CmoCh02G000500 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G000500
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRNA polymerase II transcription factor SIII (Elongin) subunit A
LocationCmo_Chr02 : 274032 .. 277046 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGATTGCTGGCCAATTCGTTCGTATCTAGTTCAACGATCGTGCTTCTGTTTCAACGTTTCTCGTCTCCGTCTTCTCAGACTGTCGGTAAGGTCCTTGAGATCTCAATTTCTTGATCTATCGCAGTTCGTATTGTATTTGTATTGAAATTGAATCAATTTCTTCTTTTTGTTTTCTCTTTTCTTTTAATTTCTGCTTTCTTTTTAGGACGATCGAATAGGATTTCTCTGATCATCATTTTCTTTTTATTGAATACGATCTGTTTTTTCTTGCGTTGTAATACCTACCGGATGAATTTAGGATTGGTATAAGGGAATTATTTTGTTCTATTATATTCTGACATGTTGCTTAAAGCTAAGTAAGAGATGTATAATGAATATTCAGGTGCTTCTTTTTGAAGTGTATGGAATTTAGTAATTCAGGGCCAGTTTTTGGTGAAAGAAGTGCTGATATATGAGACGCTTGATTTTTCATGTAGAGCAGTTGGTTACCTTGAGCTATATTTACCAACTTGTTTATCGACTCAGTATTTTGTTTATTGTTCAAAGGATTTGCTGTTGTGTAAATTTAGCGGTTTGTTTTCTTCTTTCTTGTTCTTAGCTTGGCAACCTGAGAAAGAAGAGATGTATCCAGTAAGAAAAGTTCCATCGTTGGTTGATCTTTGCGTTTACAAAGCTATAGATAATCTGAGGTTTCTTGGGGATGTTGGCGAAACTGATTTACATCTTCTAGAGCGGATTTTGCCACATTGCACTGTTGATCAGTTGATGCATGTGGAGAAAAGTTCAGAAGTAAGATTGGATTAATTTGCTTCTTATTTAACTATCTGGTTTCTTTGGTATATATGCTAAATTGAGCATGAATTTATTTTAGGGAAGAGATCTGACTCCAGTTACAGATAAATTGTGGAAAAAATTCTATGAAAGACAATTTGGTAGAGAAAATACCAATATTGTATCTGAGAGGATGCAGAAGAAAAAAGTGGCATTTAGATGGATTCAATTGTATGAGGTAACATTCCTTGTACTTCTTCTCTCCCGCTGTTTACTTTGAGATCTGAGTAGTGAATGATGGTCGACATGATAATGATCTATCTGAGGAATTACCATTAAAATGAAACTATCTACTTTCAGGCGAAAATGAAGGACATAGAAAAGAATGAGAGCGAAGCTGCAGATCGAATAAAGCAAAGCTACCTAAAGGAAAATGCTCGTATGTTCTATTCTATTCTATTTTCACTCGCTATAGGATTTCCTCACAATTTTAAATTTAGACTAACAAATAGCTAGATCATGTGATGTATCACGCATTATCTGGTCATTGATGCCCACTCCCATCAATTGTCTGATATTAGAGGTATGCTATAGGTTCATTATGAATAGATGTTCTTGATTTTTTACCTATATTTTAGGAATCAATAATTTTATTGTTATATCAAGTAAATATTTGTTACGGACTGCAATGGCGAAGAGAAACTACTATATAACAATAGCCTTTGGAGGGATATCTCTCTGCCAAGTCCCGCACTAGACACTTCACTAAAATGATTACACCTTCAAGATCCTTAACACTTCTATTTATTACCAAGACACCTCCTAACTAATTACCATTATGTCCTTACTAATCCCCCACGTATAACCCATAGCATACCTTACTAGTACACTCACAATATTTTCTTAACATATGATATTTTGAATATTGTCTTGAACATTTTTAGGGAAACAAAGTCGTCAAATACAGATTTGCAGTAAGGTTCCCCCTGCAAGCAATAAGAGAAGTTTTGGAGGTAAAATCTATCGCTCCTTACATTTGGCTTGGCTTCTGGGTAATAGAGATTTTAAATCTGGCAAGGCTGCGGCTGGCACCATGAAAAGAGAAATTATTAACATGTTATTTTTCTCGTGATTTTCTTAGCAGCTGGATATGGCTCCAACGTGACAAATACTAAGAACAAGCTGCTGAAGAAGTCAAAAATAGAAGTGCTTCAGAGGTAAGACTATTGAATTTGTTCTCTGGAAAAAAAAAAAAAAGAAAGAAAGAAAAGAAGGCTATTGAATTGATATCTCAGAGTGGCCAGTCTGAGAATATTGTGAATTTGTCTAATGTGCCTCAAAGAAAATTAAACATTAAATTTGATCCTTCTCCGCTTAGAATCTGATCGGCTGGTCAAAGACATTAATGAAATGGCTTTTTCTATCTATTTGAAAGCTTCTTTACTAAAATAATTCTTGAGCGGCTGCTTTTTGCATGCTTCCGAACAGAAGCAAATGGATGTTGTTCTAACTAGCCGATTTGTAATTTAATCATGGAAGCACGTATTTGTAGATCCTTTGTCACGAGCCCAACCTGACAAAATTTCTCGAAACACTAGTTCTCATTTATATACTGTACCTACCCCTCCATGCATGAAACAAAGCCCCTTTTCCATCTATGTTCAGTGAAAGTTCTCCAATACTGATTCTTTCCCTTCTTTGGACAGTCAAGAGATGAAAAATATAAAAGCCTGGCGAAGAAATGCAGTGCAGAAGACTTGTGAGTAAGTTGCATTTCTTAGCGCTATAACTCAATGATTTTGAAACCACCTGTTCACTAACTCAATGCTGACGTTCACGTTCCCCTCTAATCTGCAGTATTCCTTCCACAAAGAAGCCAATGTTTTCTGGAAGGGATTCCGCTTCAACTTCTAAGAGTACTACCACTCATATGGCCCGAAAGTGGTAGCACCTTCATTAGCTTTGCTTTGTTTTTTTTACCAATTGTAAGGATCTGTTCTTTCACTCAGCTCCAAGGCTATCTTATCTTTAATTTAGTTATTTCACATCTCCAGACACTTCTGAAAAGTCATGCCCTGTGAATAACTTTACATTTCGTAGTTGTTTTCCATTTTAATGCAATATTGTTTATTTTACACATTTTTTCTCCTTATGAACTTCGTGATGTGGTATGTTATTTTAATGACGTGATGATCAGATCTTCCAATCAAGAAGAGAATGATAGCTAATCTTGTTTTGAT

