR +VVEGLAGIGE ELASAVRRRF EL S
Sbjct: 301 MGMTDRGFIPYIKVRQEVVEGLAGIGEVELASAVRRRFVELGS 343

[Close]
BLAST of CmaCh02G001880 vs. TrEMBL
Match: E0CTM4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02610 PE=4 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 1.1e-122
Identity = 229/343 (66.76%), Postives = 274/343 (79.88%), Query Frame = 1 

Query: 1   MKLGTARTSSFLLHFHQFLRPCSSVPSITPAQTLQESIKAAVESKSYKKLPDLFPSLQEA 60
           M +G  +    L HFH  LR  SS+ SIT +QTL+ESIKAAVESK+Y+K+PDL  SL+E 
Sbjct: 1   MAIGATKLCRSLFHFHYSLRQISSIHSITSSQTLEESIKAAVESKTYQKIPDLLISLEET 60

Query: 61  CQNPNPFSFLSTFPVNFRTQVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120
           C NPNPFSFLSTF  N RTQVVDEILQS IPLRPRSRPQ  +A LL +TLQS +PLPL+L
Sbjct: 61  CLNPNPFSFLSTFSQNLRTQVVDEILQSFIPLRPRSRPQIAYACLLSFTLQSANPLPLAL 120

Query: 121 PVLQRILHSGCFPVPQTHLLLSSAWLKQRRQSKSVASILLDMRSIGYEPDSSICNYLISS 180
            +LQR L SGC PVPQTHLLLSSAWL +RRQS SV++IL +M+SIGY PD   CNYLI S
Sbjct: 121 AILQRTLRSGCIPVPQTHLLLSSAWLSRRRQSHSVSNILSEMQSIGYYPDCGTCNYLILS 180

Query: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240
           LCAID+L EA  VLK MG  GC+PDLE YG++I +  A+RRT +A EL+KEMV K+ LTP
Sbjct: 181 LCAIDQLVEAVIVLKSMGQVGCIPDLEGYGSVIGAMCAMRRTTDATELMKEMVAKIGLTP 240

Query: 241 RRGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVV 300
           R+GTV+N+VAALRA +EI +AVE+IE LE E +N GF SYE ++EGCL C E++LAGKVV
Sbjct: 241 RQGTVLNLVAALRAKKEIWKAVEMIEFLEGEDFNAGFASYESVLEGCLACHEFVLAGKVV 300

Query: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 344
           MGMT +G+IPYI VR KVVEGLA +GE +LA AVR+RFA+LRS
Sbjct: 301 MGMTARGFIPYIGVRQKVVEGLANLGEWKLALAVRQRFADLRS 343

[Close]
BLAST of CmaCh02G001880 vs. TrEMBL
Match: A0A067DSI9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046547mg PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 2.0e-113
Identity = 209/343 (60.93%), Postives = 272/343 (79.30%), Query Frame = 1 

Query: 1   MKLGTARTSSFLLHFHQFLRPCSSVPSITPAQTLQESIKAAVESKSYKKLPDLFPSLQEA 60
           M +G  ++   L++F   L   SS+ S++  +TL+E+++AAV++K Y+++P+L  S +EA
Sbjct: 1   MMIGAIKSCRSLVNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEA 60

Query: 61  CQNPNPFSFLSTFPVNFRTQVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120
           CQNPNPFSFLS FP N R +V+DE+L+S IPLRPRSRP+  +  LL YTLQS  PLPL+L
Sbjct: 61  CQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLAL 120

Query: 121 PVLQRILHSGCFPVPQTHLLLSSAWLKQRRQSKSVASILLDMRSIGYEPDSSICNYLISS 180
            +LQR L SGC PVPQ  LLLSSAWL++R QS+SVA ILL+M+SIGY PD   CNYL+SS
Sbjct: 121 AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180

Query: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240
           LCAID+L EA +VLKGM  A CVPDLESY  +I + +  R+T +AVE++KEMV+ + L P
Sbjct: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240

