Carg18468 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18468
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	Cucurbita_argyrosperma_scaffold_161 : 426203 .. 426676 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGTGGCGGAGGATCAAGCAAAGAATATAGAGAAGGATCGTCGAGCTCGGCTCCAACGACCCCAAGTCGATACGAGTCACAGAAACGGCGAGATTGGAACACTTACGGTCAGTACTTGAACAATCAAAGGCCTCCAGTGGCAGTGTCCCAGAGCAACTTCAACCATGTGTTGGAGTTCCTAAGGTACTTGGATCAATTTGGGAAGACAAAAGTTCATGTAGAAGGCTGCATGTTTTATGGGGAGGCAGAGCCGGCAGGCCCTTGTGGCTGTCCGCTGAAGCAAGCTTGGGGCAGCCTTGACGCTCTGATAGGGCGGTTGAGAGCTGCTTATGAAGAGCATGGAGGGTCCCCTGAGAGTAACCCTTTTGCAAGCGCTTCTATAAGGGTTTATCTTAGAGAAGTTAGGGAGTGTCAAGCCAAAGCTAGAGGAATCCCATATAAAAAGAAGAAGAAGAAGACCAACCAATAA

mRNA sequence

ATGTCAGGTGGCGGAGGATCAAGCAAAGAATATAGAGAAGGATCGTCGAGCTCGGCTCCAACGACCCCAAGTCGATACGAGTCACAGAAACGGCGAGATTGGAACACTTACGGTCAGTACTTGAACAATCAAAGGCCTCCAGTGGCAGTGTCCCAGAGCAACTTCAACCATGTGTTGGAGTTCCTAAGGTACTTGGATCAATTTGGGAAGACAAAAGTTCATGTAGAAGGCTGCATGTTTTATGGGGAGGCAGAGCCGGCAGGCCCTTGTGGCTGTCCGCTGAAGCAAGCTTGGGGCAGCCTTGACGCTCTGATAGGGCGGTTGAGAGCTGCTTATGAAGAGCATGGAGGGTCCCCTGAGAGTAACCCTTTTGCAAGCGCTTCTATAAGGGTTTATCTTAGAGAAGTTAGGGAGTGTCAAGCCAAAGCTAGAGGAATCCCATATAAAAAGAAGAAGAAGAAGACCAACCAATAA

Coding sequence (CDS)

ATGTCAGGTGGCGGAGGATCAAGCAAAGAATATAGAGAAGGATCGTCGAGCTCGGCTCCAACGACCCCAAGTCGATACGAGTCACAGAAACGGCGAGATTGGAACACTTACGGTCAGTACTTGAACAATCAAAGGCCTCCAGTGGCAGTGTCCCAGAGCAACTTCAACCATGTGTTGGAGTTCCTAAGGTACTTGGATCAATTTGGGAAGACAAAAGTTCATGTAGAAGGCTGCATGTTTTATGGGGAGGCAGAGCCGGCAGGCCCTTGTGGCTGTCCGCTGAAGCAAGCTTGGGGCAGCCTTGACGCTCTGATAGGGCGGTTGAGAGCTGCTTATGAAGAGCATGGAGGGTCCCCTGAGAGTAACCCTTTTGCAAGCGCTTCTATAAGGGTTTATCTTAGAGAAGTTAGGGAGTGTCAAGCCAAAGCTAGAGGAATCCCATATAAAAAGAAGAAGAAGAAGACCAACCAATAA

Protein sequence

MSGGGGSSKEYREGSSSSAPTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREVRECQAKARGIPYKKKKKKTNQ

Homology

[Close]

BLAST of Carg18468 vs. NCBI nr
Match: XP_022944662.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata] >XP_022986042.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima] >XP_023512487.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 291.6 bits (745), Expect = 1.6e-75
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 20  PTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCM 79
           PTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCM
Sbjct: 20  PTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCM 79

Query: 80  FYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREVREC 139
           FYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREVREC
Sbjct: 80  FYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREVREC 139

Query: 140 QAKARGIPYKKKKKKTNQ 158
           QAKARGIPYKKKKKKTNQ
Sbjct: 140 QAKARGIPYKKKKKKTNQ 157

[Close]

BLAST of Carg18468 vs. NCBI nr
Match: EOX92850.1 (Pleckstrin domain-containing family N member 1 [Theobroma cacao])

HSP 1 Score: 253.8 bits (647), Expect = 3.7e-64
Identity = 117/138 (84.78%), Postives = 127/138 (92.03%), Query Frame = 0


