CmoCh02G000800 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G000800
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionProtein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10
LocationCmo_Chr02 : 418964 .. 419527 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAGTGAAAGAGGCAAGGAGTATGGAGAAGGATCGTCGAGCTCGCCACCGACAACAACAACAACCCCGAGTCGCTACGAGTCACAAAAGCGGCGAGATTGGAACACGTTTGGGCAATACTTGAAGAATCAAAGACCACCAGTGGCACTAGCACAGTGCAACTTCAACCATGTGTTGGAGTTCCTAAGATATTTGGATCAATTTGGGAAGACAAAGGTTCATGTCCAAGGTTGTATGTTCTATGGACAGCCAGAGCCACCAGCGCCATGCACCTGCCCACTCAAGCAAGCATGGGGCAGCCTTGATGCGCTGATAGGGCGGTTGAGAGCTGCTTATGAAGAACATGGTGGCTCCCCTGAGACCAACCCTTTTGCAAGTGCTTCAATAAGGGTTTATCTAAGAGAAGTAAGGGAGTGTCAAGCCAAAGCAAGAGGGATTCCTTATAAAAAGAAGAAGAAAAGCAGCAAGGCAAGCAATACCAATACAAATCATGATGATTCAACTACTAATACTTGTTCTTCTTCTTCTTCTTCTGGGATGATGCACTTTTCAACTCCTTAG

mRNA sequence

ATGTCGAGTGAAAGAGGCAAGGAGTATGGAGAAGGATCGTCGAGCTCGCCACCGACAACAACAACAACCCCGAGTCGCTACGAGTCACAAAAGCGGCGAGATTGGAACACGTTTGGGCAATACTTGAAGAATCAAAGACCACCAGTGGCACTAGCACAGTGCAACTTCAACCATGTGTTGGAGTTCCTAAGATATTTGGATCAATTTGGGAAGACAAAGGTTCATGTCCAAGGTTGTATGTTCTATGGACAGCCAGAGCCACCAGCGCCATGCACCTGCCCACTCAAGCAAGCATGGGGCAGCCTTGATGCGCTGATAGGGCGGTTGAGAGCTGCTTATGAAGAACATGGTGGCTCCCCTGAGACCAACCCTTTTGCAAGTGCTTCAATAAGGGTTTATCTAAGAGAAGTAAGGGAGTGTCAAGCCAAAGCAAGAGGGATTCCTTATAAAAAGAAGAAGAAAAGCAGCAAGGCAAGCAATACCAATACAAATCATGATGATTCAACTACTAATACTTGTTCTTCTTCTTCTTCTTCTGGGATGATGCACTTTTCAACTCCTTAG

Coding sequence (CDS)

ATGTCGAGTGAAAGAGGCAAGGAGTATGGAGAAGGATCGTCGAGCTCGCCACCGACAACAACAACAACCCCGAGTCGCTACGAGTCACAAAAGCGGCGAGATTGGAACACGTTTGGGCAATACTTGAAGAATCAAAGACCACCAGTGGCACTAGCACAGTGCAACTTCAACCATGTGTTGGAGTTCCTAAGATATTTGGATCAATTTGGGAAGACAAAGGTTCATGTCCAAGGTTGTATGTTCTATGGACAGCCAGAGCCACCAGCGCCATGCACCTGCCCACTCAAGCAAGCATGGGGCAGCCTTGATGCGCTGATAGGGCGGTTGAGAGCTGCTTATGAAGAACATGGTGGCTCCCCTGAGACCAACCCTTTTGCAAGTGCTTCAATAAGGGTTTATCTAAGAGAAGTAAGGGAGTGTCAAGCCAAAGCAAGAGGGATTCCTTATAAAAAGAAGAAGAAAAGCAGCAAGGCAAGCAATACCAATACAAATCATGATGATTCAACTACTAATACTTGTTCTTCTTCTTCTTCTTCTGGGATGATGCACTTTTCAACTCCTTAG
Homology
[Close]
BLAST of CmoCh02G000800 vs. Swiss-Prot
Match: LSH10_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana GN=LSH10 PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 9.6e-71
Identity = 133/175 (76.00%), Postives = 145/175 (82.86%), Query Frame = 1 