Query: 241 RRGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVV 300
           R+G VI V AALRANRE+ +AVE+IE LE++   +GF+ YE++VEGCLECREYILAGK V
Sbjct: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300

Query: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 344
           MGMTE+G+IPYI+VR KVVEGLAG+GE +LA+ VR+RFAEL+S
Sbjct: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343

[Close]
BLAST of CmaCh02G001880 vs. TrEMBL
Match: M5WQ10_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021626mg PE=4 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 2.6e-113
Identity = 218/343 (63.56%), Postives = 265/343 (77.26%), Query Frame = 1 

Query: 1   MKLGTARTSSFLLHFHQFLRPCSSVPSITPAQTLQESIKAAVESKSYKKLPDLFPSLQEA 60
           M +  A+     L  H  L    S+ SI+ +Q LQE+IK AVE+K+Y+K+PDL  S  +A
Sbjct: 1   MAIRAAKFCRSFLPLHCRLLQYCSIYSISSSQMLQETIKNAVEAKTYQKIPDLLKSSAQA 60

Query: 61  CQNPNPFSFLSTFPVNFRTQVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120
           CQNPNPFSFLS+FP N RTQVVDEILQS IPLRPRSR Q  ++ LL +TLQ  +P PL+L
Sbjct: 61  CQNPNPFSFLSSFPHNLRTQVVDEILQSFIPLRPRSRGQIAYSYLLSFTLQCSNPFPLAL 120

Query: 121 PVLQRILHSGCFPVPQTHLLLSSAWLKQRRQSKSVASILLDMRSIGYEPDSSICNYLISS 180
            +LQR L SGC PVPQT LLLSSAWL  R +S SV+ ILL+M+SIGY PD   CNYLISS
Sbjct: 121 AILQRTLRSGCIPVPQTLLLLSSAWLNCRNESHSVSKILLEMQSIGYHPDCGTCNYLISS 180

Query: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240
           LC++D+L EA +VLK M  AGCVPDLES+ T+I +   VRRTAEA++++K+MV KV LTP
Sbjct: 181 LCSVDQLNEAVKVLKEMSRAGCVPDLESFDTVIGAMCTVRRTAEAIDMIKQMVEKVGLTP 240

Query: 241 RRGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVV 300
           R+GT+  V AALRANR I RAVE+IE LE++ Y VGFESYE++V GCL+C EYILAGKVV
Sbjct: 241 RQGTIAKVAAALRANRNIWRAVEMIEFLERDGYPVGFESYELVVNGCLDCGEYILAGKVV 300

Query: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 344
           MGMTE+G+IPYIR R KVVE LAG GE +LA +VR+RF ELRS
Sbjct: 301 MGMTERGFIPYIRTRQKVVERLAGAGEWKLACSVRQRFGELRS 343

[Close]
BLAST of CmaCh02G001880 vs. TrEMBL
Match: V4UCI9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017507mg PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 9.9e-113
Identity = 207/343 (60.35%), Postives = 271/343 (79.01%), Query Frame = 1 

Query: 1   MKLGTARTSSFLLHFHQFLRPCSSVPSITPAQTLQESIKAAVESKSYKKLPDLFPSLQEA 60
           M +G  ++   L++F   L   SS+ S++  +TL+E+++AAV++K Y+++P+L  S +EA
Sbjct: 1   MMIGAIKSCRSLVNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEA 60

Query: 61  CQNPNPFSFLSTFPVNFRTQVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120
           CQNPNPFSFLS FP N R +V+DE+L+S IPLRPRSRP+  +  LL YTLQS  PLPL+L
Sbjct: 61  CQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLAL 120

Query: 121 PVLQRILHSGCFPVPQTHLLLSSAWLKQRRQSKSVASILLDMRSIGYEPDSSICNYLISS 180
            +LQR L SGC PVPQ  LLLSSAWL++R QS+SVA ILL+M+SIGY PD   CNYL+SS
Sbjct: 121 AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180