Query: 20  PTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCM 79
           P TPSRYESQKRRDWNT+GQYL NQRPPV +SQ N NHVL+FLRYLDQFGKTKVH++GCM
Sbjct: 61  PATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNHVLDFLRYLDQFGKTKVHLQGCM 120

Query: 80  FYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREVREC 139
           FYG+ EP  PC CPL+QAWGSLDALIGRLRAAYEE+GGSPE+NPFAS +IRVYLREVREC
Sbjct: 121 FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVREC 180

Query: 140 QAKARGIPYKKKKKKTNQ 158
           QAKARGIPYKKKKKK NQ
Sbjct: 181 QAKARGIPYKKKKKKPNQ 198

[Close]

BLAST of Carg18468 vs. NCBI nr
Match: XP_007048693.2 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Theobroma cacao])

HSP 1 Score: 253.8 bits (647), Expect = 3.7e-64
Identity = 117/138 (84.78%), Postives = 127/138 (92.03%), Query Frame = 0


Query: 20  PTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCM 79
           P TPSRYESQKRRDWNT+GQYL NQRPPV +SQ N NHVL+FLRYLDQFGKTKVH++GCM
Sbjct: 71  PATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNHVLDFLRYLDQFGKTKVHLQGCM 130

Query: 80  FYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREVREC 139
           FYG+ EP  PC CPL+QAWGSLDALIGRLRAAYEE+GGSPE+NPFAS +IRVYLREVREC
Sbjct: 131 FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVREC 190

Query: 140 QAKARGIPYKKKKKKTNQ 158
           QAKARGIPYKKKKKK NQ
Sbjct: 191 QAKARGIPYKKKKKKPNQ 208

[Close]

BLAST of Carg18468 vs. NCBI nr
Match: XP_008448236.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo] >XP_016900524.1 PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo])

HSP 1 Score: 253.4 bits (646), Expect = 4.9e-64
Identity = 117/129 (90.70%), Postives = 123/129 (95.35%), Query Frame = 0


Query: 21  TTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCMF 80
           TTPSRYESQKRRDWNT+GQYL NQRPPVA+SQ NFNHVLEFLRYLDQFGKTKVHV+GCMF
Sbjct: 27  TTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLRYLDQFGKTKVHVQGCMF 86

Query: 81  YGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREVRECQ 140
           YG+ EP  PC CPLKQAWGSLDALIGRLRAAYEE+GGSPE+NPFASASIRVYLREVRECQ
Sbjct: 87  YGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPFASASIRVYLREVRECQ 146

Query: 141 AKARGIPYK 150
           AKARGIPYK
Sbjct: 147 AKARGIPYK 155

[Close]

BLAST of Carg18468 vs. NCBI nr
Match: XP_012470246.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Gossypium raimondii] >XP_012470247.1 PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Gossypium raimondii] >XP_016671555.1 PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Gossypium hirsutum] >XP_016671563.1 PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Gossypium hirsutum] >XP_016697715.1 PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Gossypium hirsutum] >XP_016697716.1 PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Gossypium hirsutum] >XP_017621166.1 PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Gossypium arboreum] >KHG07235.1 Putative beta-lactamase-like 1 [Gossypium arboreum] >KJB18731.1 hypothetical protein B456_003G067700 [Gossypium raimondii] >KJB18732.1 hypothetical protein B456_003G067700 [Gossypium raimondii])

HSP 1 Score: 251.5 bits (641), Expect = 1.9e-63
Identity = 116/138 (84.06%), Postives = 127/138 (92.03%), Query Frame = 0


Query: 20  PTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCM 79
           P TPSRYESQKRRDWNT+GQYL NQRPPV +SQ N NHVL+FLRYLDQFGKTKVH++GCM
Sbjct: 24  PPTPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNHVLDFLRYLDQFGKTKVHLQGCM 83

Query: 80  FYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREVREC 139
           FYG+ EP  PC CPL+QAWGSLDALIGRLRAAYEE+GGSPE+NPFAS +IRVYLREVREC
Sbjct: 84  FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVREC 143

Query: 140 QAKARGIPYKKKKKKTNQ 158
           QAKARGIPYKKKKKK +Q
Sbjct: 144 QAKARGIPYKKKKKKPHQ 161

[Close]

BLAST of Carg18468 vs. TAIR10
Match: AT2G42610.1 (Protein of unknown function (DUF640))