Query: 4   ERGKEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFL 63
           ERGK   E S S PP T   PSRYESQKRRDWNTFGQYLKNQRPPV ++ C+ NHVL+FL
Sbjct: 6   ERGKSLMESSGSEPPVT---PSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFL 65

Query: 64  RYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSPETN 123
           RYLDQFGKTKVHV GCMFYGQPEPPAPCTCPL+QAWGSLDALIGRLRAAYEE+GG PETN
Sbjct: 66  RYLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETN 125

Query: 124 PFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHDDSTTNTCSSSSS 179
           PFAS +IRVYLREVRECQAKARGIPYKKKKK           +DS++++ S S S
Sbjct: 126 PFASGAIRVYLREVRECQAKARGIPYKKKKKKKPTPEMGGGREDSSSSSSSFSFS 177

[Close]
BLAST of CmoCh02G000800 vs. Swiss-Prot
Match: LSH9_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 OS=Arabidopsis thaliana GN=LSH9 PE=1 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.8e-59
Identity = 107/139 (76.98%), Postives = 121/139 (87.05%), Query Frame = 1 

Query: 17  PPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFLRYLDQFGKTKVHV 76
           PP      SRYESQKRRDWNTF QYLK+Q PP+ ++Q ++ HVL FLRYLDQFGKTKVH 
Sbjct: 28  PPQPQQPLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHH 87

Query: 77  QGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEH-GGSPETNPFASASIRVYLR 136
           Q C+F+GQP+PP PCTCPLKQAWGSLDALIGRLRAAYEEH GGSP+TNPFA+ SIRV+LR
Sbjct: 88  QACVFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLR 147

Query: 137 EVRECQAKARGIPYKKKKK 155
           EVRE QAKARGIPY+KKK+
Sbjct: 148 EVRESQAKARGIPYRKKKR 166

[Close]
BLAST of CmoCh02G000800 vs. Swiss-Prot
Match: G1L8_ORYSJ (Protein G1-like8 OS=Oryza sativa subsp. japonica GN=G1L8 PE=1 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 9.3e-58
Identity = 100/130 (76.92%), Postives = 116/130 (89.23%), Query Frame = 1 

Query: 25  SRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFLRYLDQFGKTKVHVQGCMFYGQ 84
           SRYESQKRRDWNTF QYLKN RPP+ LA+C+  HV+EFL+YLDQFGKTKVH  GC +YGQ
Sbjct: 29  SRYESQKRRDWNTFLQYLKNHRPPLTLARCSGAHVIEFLKYLDQFGKTKVHASGCAYYGQ 88

Query: 85  PEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSPETNPFASASIRVYLREVRECQAKA 144
           P PPAPC CPL+QAWGSLDALIGRLRAAYEE G +PE+NPFA+ ++R+YLREVR+ QAKA
Sbjct: 89  PSPPAPCPCPLRQAWGSLDALIGRLRAAYEESGHAPESNPFAARAVRIYLREVRDAQAKA 148

Query: 145 RGIPYKKKKK 155
           RGIPY+KKK+
Sbjct: 149 RGIPYEKKKR 158

[Close]
BLAST of CmoCh02G000800 vs. Swiss-Prot
Match: LSH7_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana GN=LSH7 PE=1 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.6e-57
Identity = 119/190 (62.63%), Postives = 138/190 (72.63%), Query Frame = 1 

Query: 3   SERGKEYGEGSSS-------------SPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPV 62
           S +GK   EGSS              SPP      SRYESQKRRDWNTF QYL+NQ+PPV
Sbjct: 5   SNKGKGIAEGSSQPQSQPQPQPHQPQSPPNPPAL-SRYESQKRRDWNTFCQYLRNQQPPV 64

Query: 63  ALAQCNFNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRL 122
            ++QC  NH+L+FL+YLDQFGKTKVH+ GC+F+GQ EP   C CPLKQAWGSLDALIGRL
Sbjct: 65  HISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALIGRL 124

Query: 123 RAAYEEHGGSPETNPFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHD--D 178
           RAA+EE+GG PE NPFA   IRV+LREVR+ QAKARG+PYKK+KK  K  N   +HD  D
Sbjct: 125 RAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRKK-RNPMKSHDGED 184