Query: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240
           LCAID+L EA +VLKGM    C+PDLESY  +I + +  R+T +AVE++KEMV+ + L P
Sbjct: 181 LCAIDQLVEAAKVLKGMSNVECIPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240

Query: 241 RRGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVV 300
           R+G VI V AALRANRE+ +AVE+I+ LE++   +GF+ YE++VEGCLECREYILAGK V
Sbjct: 241 RQGMVIKVAAALRANREMWKAVEMIKFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300

Query: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 344
           MGMTE+G+IPYI+VR KVVEGLAG+GE +LAS VR+RFAEL+S
Sbjct: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLASVVRQRFAELKS 343

[Close]
BLAST of CmaCh02G001880 vs. TAIR10
Match: AT1G06270.1 (AT1G06270.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 360.5 bits (924), Expect = 1.1e-99
Identity = 183/317 (57.73%), Postives = 242/317 (76.34%), Query Frame = 1 

Query: 27  SITPAQTLQESIKAAVESKSYKKLPDLFPSLQEACQNPNPFSFLSTFPVNFRTQVVDEIL 86
           SI+  + ++++IK AVE+K Y ++P+L  SL+E  QN   FSFLS F  + R +V+DEIL
Sbjct: 27  SISSFEAVEKAIKCAVETKEYLRIPELVVSLKEPYQNSTLFSFLSAFQRHHRIRVIDEIL 86

Query: 87  QSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSLPVLQRILHSGCFPVPQTHLLLSSAWL 146
           QS +P+RPRS P+ V++SLL Y LQS  PLPLS  +LQR L SGC P PQTHLLLS AWL
Sbjct: 87  QSFVPVRPRSLPKIVYSSLLTYCLQSSDPLPLSFAILQRTLRSGCLPNPQTHLLLSDAWL 146

Query: 147 KQRRQSKSVASILLDMRSIGYEPDSSICNYLISSLCAIDELAEAFQVLKGMGGAGCVPDL 206
           ++RR S+SVA I+ +M+ IGY PD+  CNYL+SSLCA+D+L EA +V++ M  AGC+PD+
Sbjct: 147 ERRRGSQSVADIINEMKLIGYSPDTGTCNYLVSSLCAVDKLDEAIKVVEEMSAAGCIPDV 206

Query: 207 ESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTPRRGTVINVVAALRANREIRRAVEIIE 266
           ESYG +I+S    R+T + V+++KEMV K  ++PR+G +  V AALRANREI +A+E+IE
Sbjct: 207 ESYGAVINSLCLARKTTDVVKIVKEMVSKAGISPRKGMLTKVAAALRANREIWKAIEMIE 266

Query: 267 LLEKESYNVGFESYEILVEGCLECREYILAGKVVMGMTEKGYIPYIRVRHKVVEGLAGIG 326
            +E   Y V FESYE++VEGCLE REYILAGKVVM MT++G+IPYI+VR KVVE L  IG
Sbjct: 267 FVESRDYPVEFESYEVVVEGCLEVREYILAGKVVMRMTDRGFIPYIKVRQKVVERLINIG 326

Query: 327 ETELASAVRRRFAELRS 344
           E +LA  VR+R +ELRS
Sbjct: 327 EWKLACTVRQRVSELRS 343

[Close]
BLAST of CmaCh02G001880 vs. TAIR10
Match: AT3G53700.1 (AT3G53700.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 67.0 bits (162), Expect = 2.6e-11
Identity = 76/321 (23.68%), Postives = 132/321 (41.12%), Query Frame = 1 

Query: 18  FLRPCSSVPSITPAQ-TLQESIKAAVESKSYKKLPDLFPSLQEACQNPNPFSFLSTFPVN 77
           F++  S+     P Q T    +    ++   K   ++   + +   +P+ +++ S     
Sbjct: 281 FIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGL 340

Query: 78  FRTQVVDEILQSLIPLRPRS-RPQFVHASLLFYTLQSPSPLPLSLPVLQRILHSGCFPVP 137
            +   V E ++ L  +  R   P  V  + L  TL   + +  +  + + +   G  P  
Sbjct: 341 CKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDV 400