HSP 1 Score: 237.3 bits (604), Expect = 6.6e-63
Identity = 108/130 (83.08%), Postives = 117/130 (90.00%), Query Frame = 0


Query: 20  PTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCM 79
           P TPSRYESQKRRDWNT+GQYL NQRPPV +S  + NHVL+FLRYLDQFGKTKVHV GCM
Sbjct: 20  PVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCM 79

Query: 80  FYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREVREC 139
           FYG+ EP  PC CPL+QAWGSLDALIGRLRAAYEE+GG PE+NPFAS +IRVYLREVREC
Sbjct: 80  FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVREC 139

Query: 140 QAKARGIPYK 150
           QAKARGIPYK
Sbjct: 140 QAKARGIPYK 149

[Close]

BLAST of Carg18468 vs. TAIR10
Match: AT1G07090.1 (Protein of unknown function (DUF640))

HSP 1 Score: 217.6 bits (553), Expect = 5.4e-57
Identity = 98/135 (72.59%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 20  PTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCM 79
           P TPSRYESQKRRDWNT+ QYL N +PP+A+S+ +  HV+EFL+YLDQFGKTKVHV  C 
Sbjct: 26  PATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACP 85

Query: 80  FYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREVREC 139
           ++G  +P  PC CPLKQAWGSLDALIGRLRAAYEE+GG P+SNPFA+ ++R+YLREVRE 
Sbjct: 86  YFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRES 145

Query: 140 QAKARGIPYKKKKKK 155
           QAKARGIPY+KKK+K
Sbjct: 146 QAKARGIPYEKKKRK 160

[Close]

BLAST of Carg18468 vs. TAIR10
Match: AT1G78815.1 (Protein of unknown function (DUF640))

HSP 1 Score: 214.9 bits (546), Expect = 3.5e-56
Identity = 96/127 (75.59%), Postives = 111/127 (87.40%), Query Frame = 0


Query: 24  SRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCMFYGE 83
           SRYESQKRRDWNT+ QYL NQ+PPV +SQ   NH+L+FL+YLDQFGKTKVH+ GC+F+G+
Sbjct: 39  SRYESQKRRDWNTFCQYLRNQQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQ 98

Query: 84  AEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREVRECQAKA 143
            EPAG C CPLKQAWGSLDALIGRLRAA+EE+GG PE NPFA   IRV+LREVR+ QAKA
Sbjct: 99  VEPAGQCNCPLKQAWGSLDALIGRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKA 158

Query: 144 RGIPYKK 151
           RG+PYKK
Sbjct: 159 RGVPYKK 165

[Close]

BLAST of Carg18468 vs. TAIR10
Match: AT4G18610.1 (Protein of unknown function (DUF640))

HSP 1 Score: 210.3 bits (534), Expect = 8.6e-55
Identity = 97/128 (75.78%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 24  SRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCMFYGE 83
           SRYESQKRRDWNT+ QYL +Q PP+ +SQ ++ HVL FLRYLDQFGKTKVH + C+F+G+
Sbjct: 36  SRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHHQACVFFGQ 95

Query: 84  AEPAGPCGCPLKQAWGSLDALIGRLRAAYEEH-GGSPESNPFASASIRVYLREVRECQAK 143
            +P GPC CPLKQAWGSLDALIGRLRAAYEEH GGSP++NPFA+ SIRV+LREVRE QAK
Sbjct: 96  PDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLREVRESQAK 155

Query: 144 ARGIPYKK 151
           ARGIPY+K
Sbjct: 156 ARGIPYRK 163

[Close]

BLAST of Carg18468 vs. TAIR10
Match: AT3G23290.2 (Protein of unknown function (DUF640))

HSP 1 Score: 199.5 bits (506), Expect = 1.5e-51
Identity = 89/126 (70.63%), Postives = 107/126 (84.92%), Query Frame = 0


Query: 24  SRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCMFYGE 83
           SRYE+QKRRDWNT+GQYL N RPP+++S+ +  HVLEFLRYLDQFGKTKVH   C F+G 
Sbjct: 47  SRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGH 106

Query: 84  AEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREVRECQAKA 143
             P  PC CPL+QAWGSLDALIGRLRAA+EE+GGSPE+NPF + ++R+YLREVR+ QAKA
Sbjct: 107 PNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKA 166

Query: 144 RGIPYK 150
           RGI Y+
Sbjct: 167 RGISYE 172

[Close]