[Close]
BLAST of CmoCh02G000800 vs. Swiss-Prot
Match: G1L8_ORYSI (Protein G1-like8 OS=Oryza sativa subsp. indica GN=OsI_20303 PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.1e-57
Identity = 99/130 (76.15%), Postives = 116/130 (89.23%), Query Frame = 1 

Query: 25  SRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFLRYLDQFGKTKVHVQGCMFYGQ 84
           SRYESQKRRDWNTF QYL+N RPP+ LA+C+  HV+EFL+YLDQFGKTKVH  GC +YGQ
Sbjct: 31  SRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLKYLDQFGKTKVHASGCAYYGQ 90

Query: 85  PEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSPETNPFASASIRVYLREVRECQAKA 144
           P PPAPC CPL+QAWGSLDALIGRLRAAYEE G +PE+NPFA+ ++R+YLREVR+ QAKA
Sbjct: 91  PSPPAPCPCPLRQAWGSLDALIGRLRAAYEESGHAPESNPFAARAVRIYLREVRDAQAKA 150

Query: 145 RGIPYKKKKK 155
           RGIPY+KKK+
Sbjct: 151 RGIPYEKKKR 160

[Close]
BLAST of CmoCh02G000800 vs. TrEMBL
Match: A0A0A0KFP9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G236080 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 2.7e-80
Identity = 158/194 (81.44%), Postives = 169/194 (87.11%), Query Frame = 1 

Query: 7   KEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFLRYL 66
           KEYGEGSS SPP   TTPSRYESQKRRDWNTFGQYLKNQRP VAL+QCNFNHVLEFLRYL
Sbjct: 13  KEYGEGSSKSPP-RATTPSRYESQKRRDWNTFGQYLKNQRPAVALSQCNFNHVLEFLRYL 72

Query: 67  DQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSPETNPFA 126
           DQFGKTKVHVQGCMFYG PEPP+PCTCPLKQAWGSLDALIGRLRAAYEE+GGSPETNPFA
Sbjct: 73  DQFGKTKVHVQGCMFYGHPEPPSPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPFA 132

Query: 127 SASIRVYLREVRECQAKARGIPYKKKKKSSKAS----NTNTN----HDDSTTN-----TC 186
           +ASIR+YLR+VRECQAKARGIPYKKKKK++K      N NTN    HD +TTN     + 
Sbjct: 133 TASIRLYLRQVRECQAKARGIPYKKKKKTNKQQQPTINNNTNNLLIHDSTTTNNISSSSS 192

Query: 187 SSSSSSGMMHFSTP 188
           SSSSSS +MHFSTP
Sbjct: 193 SSSSSSSIMHFSTP 205

[Close]
BLAST of CmoCh02G000800 vs. TrEMBL
Match: M5WSR1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012217mg PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 5.5e-73
Identity = 143/190 (75.26%), Postives = 159/190 (83.68%), Query Frame = 1 

Query: 1   MSSERGKEYGEGSSSSPPT-----TTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCN 60
           MS+ERGK++ +GSSS+           TPSRYESQKRRDWNTFGQYLKNQRPPV L+QCN
Sbjct: 1   MSAERGKDFADGSSSAGSPGDDHQQPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCN 60

Query: 61  FNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEE 120
           +NHVLEFLRYLDQFGKTKVH+QGCMFYGQPEPPAPCTCPL+QAWGSLDALIGRLRAAYEE
Sbjct: 61  YNHVLEFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE 120

Query: 121 HGGSPETNPFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHDDSTTNTCSS 180
           +GGSPETNPFAS +IRVYLREVRECQAKARGIPYKKKKK  K S +   +DD +++T   
Sbjct: 121 NGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKK--KPSPSKGGNDDESSST--- 179

Query: 181 SSSSGMMHFS 186
                 MHFS
Sbjct: 181 ------MHFS 179

[Close]
BLAST of CmoCh02G000800 vs. TrEMBL
Match: W9RWI7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010344 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 5.5e-73
Identity = 137/170 (80.59%), Postives = 148/170 (87.06%), Query Frame = 1 