mRNA sequence

ATGACGATTGCTGGCCAATTCGTTCCTTGGCAACCTGAGAAAGAAGAGATGTATCCAGTAAGAAAAGTTCCATCGTTGGTTGATCTTTGCGTTTACAAAGCTATAGATAATCTGAGGTTTCTTGGGGATGTTGGCGAAACTGATTTACATCTTCTAGAGCGGATTTTGCCACATTGCACTGTTGATCAGTTGATGCATGTGGAGAAAAGTTCAGAAGGAAGAGATCTGACTCCAGTTACAGATAAATTGTGGAAAAAATTCTATGAAAGACAATTTGGTAGAGAAAATACCAATATTGTATCTGAGAGGATGCAGAAGAAAAAAGTGGCATTTAGATGGATTCAATTGTATGAGGCGAAAATGAAGGACATAGAAAAGAATGAGAGCGAAGCTGCAGATCGAATAAAGCAAAGCTACCTAAAGGAAAATGCTCGGAAACAAAGTCGTCAAATACAGATTTGCAGTAAGGTTCCCCCTGCAAGCAATAAGAGAAGTTTTGGAGGTAAAATCTATCGCTCCTTACATTTGGCTTGGCTTCTGGCTGGATATGGCTCCAACGTGACAAATACTAAGAACAAGCTGCTGAAGAAGTCAAAAATAGAAGTGCTTCAGAGTCAAGAGATGAAAAATATAAAAGCCTGGCGAAGAAATGCAGTGCAGAAGACTTGTGATATTCCTTCCACAAAGAAGCCAATGTTTTCTGGAAGGGATTCCGCTTCAACTTCTAAGAGTACTACCACTCATATGGCCCGAAAGTGGTAGCACCTTCATTAGCTTTGCTTTGTTTTTTTTACCAATTGTAAGGATCTGTTCTTTCACTCAGCTCCAAGGCTATCTTATCTTTAATTTAGTTATTTCACATCTCCAGACACTTCTGAAAAGTCATGCCCTGTGAATAACTTTACATTTCGTAGTTGTTTTCCATTTTAATGCAATATTGTTTATTTTACACATTTTTTCTCCTTATGAACTTCGTGATGTGGTATGTTATTTTAATGACGTGATGATCAGATCTTCCAATCAAGAAGAGAATGATAGCTAATCTTGTTTTGAT

Coding sequence (CDS)