BLAST of Carg18468 vs. Swiss-Prot
Match: sp|Q9S7R3|LSH10_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.2e-61
Identity = 108/130 (83.08%), Postives = 117/130 (90.00%), Query Frame = 0


Query: 20  PTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCM 79
           P TPSRYESQKRRDWNT+GQYL NQRPPV +S  + NHVL+FLRYLDQFGKTKVHV GCM
Sbjct: 20  PVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCM 79

Query: 80  FYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREVREC 139
           FYG+ EP  PC CPL+QAWGSLDALIGRLRAAYEE+GG PE+NPFAS +IRVYLREVREC
Sbjct: 80  FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVREC 139

Query: 140 QAKARGIPYK 150
           QAKARGIPYK
Sbjct: 140 QAKARGIPYK 149

[Close]

BLAST of Carg18468 vs. Swiss-Prot
Match: sp|Q9LMK2|LSH6_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LSH6 PE=1 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 9.7e-56
Identity = 98/135 (72.59%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 20  PTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCM 79
           P TPSRYESQKRRDWNT+ QYL N +PP+A+S+ +  HV+EFL+YLDQFGKTKVHV  C 
Sbjct: 26  PATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACP 85

Query: 80  FYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREVREC 139
           ++G  +P  PC CPLKQAWGSLDALIGRLRAAYEE+GG P+SNPFA+ ++R+YLREVRE 
Sbjct: 86  YFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRES 145

Query: 140 QAKARGIPYKKKKKK 155
           QAKARGIPY+KKK+K
Sbjct: 146 QAKARGIPYEKKKRK 160

[Close]

BLAST of Carg18468 vs. Swiss-Prot
Match: sp|Q9ZVA0|LSH7_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LSH7 PE=1 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 6.3e-55
Identity = 96/127 (75.59%), Postives = 111/127 (87.40%), Query Frame = 0


Query: 24  SRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCMFYGE 83
           SRYESQKRRDWNT+ QYL NQ+PPV +SQ   NH+L+FL+YLDQFGKTKVH+ GC+F+G+
Sbjct: 39  SRYESQKRRDWNTFCQYLRNQQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQ 98

Query: 84  AEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREVRECQAKA 143
            EPAG C CPLKQAWGSLDALIGRLRAA+EE+GG PE NPFA   IRV+LREVR+ QAKA
Sbjct: 99  VEPAGQCNCPLKQAWGSLDALIGRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKA 158

Query: 144 RGIPYKK 151
           RG+PYKK
Sbjct: 159 RGVPYKK 165

[Close]

BLAST of Carg18468 vs. Swiss-Prot
Match: sp|A2XED8|G1L7_ORYSI (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 9.1e-54
Identity = 95/131 (72.52%), Postives = 111/131 (84.73%), Query Frame = 0


Query: 20  PTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCM 79
           P   SRYESQKRRDWNT+ QYL N RPP+ +++ +  HV+EFLRYLDQFGKTKVH  GC 
Sbjct: 26  PAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKVHASGCA 85

Query: 80  FYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREVREC 139
           FYG+  P GPC CPL+QAWGSLDALIGRLRAAYEE GG+PESNPFA+ ++R+YLREVR+ 
Sbjct: 86  FYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYLREVRDS 145

Query: 140 QAKARGIPYKK 151
           QAKARGIPY+K
Sbjct: 146 QAKARGIPYEK 156

[Close]

BLAST of Carg18468 vs. Swiss-Prot
Match: sp|Q941W1|G1L7_ORYSJ (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 9.1e-54
Identity = 95/131 (72.52%), Postives = 111/131 (84.73%), Query Frame = 0


Query: 20  PTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCM 79
           P   SRYESQKRRDWNT+ QYL N RPP+ +++ +  HV+EFLRYLDQFGKTKVH  GC 
Sbjct: 26  PAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKVHASGCA 85

Query: 80  FYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREVREC 139
           FYG+  P GPC CPL+QAWGSLDALIGRLRAAYEE GG+PESNPFA+ ++R+YLREVR+ 
Sbjct: 86  FYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYLREVRDS 145

Query: 140 QAKARGIPYKK 151
           QAKARGIPY+K
Sbjct: 146 QAKARGIPYEK 156

[Close]

BLAST of Carg18468 vs. TrEMBL
Match: tr|A0A061DJQ9|A0A061DJQ9_THECC (Pleckstrin domain-containing family N member 1 OS=Theobroma cacao OX=3641 GN=TCM_001710 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 2.5e-64
Identity = 117/138 (84.78%), Postives = 127/138 (92.03%), Query Frame = 0