Query: 138 QTHLLLSSAWLKQRRQSKSVASILLDMRSIGYEPDSSICNYLISSLCAIDELAEAFQVLK 197
            T   L    L   R  +    +  +MRS G EPD    N LI SLC+  +L EA  +LK
Sbjct: 401 CTFNSLIQG-LCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLK 460

Query: 198 GMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTPRRGTVINVVAALRAN 257
            M  +GC   + +Y TLI       +T EA E+  EM V   ++    T   ++  L  +
Sbjct: 461 QMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVH-GVSRNSVTYNTLIDGLCKS 520

Query: 258 REIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVVMGMTEKGYIPYIRVR 317
           R +  A ++++ +  E       +Y  L+       +   A  +V  MT  G  P I   
Sbjct: 521 RRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTY 580

Query: 318 HKVVEGLAGIGETELASAVRR 337
             ++ GL   G  E+AS + R
Sbjct: 581 GTLISGLCKAGRVEVASKLLR 599

[Close]
BLAST of CmaCh02G001880 vs. TAIR10
Match: AT1G12300.1 (AT1G12300.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-10
Identity = 60/249 (24.10%), Postives = 108/249 (43.37%), Query Frame = 1 

Query: 92  LRPRSRPQFVHASLLFYTLQSPSPLPLSLPVLQRILHSGCFPVPQTHLLLSSAWLKQRRQ 151
           ++ +  P  V  S+L  +      L  +  + + ++H G  P   T+  L   + K+   
Sbjct: 325 IKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHL 384

Query: 152 SKSVASILLDMRSIGYEPDSSICNYLISSLCAIDELAEAFQVLKGMGGAGCVPDLESYGT 211
            K+   + L M S G +P+    N LI+  C  + + +  ++ + M   G V D  +Y T
Sbjct: 385 DKANQMVDL-MVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNT 444

Query: 212 LISSSTAVRRTAEAVELLKEMVVKVKLTPRRGTVINVVAALRANREIRRAVEIIELLEKE 271
           LI     + +   A EL +EMV + K+ P   T   ++  L  N E  +A+EI E +EK 
Sbjct: 445 LIQGFCELGKLNVAKELFQEMVSR-KVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKS 504

Query: 272 SYNVGFESYEILVEGCLECREYILAGKVVMGMTEKGYIPYIRVRHKVVEGLAGIGETELA 331
              +    Y I++ G     +   A  +   +  KG  P ++  + ++ GL   G    A
Sbjct: 505 KMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEA 564

Query: 332 SAVRRRFAE 341
             + R+  E
Sbjct: 565 ELLFRKMEE 571

[Close]
BLAST of CmaCh02G001880 vs. TAIR10
Match: AT1G09900.1 (AT1G09900.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-10
Identity = 55/232 (23.71%), Postives = 106/232 (45.69%), Query Frame = 1 

Query: 92  LRPRSRPQFVHASLLFYTLQSPSPLPLSLPVLQRILHSGCFPVPQTHLLLSSAWLKQRRQ 151
           LR    P  V  ++L   L     L  ++ +L+++   GC P   ++  L   + K+++ 
Sbjct: 336 LRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKM 395

Query: 152 SKSVASILLDMRSIGYEPDSSICNYLISSLCAIDELAEAFQVLKGMGGAGCVPDLESYGT 211
            +++   L  M S G  PD    N ++++LC   ++ +A ++L  +   GC P L +Y T
Sbjct: 396 DRAI-EYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNT 455

Query: 212 LISSSTAVRRTAEAVELLKEMVVKVKLTPRRGTVINVVAALRANREIRRAVEIIELLEKE 271
           +I       +T +A++LL EM  K  L P   T  ++V  L    ++  A++     E+ 
Sbjct: 456 VIDGLAKAGKTGKAIKLLDEMRAK-DLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM 515