Query: 1   MSSERGKEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVL 60
           MS +RGK + EGS S  PT  T PSRYESQKRRDWNTFGQYLKNQRPPV L+QCN NHVL
Sbjct: 1   MSIDRGKGFAEGSGSDQPTPAT-PSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNHVL 60

Query: 61  EFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSP 120
           +FLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPL+QAWGSLDALIGRLRAAYEE+GG P
Sbjct: 61  DFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGFP 120

Query: 121 ETNPFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHDDSTT 171
           ETNPFAS +IRVYLREVRECQAKARGIPYKKKKK         +HD+S++
Sbjct: 121 ETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKPDQITKGNDHDESSS 169

[Close]
BLAST of CmoCh02G000800 vs. TrEMBL
Match: A5C9K6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034969 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.6e-72
Identity = 132/157 (84.08%), Postives = 145/157 (92.36%), Query Frame = 1 

Query: 1   MSSERGKEYGEGSSSSP-PTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHV 60
           MSSERGK+  EGSS SP    + TPSRYESQKRRDWNTFGQYLKNQRPPV L+QCN NHV
Sbjct: 1   MSSERGKDLAEGSSRSPGDQQSVTPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNHV 60

Query: 61  LEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGS 120
           L+FLRYLDQFGKTKVH+QGCMF+GQPEPPAPCTCPL+QAWGSLDAL+GRLRAAYEE+GGS
Sbjct: 61  LDFLRYLDQFGKTKVHLQGCMFFGQPEPPAPCTCPLRQAWGSLDALVGRLRAAYEENGGS 120

Query: 121 PETNPFASASIRVYLREVRECQAKARGIPYKKKKKSS 157
           PETNPFAS +IR+YLREVRECQ+KARGIPYKKKKK +
Sbjct: 121 PETNPFASGAIRIYLREVRECQSKARGIPYKKKKKKA 157

[Close]
BLAST of CmoCh02G000800 vs. TrEMBL
Match: F6H4Z7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02160 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 2.7e-72
Identity = 133/163 (81.60%), Postives = 148/163 (90.80%), Query Frame = 1 

Query: 1   MSSERGKEYGEGSSSSP-PTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHV 60
           MSSERGK+  EGSS SP    + TPSRYESQKRRDWNTFGQYLKNQRPPV L+QCN NHV
Sbjct: 1   MSSERGKDLAEGSSRSPGDQQSVTPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNHV 60

Query: 61  LEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGS 120
           L+FLRYLDQFGKTKVH+QGCMF+GQPEPPAPCTCPL+QAWGSLDAL+GRLRAAYEE+GGS
Sbjct: 61  LDFLRYLDQFGKTKVHLQGCMFFGQPEPPAPCTCPLRQAWGSLDALVGRLRAAYEENGGS 120

Query: 121 PETNPFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTN 163
           PETNPFAS +IR+YLREVRECQ+KARGIPYKKKKK +  S ++
Sbjct: 121 PETNPFASGAIRIYLREVRECQSKARGIPYKKKKKKAGESTSS 163

[Close]
BLAST of CmoCh02G000800 vs. TAIR10
Match: AT2G42610.1 (AT2G42610.1 Protein of unknown function (DUF640))

HSP 1 Score: 267.7 bits (683), Expect = 5.4e-72
Identity = 133/175 (76.00%), Postives = 145/175 (82.86%), Query Frame = 1 

Query: 4   ERGKEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFL 63
           ERGK   E S S PP T   PSRYESQKRRDWNTFGQYLKNQRPPV ++ C+ NHVL+FL
Sbjct: 6   ERGKSLMESSGSEPPVT---PSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFL 65

Query: 64  RYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSPETN 123
           RYLDQFGKTKVHV GCMFYGQPEPPAPCTCPL+QAWGSLDALIGRLRAAYEE+GG PETN
Sbjct: 66  RYLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETN 125

Query: 124 PFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHDDSTTNTCSSSSS 179
           PFAS +IRVYLREVRECQAKARGIPYKKKKK           +DS++++ S S S
Sbjct: 126 PFASGAIRVYLREVRECQAKARGIPYKKKKKKKPTPEMGGGREDSSSSSSSFSFS 177