Query: 20  PTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCM 79
           P TPSRYESQKRRDWNT+GQYL NQRPPV +SQ N NHVL+FLRYLDQFGKTKVH++GCM
Sbjct: 61  PATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNHVLDFLRYLDQFGKTKVHLQGCM 120

Query: 80  FYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREVREC 139
           FYG+ EP  PC CPL+QAWGSLDALIGRLRAAYEE+GGSPE+NPFAS +IRVYLREVREC
Sbjct: 121 FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVREC 180

Query: 140 QAKARGIPYKKKKKKTNQ 158
           QAKARGIPYKKKKKK NQ
Sbjct: 181 QAKARGIPYKKKKKKPNQ 198

[Close]

BLAST of Carg18468 vs. TrEMBL
Match: tr|A0A1S4DX19|A0A1S4DX19_CUCME (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC103490491 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 3.2e-64
Identity = 117/129 (90.70%), Postives = 123/129 (95.35%), Query Frame = 0


Query: 21  TTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCMF 80
           TTPSRYESQKRRDWNT+GQYL NQRPPVA+SQ NFNHVLEFLRYLDQFGKTKVHV+GCMF
Sbjct: 27  TTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLRYLDQFGKTKVHVQGCMF 86

Query: 81  YGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREVRECQ 140
           YG+ EP  PC CPLKQAWGSLDALIGRLRAAYEE+GGSPE+NPFASASIRVYLREVRECQ
Sbjct: 87  YGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPFASASIRVYLREVRECQ 146

Query: 141 AKARGIPYK 150
           AKARGIPYK
Sbjct: 147 AKARGIPYK 155

[Close]

BLAST of Carg18468 vs. TrEMBL
Match: tr|A0A1U8K5C4|A0A1U8K5C4_GOSHI (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Gossypium hirsutum OX=3635 GN=LOC107913592 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.2e-63
Identity = 116/138 (84.06%), Postives = 127/138 (92.03%), Query Frame = 0


Query: 20  PTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCM 79
           P TPSRYESQKRRDWNT+GQYL NQRPPV +SQ N NHVL+FLRYLDQFGKTKVH++GCM
Sbjct: 24  PPTPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNHVLDFLRYLDQFGKTKVHLQGCM 83

Query: 80  FYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREVREC 139
           FYG+ EP  PC CPL+QAWGSLDALIGRLRAAYEE+GGSPE+NPFAS +IRVYLREVREC
Sbjct: 84  FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVREC 143

Query: 140 QAKARGIPYKKKKKKTNQ 158
           QAKARGIPYKKKKKK +Q
Sbjct: 144 QAKARGIPYKKKKKKPHQ 161

[Close]

BLAST of Carg18468 vs. TrEMBL
Match: tr|A0A0D2QP70|A0A0D2QP70_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G067700 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.2e-63
Identity = 116/138 (84.06%), Postives = 127/138 (92.03%), Query Frame = 0


Query: 20  PTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCM 79
           P TPSRYESQKRRDWNT+GQYL NQRPPV +SQ N NHVL+FLRYLDQFGKTKVH++GCM
Sbjct: 24  PPTPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNHVLDFLRYLDQFGKTKVHLQGCM 83

Query: 80  FYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREVREC 139
           FYG+ EP  PC CPL+QAWGSLDALIGRLRAAYEE+GGSPE+NPFAS +IRVYLREVREC
Sbjct: 84  FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVREC 143

Query: 140 QAKARGIPYKKKKKKTNQ 158
           QAKARGIPYKKKKKK +Q
Sbjct: 144 QAKARGIPYKKKKKKPHQ 161

[Close]

BLAST of Carg18468 vs. TrEMBL
Match: tr|A0A0B0N2J1|A0A0B0N2J1_GOSAR (Putative beta-lactamase-like 1 OS=Gossypium arboreum OX=29729 GN=F383_34651 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.2e-63
Identity = 116/138 (84.06%), Postives = 127/138 (92.03%), Query Frame = 0


Query: 20  PTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCM 79
           P TPSRYESQKRRDWNT+GQYL NQRPPV +SQ N NHVL+FLRYLDQFGKTKVH++GCM
Sbjct: 24  PPTPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNHVLDFLRYLDQFGKTKVHLQGCM 83