Query: 272 SYNVGFESYEILVEGCLECREYILAGKVVMGMTEKGYIPYIRVRHKVVEGLA 324
                  ++  ++ G  + R+   A   ++ M  +G  P       ++EGLA
Sbjct: 516 GIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLA 565

[Close]
BLAST of CmaCh02G001880 vs. TAIR10
Match: AT1G62680.1 (AT1G62680.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 62.0 bits (149), Expect = 8.2e-10
Identity = 52/175 (29.71%), Postives = 88/175 (50.29%), Query Frame = 1 

Query: 118 LSLPVLQRILHSGCFPVPQTHLLLSSAWLKQRRQSKSVASILLDMRSIGYEPDSSICNYL 177
           L+L +L ++L  G  P   T   L + + ++ R S +V S++  M  IGY+PD    N +
Sbjct: 138 LALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAV-SLVDKMVEIGYKPDIVAYNAI 197

Query: 178 ISSLCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVK 237
           I SLC    + +AF   K +   G  P++ +Y  L++      R ++A  LL +M +K K
Sbjct: 198 IDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM-IKKK 257

Query: 238 LTPRRGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEG-CLECR 292
           +TP   T   ++ A   N ++  A E+ E + + S +    +Y  L+ G CL  R
Sbjct: 258 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDR 310

[Close]
BLAST of CmaCh02G001880 vs. NCBI nr
Match: gi|449443213|ref|XP_004139374.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g06270 [Cucumis sativus])

HSP 1 Score: 545.4 bits (1404), Expect = 7.0e-152
Identity = 277/343 (80.76%), Postives = 312/343 (90.96%), Query Frame = 1 

Query: 1   MKLGTARTSSFLLHFHQFLRPCSSVPSITPAQTLQESIKAAVESKSYKKLPDLFPSLQEA 60
           M +G  +TS+FLL+FH FL   SS+ SI+P+QTLQ+SIKAAVESKSYKKLPDLFPSLQEA
Sbjct: 1   MNIGRTKTSAFLLNFHHFLGQYSSIHSISPSQTLQDSIKAAVESKSYKKLPDLFPSLQEA 60

Query: 61  CQNPNPFSFLSTFPVNFRTQVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120
           C NPN F FLSTFP+N RTQVVDEILQSLI +RPRS+ QFVH SLLFYTLQSPSP PLSL
Sbjct: 61  CHNPNLFLFLSTFPLNLRTQVVDEILQSLISIRPRSKSQFVHGSLLFYTLQSPSPFPLSL 120

Query: 121 PVLQRILHSGCFPVPQTHLLLSSAWLKQRRQSKSVASILLDMRSIGYEPDSSICNYLISS 180
           PVLQRILHSGC P PQTH LLSSAWLKQR Q+KSVA+IL+DM+SIGY+PDS+ICNYLISS
Sbjct: 121 PVLQRILHSGCVPSPQTHFLLSSAWLKQRSQAKSVANILMDMQSIGYKPDSNICNYLISS 180

Query: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240
           LC+I ELAEAFQVLKGMGGAGC+PDLESYGTLI ++TAVRRT +AVELLKEMVVKVKL P
Sbjct: 181 LCSIGELAEAFQVLKGMGGAGCIPDLESYGTLIHAATAVRRTDKAVELLKEMVVKVKLMP 240

Query: 241 RRGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVV 300
           R+GT+ NVVAALR NRE+RRAVEIIELLE++S++VGFESYE+LVEGCLECREYILAGKV 
Sbjct: 241 RQGTITNVVAALRTNREVRRAVEIIELLERDSHDVGFESYELLVEGCLECREYILAGKVT 300

Query: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 344
           MGMT++G+IPYI+VR +VVEGLAGIGE ELASAVRRRF EL S
Sbjct: 301 MGMTDRGFIPYIKVRQEVVEGLAGIGEVELASAVRRRFVELGS 343

[Close]
BLAST of CmaCh02G001880 vs. NCBI nr
Match: gi|659070534|ref|XP_008455557.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g06270 [Cucumis melo])