[Close]
BLAST of CmoCh02G000800 vs. TAIR10
Match: AT4G18610.1 (AT4G18610.1 Protein of unknown function (DUF640))

HSP 1 Score: 229.2 bits (583), Expect = 2.1e-60
Identity = 107/139 (76.98%), Postives = 121/139 (87.05%), Query Frame = 1 

Query: 17  PPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFLRYLDQFGKTKVHV 76
           PP      SRYESQKRRDWNTF QYLK+Q PP+ ++Q ++ HVL FLRYLDQFGKTKVH 
Sbjct: 28  PPQPQQPLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHH 87

Query: 77  QGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEH-GGSPETNPFASASIRVYLR 136
           Q C+F+GQP+PP PCTCPLKQAWGSLDALIGRLRAAYEEH GGSP+TNPFA+ SIRV+LR
Sbjct: 88  QACVFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLR 147

Query: 137 EVRECQAKARGIPYKKKKK 155
           EVRE QAKARGIPY+KKK+
Sbjct: 148 EVRESQAKARGIPYRKKKR 166

[Close]
BLAST of CmoCh02G000800 vs. TAIR10
Match: AT1G78815.1 (AT1G78815.1 Protein of unknown function (DUF640))

HSP 1 Score: 223.8 bits (569), Expect = 8.9e-59
Identity = 119/190 (62.63%), Postives = 138/190 (72.63%), Query Frame = 1 

Query: 3   SERGKEYGEGSSS-------------SPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPV 62
           S +GK   EGSS              SPP      SRYESQKRRDWNTF QYL+NQ+PPV
Sbjct: 5   SNKGKGIAEGSSQPQSQPQPQPHQPQSPPNPPAL-SRYESQKRRDWNTFCQYLRNQQPPV 64

Query: 63  ALAQCNFNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRL 122
            ++QC  NH+L+FL+YLDQFGKTKVH+ GC+F+GQ EP   C CPLKQAWGSLDALIGRL
Sbjct: 65  HISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALIGRL 124

Query: 123 RAAYEEHGGSPETNPFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHD--D 178
           RAA+EE+GG PE NPFA   IRV+LREVR+ QAKARG+PYKK+KK  K  N   +HD  D
Sbjct: 125 RAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRKK-RNPMKSHDGED 184

[Close]
BLAST of CmoCh02G000800 vs. TAIR10
Match: AT3G23290.2 (AT3G23290.2 Protein of unknown function (DUF640))

HSP 1 Score: 223.0 bits (567), Expect = 1.5e-58
Identity = 103/142 (72.54%), Postives = 122/142 (85.92%), Query Frame = 1 

Query: 13  SSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFLRYLDQFGKT 72
           SSSS  + T   SRYE+QKRRDWNTFGQYL+N RPP++L++C+  HVLEFLRYLDQFGKT
Sbjct: 35  SSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKT 94

Query: 73  KVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSPETNPFASASIRV 132
           KVH   C F+G P PPAPC CPL+QAWGSLDALIGRLRAA+EE+GGSPETNPF + ++R+
Sbjct: 95  KVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRL 154

Query: 133 YLREVRECQAKARGIPYKKKKK 155
           YLREVR+ QAKARGI Y+KKK+
Sbjct: 155 YLREVRDSQAKARGISYEKKKR 176

[Close]
BLAST of CmoCh02G000800 vs. TAIR10
Match: AT1G07090.1 (AT1G07090.1 Protein of unknown function (DUF640))

HSP 1 Score: 221.9 bits (564), Expect = 3.4e-58
Identity = 111/176 (63.07%), Postives = 135/176 (76.70%), Query Frame = 1 

Query: 5   RGKEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFLR 64
           +G + G    SSPP T   PSRYESQKRRDWNTF QYLKN +PP+AL++C+  HV+EFL+
Sbjct: 13  KGDDPGPSFVSSPPAT---PSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLK 72

Query: 65  YLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSPETNP 124
           YLDQFGKTKVHV  C ++G  +PP+PC+CPLKQAWGSLDALIGRLRAAYEE+GG P++NP
Sbjct: 73  YLDQFGKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNP 132