Query: 80  FYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREVREC 139
           FYG+ EP  PC CPL+QAWGSLDALIGRLRAAYEE+GGSPE+NPFAS +IRVYLREVREC
Sbjct: 84  FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVREC 143

Query: 140 QAKARGIPYKKKKKKTNQ 158
           QAKARGIPYKKKKKK +Q
Sbjct: 144 QAKARGIPYKKKKKKPHQ 161

The following BLAST results are available for this feature:

BLAST of Carg18468 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944662.1	1.6e-75	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata] >XP_022986...	[more]
EOX92850.1	3.7e-64	84.78	Pleckstrin domain-containing family N member 1 [Theobroma cacao]	[more]
XP_007048693.2	3.7e-64	84.78	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Theobroma cacao]	[more]
XP_008448236.1	4.9e-64	90.70	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo] >XP_0...	[more]
XP_012470246.1	1.9e-63	84.06	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Gossypium raimondii...	[more]

BLAST of Carg18468 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42610.1	6.6e-63	83.08	Protein of unknown function (DUF640)	[more]
AT1G07090.1	5.4e-57	72.59	Protein of unknown function (DUF640)	[more]
AT1G78815.1	3.5e-56	75.59	Protein of unknown function (DUF640)	[more]
AT4G18610.1	8.6e-55	75.78	Protein of unknown function (DUF640)	[more]
AT3G23290.2	1.5e-51	70.63	Protein of unknown function (DUF640)	[more]

BLAST of Carg18468 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9S7R3\|LSH10_ARATH	1.2e-61	83.08	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
sp\|Q9LMK2\|LSH6_ARATH	9.7e-56	72.59	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|Q9ZVA0\|LSH7_ARATH	6.3e-55	75.59	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|A2XED8\|G1L7_ORYSI	9.1e-54	72.52	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]
sp\|Q941W1\|G1L7_ORYSJ	9.1e-54	72.52	Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1	[more]

BLAST of Carg18468 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A061DJQ9\|A0A061DJQ9_THECC	2.5e-64	84.78	Pleckstrin domain-containing family N member 1 OS=Theobroma cacao OX=3641 GN=TCM...	[more]
tr\|A0A1S4DX19\|A0A1S4DX19_CUCME	3.2e-64	90.70	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A1U8K5C4\|A0A1U8K5C4_GOSHI	1.2e-63	84.06	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Gossypium hirsutum OX=3635 G...	[more]
tr\|A0A0D2QP70\|A0A0D2QP70_GOSRA	1.2e-63	84.06	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G067700 PE=4 ...	[more]
tr\|A0A0B0N2J1\|A0A0B0N2J1_GOSAR	1.2e-63	84.06	Putative beta-lactamase-like 1 OS=Gossypium arboreum OX=29729 GN=F383_34651 PE=4...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18468-RA	Carg18468-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 15..138 e-value: 2.3E-62 score: 208.7
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 25..152 score: 72.65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..25
None	No IPR available	PANTHER	PTHR31165:SF10	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10	coord: 7..155
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 7..155

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18468	Cla013541	Watermelon (97103) v1	carwmB0412
Carg18468	MELO3C013570	Melon (DHL92) v3.5.1	carmeB0420
Carg18468	CmaCh20G002170	Cucurbita maxima (Rimu)	carcmaB0575
Carg18468	CmaCh02G000820	Cucurbita maxima (Rimu)	carcmaB0577
Carg18468	CmoCh20G002360	Cucurbita moschata (Rifu)	carcmoB0559
Carg18468	CmoCh02G000800	Cucurbita moschata (Rifu)	carcmoB0561
Carg18468	Lsi10G015910	Bottle gourd (USVL1VR-Ls)	carlsiB377
Carg18468	Cp4.1LG05g15160	Cucurbita pepo (Zucchini)	carcpeB0581
Carg18468	Cp4.1LG16g07670	Cucurbita pepo (Zucchini)	carcpeB0579
Carg18468	MELO3C013570.2	Melon (DHL92) v3.6.1	carmedB0424
Carg18468	Cla97C02G043610	Watermelon (97103) v2	carwmbB0438
Carg18468	Bhi10G000831	Wax gourd	carwgoB0500

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18468	Carg13602	Silver-seed gourd	carcarB032

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18468	Cucurbita maxima (Rimu)	carcmaB0574
Carg18468	Cucurbita moschata (Rifu)	carcmoB0558
Carg18468	Watermelon (Charleston Gray)	carwcgB0408