HSP 1 Score: 542.7 bits (1397), Expect = 4.5e-151
Identity = 277/343 (80.76%), Postives = 311/343 (90.67%), Query Frame = 1 

Query: 1   MKLGTARTSSFLLHFHQFLRPCSSVPSITPAQTLQESIKAAVESKSYKKLPDLFPSLQEA 60
           M +G  +TS+FLL+FH FL  CSS+ SI+P+QTLQ+SIKAAVESKSYKKLP LFPSLQEA
Sbjct: 1   MNIGRTKTSAFLLNFHHFLEQCSSIHSISPSQTLQDSIKAAVESKSYKKLPGLFPSLQEA 60

Query: 61  CQNPNPFSFLSTFPVNFRTQVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120
           C NPN F FLSTFP+N RTQVVDEILQSLI +RPRS+ QFVH SLLFYTLQSPSP PLSL
Sbjct: 61  CHNPNLFLFLSTFPLNLRTQVVDEILQSLIFVRPRSKSQFVHGSLLFYTLQSPSPFPLSL 120

Query: 121 PVLQRILHSGCFPVPQTHLLLSSAWLKQRRQSKSVASILLDMRSIGYEPDSSICNYLISS 180
           PVLQRILHSGC P PQTH LLSSAWLKQR  +KSVA+IL+DM+SIGY+PDS+ICNYLISS
Sbjct: 121 PVLQRILHSGCVPSPQTHFLLSSAWLKQRSHAKSVANILMDMQSIGYKPDSNICNYLISS 180

Query: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240
           LC+I ELAEAFQVLKGMGGAGCVPDLESYGTLI ++TAVRRT +AVELLKEMVVKVKL P
Sbjct: 181 LCSIGELAEAFQVLKGMGGAGCVPDLESYGTLIRAATAVRRTDKAVELLKEMVVKVKLMP 240

Query: 241 RRGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVV 300
           R+ T+INVVAALRANRE+RRAVEIIELLE++S++VGFESYE+LVEGCLECREYILAGKV+
Sbjct: 241 RQRTIINVVAALRANREVRRAVEIIELLERDSHDVGFESYELLVEGCLECREYILAGKVI 300

Query: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 344
           M MT++G+IPYI+VR KVVEGL GIGE ELASAVRRRF EL S
Sbjct: 301 MAMTDRGFIPYIKVRQKVVEGLYGIGELELASAVRRRFVELGS 343

[Close]
BLAST of CmaCh02G001880 vs. NCBI nr
Match: gi|225446521|ref|XP_002278909.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g06270 [Vitis vinifera])

HSP 1 Score: 448.0 bits (1151), Expect = 1.5e-122
Identity = 229/343 (66.76%), Postives = 274/343 (79.88%), Query Frame = 1 

Query: 1   MKLGTARTSSFLLHFHQFLRPCSSVPSITPAQTLQESIKAAVESKSYKKLPDLFPSLQEA 60
           M +G  +    L HFH  LR  SS+ SIT +QTL+ESIKAAVESK+Y+K+PDL  SL+E 
Sbjct: 1   MAIGATKLCRSLFHFHYSLRQISSIHSITSSQTLEESIKAAVESKTYQKIPDLLISLEET 60

Query: 61  CQNPNPFSFLSTFPVNFRTQVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120
           C NPNPFSFLSTF  N RTQVVDEILQS IPLRPRSRPQ  +A LL +TLQS +PLPL+L
Sbjct: 61  CLNPNPFSFLSTFSQNLRTQVVDEILQSFIPLRPRSRPQIAYACLLSFTLQSANPLPLAL 120

Query: 121 PVLQRILHSGCFPVPQTHLLLSSAWLKQRRQSKSVASILLDMRSIGYEPDSSICNYLISS 180
            +LQR L SGC PVPQTHLLLSSAWL +RRQS SV++IL +M+SIGY PD   CNYLI S
Sbjct: 121 AILQRTLRSGCIPVPQTHLLLSSAWLSRRRQSHSVSNILSEMQSIGYYPDCGTCNYLILS 180