Query: 125 FASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHDDSTTNTCSSSSSSG 181
           FA+ ++R+YLREVRE QAKARGIPY+KKK+    + T    D       SS  S G
Sbjct: 133 FAARAVRIYLREVRESQAKARGIPYEKKKRKRPPTVTTVRVD-----VASSRQSDG 180

[Close]
BLAST of CmoCh02G000800 vs. NCBI nr
Match: gi|659094776|ref|XP_008448236.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo])

HSP 1 Score: 323.6 bits (828), Expect = 2.3e-85
Identity = 165/189 (87.30%), Postives = 173/189 (91.53%), Query Frame = 1 

Query: 7   KEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFLRYL 66
           KEYGEGSS+SPP T TTPSRYESQKRRDWNTFGQYLKNQRPPVAL+QCNFNHVLEFLRYL
Sbjct: 13  KEYGEGSSNSPP-TATTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLRYL 72

Query: 67  DQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSPETNPFA 126
           DQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEE+GGSPETNPFA
Sbjct: 73  DQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPFA 132

Query: 127 SASIRVYLREVRECQAKARGIPYKKKKKSSK----ASNTNTNH----DDSTTNTCSSSSS 186
           SASIRVYLREVRECQAKARGIPYKKKKKS+K     +N NTN+    D +TTN  SSSSS
Sbjct: 133 SASIRVYLREVRECQAKARGIPYKKKKKSNKQQQPTNNNNTNNLLIDDSTTTNNISSSSS 192

Query: 187 SGMMHFSTP 188
           S +MHFSTP
Sbjct: 193 SSIMHFSTP 200

[Close]
BLAST of CmoCh02G000800 vs. NCBI nr
Match: gi|778714159|ref|XP_004150559.2| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis sativus])

HSP 1 Score: 306.2 bits (783), Expect = 3.9e-80
Identity = 158/194 (81.44%), Postives = 169/194 (87.11%), Query Frame = 1 

Query: 7   KEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFLRYL 66
           KEYGEGSS SPP   TTPSRYESQKRRDWNTFGQYLKNQRP VAL+QCNFNHVLEFLRYL
Sbjct: 13  KEYGEGSSKSPP-RATTPSRYESQKRRDWNTFGQYLKNQRPAVALSQCNFNHVLEFLRYL 72

Query: 67  DQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSPETNPFA 126
           DQFGKTKVHVQGCMFYG PEPP+PCTCPLKQAWGSLDALIGRLRAAYEE+GGSPETNPFA
Sbjct: 73  DQFGKTKVHVQGCMFYGHPEPPSPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPFA 132

Query: 127 SASIRVYLREVRECQAKARGIPYKKKKKSSKAS----NTNTN----HDDSTTN-----TC 186
           +ASIR+YLR+VRECQAKARGIPYKKKKK++K      N NTN    HD +TTN     + 
Sbjct: 133 TASIRLYLRQVRECQAKARGIPYKKKKKTNKQQQPTINNNTNNLLIHDSTTTNNISSSSS 192

Query: 187 SSSSSSGMMHFSTP 188
           SSSSSS +MHFSTP
Sbjct: 193 SSSSSSSIMHFSTP 205

[Close]
BLAST of CmoCh02G000800 vs. NCBI nr
Match: gi|1009128447|ref|XP_015881235.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Ziziphus jujuba])

HSP 1 Score: 282.7 bits (722), Expect = 4.6e-73
Identity = 140/181 (77.35%), Postives = 156/181 (86.19%), Query Frame = 1 

Query: 1   MSSERGKEYGEGSSSSPP-----------TTTTTPSRYESQKRRDWNTFGQYLKNQRPPV 60
           MSSERGK++ EGSSSSP            +++ TPSRYESQKRRDWNTFGQYLKNQRPPV
Sbjct: 1   MSSERGKDFAEGSSSSPTDHHHQQQNQQSSSSATPSRYESQKRRDWNTFGQYLKNQRPPV 60

Query: 61  ALAQCNFNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRL 120
            L+QCN NHVL+FLRYLDQFGKTKVH+QGCMF+GQPEPPAPCTCPL+QAWGSLDALIGRL
Sbjct: 61  PLSQCNCNHVLDFLRYLDQFGKTKVHLQGCMFFGQPEPPAPCTCPLRQAWGSLDALIGRL 120

Query: 121 RAAYEEHGGSPETNPFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHDDST 171
           RAAYEE+GGSPETNPFAS +IRVYLREVRECQAKARGIPYKKKKK  K + +  N + S+
Sbjct: 121 RAAYEENGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKK--KTNQSKGNDESSS 179

[Close]
BLAST of CmoCh02G000800 vs. NCBI nr
Match: gi|658014892|ref|XP_008342774.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Malus domestica])

HSP 1 Score: 282.7 bits (722), Expect = 4.6e-73
Identity = 144/190 (75.79%), Postives = 158/190 (83.16%), Query Frame = 1 

Query: 1   MSSERGKEYGEGSSS--SP---PTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCN 60
           MS ERGK++ EGSS+  SP        TPSRYESQKRRDWNTFGQYLKNQRPPVAL+QCN
Sbjct: 5   MSRERGKDFVEGSSAGGSPNDDQQQPATPSRYESQKRRDWNTFGQYLKNQRPPVALSQCN 64

Query: 61  FNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEE 120
           +NHVLEFLRYLDQFGKTKVH+QGCMFYGQPEPPAPCTCPL+QAWGSLDALIGRLRAAYEE
Sbjct: 65  YNHVLEFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE 124

Query: 121 HGGSPETNPFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHDDSTTNTCSS 180
           +GGSPE NPFAS +IRVYLREVRECQAKARGIPYKKKKK    S  +  +DD +++T   
Sbjct: 125 NGGSPENNPFASGAIRVYLREVRECQAKARGIPYKKKKKKPSPSKGSGGNDDESSST--- 184

Query: 181 SSSSGMMHFS 186
                 MHFS
Sbjct: 185 ------MHFS 185

[Close]
BLAST of CmoCh02G000800 vs. NCBI nr
Match: gi|703129555|ref|XP_010104392.1| (hypothetical protein L484_010344 [Morus notabilis])

HSP 1 Score: 282.0 bits (720), Expect = 7.8e-73
Identity = 137/170 (80.59%), Postives = 148/170 (87.06%), Query Frame = 1 

Query: 1   MSSERGKEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVL 60
           MS +RGK + EGS S  PT  T PSRYESQKRRDWNTFGQYLKNQRPPV L+QCN NHVL
Sbjct: 1   MSIDRGKGFAEGSGSDQPTPAT-PSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNHVL 60

Query: 61  EFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSP 120
           +FLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPL+QAWGSLDALIGRLRAAYEE+GG P
Sbjct: 61  DFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGFP 120

Query: 121 ETNPFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHDDSTT 171
           ETNPFAS +IRVYLREVRECQAKARGIPYKKKKK         +HD+S++
Sbjct: 121 ETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKPDQITKGNDHDESSS 169

The following BLAST results are available for this feature:
BLAST of CmoCh02G000800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LSH10_ARATH9.6e-7176.00Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana GN=LSH10 PE=... [more]
LSH9_ARATH3.8e-5976.98Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 OS=Arabidopsis thaliana GN=LSH9 PE=1 ... [more]
G1L8_ORYSJ9.3e-5876.92Protein G1-like8 OS=Oryza sativa subsp. japonica GN=G1L8 PE=1 SV=1[more]
LSH7_ARATH1.6e-5762.63Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana GN=LSH7 PE=1 ... [more]
G1L8_ORYSI2.1e-5776.15Protein G1-like8 OS=Oryza sativa subsp. indica GN=OsI_20303 PE=3 SV=1[more]
BLAST of CmoCh02G000800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFP9_CUCSA2.7e-8081.44Uncharacterized protein OS=Cucumis sativus GN=Csa_6G236080 PE=4 SV=1[more]
M5WSR1_PRUPE5.5e-7375.26Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012217mg PE=4 SV=1[more]
W9RWI7_9ROSA5.5e-7380.59Uncharacterized protein OS=Morus notabilis GN=L484_010344 PE=4 SV=1[more]
A5C9K6_VITVI1.6e-7284.08Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034969 PE=4 SV=1[more]
F6H4Z7_VITVI2.7e-7281.60Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02160 PE=4 SV=... [more]
BLAST of CmoCh02G000800 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G42610.15.4e-7276.00 Protein of unknown function (DUF640)[more]
AT4G18610.12.1e-6076.98 Protein of unknown function (DUF640)[more]
AT1G78815.18.9e-5962.63 Protein of unknown function (DUF640)[more]
AT3G23290.21.5e-5872.54 Protein of unknown function (DUF640)[more]
AT1G07090.13.4e-5863.07 Protein of unknown function (DUF640)[more]
BLAST of CmoCh02G000800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659094776|ref|XP_008448236.1|2.3e-8587.30PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo][more]
gi|778714159|ref|XP_004150559.2|3.9e-8081.44PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis sativus][more]
gi|1009128447|ref|XP_015881235.1|4.6e-7377.35PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Ziziphus jujuba][more]
gi|658014892|ref|XP_008342774.1|4.6e-7375.79PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Malus domestica][more]
gi|703129555|ref|XP_010104392.1|7.8e-7380.59hypothetical protein L484_010344 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006936ALOG_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G000800.1CmoCh02G000800.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006936ALOG domainPFAMPF04852DUF640coord: 20..139
score: 1.5
IPR006936ALOG domainPROFILEPS51697ALOGcoord: 26..153
score: 79
NoneNo IPR availablePANTHERPTHR31165FAMILY NOT NAMEDcoord: 13..168
score: 8.3E
NoneNo IPR availablePANTHERPTHR31165:SF10PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATEDcoord: 13..168
score: 8.3E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G000800CmaCh19G010240Cucurbita maxima (Rimu)cmacmoB526
CmoCh02G000800CmaCh20G002170Cucurbita maxima (Rimu)cmacmoB560
CmoCh02G000800CmaCh02G000820Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G000800Cla013541Watermelon (97103) v1cmowmB582
CmoCh02G000800MELO3C013570Melon (DHL92) v3.5.1cmomeB529
CmoCh02G000800ClCG02G017830Watermelon (Charleston Gray)cmowcgB533
CmoCh02G000800Lsi10G015910Bottle gourd (USVL1VR-Ls)cmolsiB526
CmoCh02G000800Cp4.1LG05g15160Cucurbita pepo (Zucchini)cmocpeB595
CmoCh02G000800Cp4.1LG15g08330Cucurbita pepo (Zucchini)cmocpeB567
CmoCh02G000800Cp4.1LG16g07670Cucurbita pepo (Zucchini)cmocpeB570
CmoCh02G000800MELO3C013570.2Melon (DHL92) v3.6.1cmomedB608
CmoCh02G000800CsaV3_7G005680Cucumber (Chinese Long) v3cmocucB0754
CmoCh02G000800Cla97C02G043610Watermelon (97103) v2cmowmbB597
CmoCh02G000800Bhi10G000831Wax gourdcmowgoB0737
CmoCh02G000800Carg13602Silver-seed gourdcarcmoB0044
CmoCh02G000800Carg18468Silver-seed gourdcarcmoB0561
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh02G000800CmoCh19G010580Cucurbita moschata (Rifu)cmocmoB390
CmoCh02G000800CmoCh20G002360Cucurbita moschata (Rifu)cmocmoB411
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G000800Cucumber (Gy14) v2cgybcmoB801
CmoCh02G000800Silver-seed gourdcarcmoB0725
CmoCh02G000800Cucumber (Chinese Long) v3cmocucB0743
CmoCh02G000800Watermelon (97103) v2cmowmbB603
CmoCh02G000800Cucurbita moschata (Rifu)cmocmoB121
CmoCh02G000800Cucumber (Gy14) v1cgycmoB1067
CmoCh02G000800Cucurbita maxima (Rimu)cmacmoB154
CmoCh02G000800Wild cucumber (PI 183967)cmocpiB630
CmoCh02G000800Wild cucumber (PI 183967)cmocpiB640
CmoCh02G000800Cucumber (Chinese Long) v2cmocuB623
CmoCh02G000800Watermelon (Charleston Gray)cmowcgB539
CmoCh02G000800Watermelon (97103) v1cmowmB586
CmoCh02G000800Cucurbita pepo (Zucchini)cmocpeB592