Query: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240
           LCAID+L EA  VLK MG  GC+PDLE YG++I +  A+RRT +A EL+KEMV K+ LTP
Sbjct: 181 LCAIDQLVEAVIVLKSMGQVGCIPDLEGYGSVIGAMCAMRRTTDATELMKEMVAKIGLTP 240

Query: 241 RRGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVV 300
           R+GTV+N+VAALRA +EI +AVE+IE LE E +N GF SYE ++EGCL C E++LAGKVV
Sbjct: 241 RQGTVLNLVAALRAKKEIWKAVEMIEFLEGEDFNAGFASYESVLEGCLACHEFVLAGKVV 300

Query: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 344
           MGMT +G+IPYI VR KVVEGLA +GE +LA AVR+RFA+LRS
Sbjct: 301 MGMTARGFIPYIGVRQKVVEGLANLGEWKLALAVRQRFADLRS 343

[Close]
BLAST of CmaCh02G001880 vs. NCBI nr
Match: gi|568829486|ref|XP_006469053.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g06270 [Citrus sinensis])

HSP 1 Score: 417.2 bits (1071), Expect = 2.9e-113
Identity = 209/343 (60.93%), Postives = 272/343 (79.30%), Query Frame = 1 

Query: 1   MKLGTARTSSFLLHFHQFLRPCSSVPSITPAQTLQESIKAAVESKSYKKLPDLFPSLQEA 60
           M +G  ++   L++F   L   SS+ S++  +TL+E+++AAV++K Y+++P+L  S +EA
Sbjct: 1   MMIGAIKSCRSLVNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEA 60

Query: 61  CQNPNPFSFLSTFPVNFRTQVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120
           CQNPNPFSFLS FP N R +V+DE+L+S IPLRPRSRP+  +  LL YTLQS  PLPL+L
Sbjct: 61  CQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLAL 120

Query: 121 PVLQRILHSGCFPVPQTHLLLSSAWLKQRRQSKSVASILLDMRSIGYEPDSSICNYLISS 180
            +LQR L SGC PVPQ  LLLSSAWL++R QS+SVA ILL+M+SIGY PD   CNYL+SS
Sbjct: 121 AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180

Query: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240
           LCAID+L EA +VLKGM  A CVPDLESY  +I + +  R+T +AVE++KEMV+ + L P
Sbjct: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240

Query: 241 RRGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVV 300
           R+G VI V AALRANRE+ +AVE+IE LE++   +GF+ YE++VEGCLECREYILAGK V
Sbjct: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300

Query: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 344
           MGMTE+G+IPYI+VR KVVEGLAG+GE +LA+ VR+RFAEL+S
Sbjct: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343

[Close]
BLAST of CmaCh02G001880 vs. NCBI nr
Match: gi|645245954|ref|XP_008229126.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g06270 [Prunus mume])

HSP 1 Score: 416.8 bits (1070), Expect = 3.7e-113
Identity = 218/343 (63.56%), Postives = 265/343 (77.26%), Query Frame = 1 

Query: 1   MKLGTARTSSFLLHFHQFLRPCSSVPSITPAQTLQESIKAAVESKSYKKLPDLFPSLQEA 60
           M +  A+     L  H  L    S+ SI+ +Q LQE+IK AVE+K+Y+K+PDL  S  +A
Sbjct: 1   MAIRAAKFCRSFLPLHCRLLQYCSIYSISSSQMLQETIKNAVEAKTYQKIPDLLKSSAQA 60

Query: 61  CQNPNPFSFLSTFPVNFRTQVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120
           CQNPNPFSFLSTFP N RTQVVDEILQS IPLRPRSR Q  ++ LL +TLQ  +P PL+L
Sbjct: 61  CQNPNPFSFLSTFPHNLRTQVVDEILQSFIPLRPRSRTQIAYSYLLSFTLQCSNPFPLAL 120

Query: 121 PVLQRILHSGCFPVPQTHLLLSSAWLKQRRQSKSVASILLDMRSIGYEPDSSICNYLISS 180
            +LQR L SGC PVPQT LLLSSAWL  R +S SV+ ILL+M+SIGY PDS  CNYLI S
Sbjct: 121 AILQRTLRSGCIPVPQTLLLLSSAWLNCRNESHSVSKILLEMQSIGYHPDSGTCNYLILS 180

Query: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240
           LC++D+L EA +VL  M  AGCVPDLES+ T+I +   VRRTAEA++++K+MV KV LTP
Sbjct: 181 LCSVDQLNEAVKVLMEMSRAGCVPDLESFDTVIGAMCTVRRTAEAIDMIKQMVEKVGLTP 240

Query: 241 RRGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVV 300
           R+GT+  V AALRANR+I RAVE+IE LE++ Y VGFESYE++V GCL+C EYILAGKVV
Sbjct: 241 RQGTIAKVAAALRANRDIWRAVEMIEFLERDGYPVGFESYELVVNGCLDCGEYILAGKVV 300

Query: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 344
           MGMTE+G+IPYIR R KVVE LAG GE +LA +VR+RF ELRS
Sbjct: 301 MGMTERGFIPYIRTRQKVVERLAGAGEWKLACSVRQRFGELRS 343

The following BLAST results are available for this feature:
BLAST of CmaCh02G001880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPR16_ARATH2.0e-9857.73Pentatricopeptide repeat-containing protein At1g06270 OS=Arabidopsis thaliana GN... [more]
PP281_ARATH4.5e-1023.68Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidop... [more]
PPR36_ARATH2.3e-0924.10Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidop... [more]
PPR28_ARATH8.6e-0923.71Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN... [more]
PP344_ARATH1.5e-0825.00Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidop... [more]
BLAST of CmaCh02G001880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFL3_CUCSA4.9e-15280.76Uncharacterized protein OS=Cucumis sativus GN=Csa_2G013260 PE=4 SV=1[more]
E0CTM4_VITVI1.1e-12266.76Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02610 PE=4 SV=... [more]
A0A067DSI9_CITSI2.0e-11360.93Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046547mg PE=4 SV=1[more]
M5WQ10_PRUPE2.6e-11363.56Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021626mg PE=4 SV=1[more]
V4UCI9_9ROSI9.9e-11360.35Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017507mg PE=4 SV=1[more]
BLAST of CmaCh02G001880 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G06270.11.1e-9957.73 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G53700.12.6e-1123.68 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G12300.11.3e-1024.10 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G09900.14.8e-1023.71 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT1G62680.18.2e-1029.71 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of CmaCh02G001880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443213|ref|XP_004139374.1|7.0e-15280.76PREDICTED: pentatricopeptide repeat-containing protein At1g06270 [Cucumis sativu... [more]
gi|659070534|ref|XP_008455557.1|4.5e-15180.76PREDICTED: pentatricopeptide repeat-containing protein At1g06270 [Cucumis melo][more]
gi|225446521|ref|XP_002278909.1|1.5e-12266.76PREDICTED: pentatricopeptide repeat-containing protein At1g06270 [Vitis vinifera... [more]
gi|568829486|ref|XP_006469053.1|2.9e-11360.93PREDICTED: pentatricopeptide repeat-containing protein At1g06270 [Citrus sinensi... [more]
gi|645245954|ref|XP_008229126.1|3.7e-11363.56PREDICTED: pentatricopeptide repeat-containing protein At1g06270 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0042170 plastid membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G001880.1CmaCh02G001880.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 208..233
score: 0.078coord: 173..202
score:
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 173..205
score: 3.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 276..310
score: 7.333coord: 170..204
score: 9.69coord: 205..235
score: 7.629coord: 134..169
score: 5
NoneNo IPR availableunknownCoilCoilcoord: 251..271
scor
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 62..331
score: 7.2E-38coord: 7..33
score: 7.2