ATGACGATTGCTGGCCAATTCGTTCCTTGGCAACCTGAGAAAGAAGAGATGTATCCAGTAAGAAAAGTTCCATCGTTGGTTGATCTTTGCGTTTACAAAGCTATAGATAATCTGAGGTTTCTTGGGGATGTTGGCGAAACTGATTTACATCTTCTAGAGCGGATTTTGCCACATTGCACTGTTGATCAGTTGATGCATGTGGAGAAAAGTTCAGAAGGAAGAGATCTGACTCCAGTTACAGATAAATTGTGGAAAAAATTCTATGAAAGACAATTTGGTAGAGAAAATACCAATATTGTATCTGAGAGGATGCAGAAGAAAAAAGTGGCATTTAGATGGATTCAATTGTATGAGGCGAAAATGAAGGACATAGAAAAGAATGAGAGCGAAGCTGCAGATCGAATAAAGCAAAGCTACCTAAAGGAAAATGCTCGGAAACAAAGTCGTCAAATACAGATTTGCAGTAAGGTTCCCCCTGCAAGCAATAAGAGAAGTTTTGGAGGTAAAATCTATCGCTCCTTACATTTGGCTTGGCTTCTGGCTGGATATGGCTCCAACGTGACAAATACTAAGAACAAGCTGCTGAAGAAGTCAAAAATAGAAGTGCTTCAGAGTCAAGAGATGAAAAATATAAAAGCCTGGCGAAGAAATGCAGTGCAGAAGACTTGTGATATTCCTTCCACAAAGAAGCCAATGTTTTCTGGAAGGGATTCCGCTTCAACTTCTAAGAGTACTACCACTCATATGGCCCGAAAGTGGTAG
Homology
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BLAST of CmoCh02G000500 vs. TrEMBL
Match: A0A0B0MEQ4_GOSAR (Elongin-A OS=Gossypium arboreum GN=F383_13223 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 3.9e-66
Identity = 136/232 (58.62%), Postives = 176/232 (75.86%), Query Frame = 1 

Query: 13  EKEEMYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSE 72
           +K EM   RK PSLVDLCV   IDN+R+LGDVGETD HLLERILPHCTVDQL+HVEKS++
Sbjct: 12  DKSEM---RKTPSLVDLCVRTVIDNVRYLGDVGETDSHLLERILPHCTVDQLLHVEKSTK 71

Query: 73  GRDLTPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAA 132
           GRDL+ VTDKLWK FYE QFGRE+  IV ERM+ KKV+FRW QLYEAK+KD+++ E++A 
Sbjct: 72  GRDLSSVTDKLWKNFYELQFGRESMKIVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAI 131

Query: 133 DRIKQSYLKENARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAGYGSNVTNTKN 192
           DR+KQ Y KE+ARKQSRQ+Q+C+KVPP+S +  F G            +G G N++N K+
Sbjct: 132 DRLKQLYKKEDARKQSRQVQLCTKVPPSSKRSFFAG------------SGPGYNMSNVKS 191

Query: 193 KLLKKSKIEVLQSQEMKNIKAWRRNAVQK-TCDIPSTKKPMFSGRDSASTSK 244
            ++KK+KI++++SQE+KN+ A ++ AVQ        TK   F G++SASTSK
Sbjct: 192 NIMKKAKIDLMKSQEVKNLAAMKKKAVQSYHSGTTITKSSGFCGKNSASTSK 228

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BLAST of CmoCh02G000500 vs. TrEMBL
Match: A0A0D2RUW6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.9e-65
Identity = 135/232 (58.19%), Postives = 175/232 (75.43%), Query Frame = 1 

Query: 13  EKEEMYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSE 72
           +K EM   RK PSLVDLCV   IDN+R+LGDVGETD HLLERILPHCTVDQL+HVE S++
Sbjct: 12  DKSEM---RKTPSLVDLCVRTVIDNVRYLGDVGETDSHLLERILPHCTVDQLLHVETSTK 71

Query: 73  GRDLTPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAA 132
           GRDL+ VTDKLWK FYE QFGRE+  IV ERM+ KKV+FRW QLYEAK+KD+++ E++A 
Sbjct: 72  GRDLSSVTDKLWKNFYELQFGRESMQIVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAI 131

Query: 133 DRIKQSYLKENARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAGYGSNVTNTKN 192
           DR+KQ Y KE+ARKQSRQ+Q+C+KVPP+S +  F G            +G G N++N K+
Sbjct: 132 DRLKQLYKKEDARKQSRQVQLCTKVPPSSKRSFFAG------------SGPGYNMSNVKS 191

Query: 193 KLLKKSKIEVLQSQEMKNIKAWRRNAVQK-TCDIPSTKKPMFSGRDSASTSK 244
            ++KK+KI++++SQE+KN+ A ++ AVQ        TK   F G++SASTSK
Sbjct: 192 NIMKKAKIDLMKSQEVKNLAAMKKKAVQSHHSGTTITKSSGFCGKNSASTSK 228

[Close]
BLAST of CmoCh02G000500 vs. TrEMBL
Match: A0A061DJY1_THECC (Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 4.3e-65
Identity = 132/229 (57.64%), Postives = 176/229 (76.86%), Query Frame = 1 

Query: 16  EMYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRD 75
           +M  VRK PSLVDLC+  AIDN+R+LGDVGETD HLLERILPHCT+DQL+HVEKS++GRD
Sbjct: 12  DMSNVRKPPSLVDLCIRTAIDNVRYLGDVGETDSHLLERILPHCTMDQLIHVEKSTKGRD 71

Query: 76  LTPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRI 135
           L+PVTDKLWK FYE QFGR +TN+V ERM+ KKV+FRW QLYEAK+KD+++ E++A DR+
Sbjct: 72  LSPVTDKLWKNFYELQFGRASTNLVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRL 131

Query: 136 KQSYLKENARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAGYGSNVTNTKNKLL 195
           KQ Y KE+ARKQSRQ+Q+C+KVPP+S +  F G            +G G N++  K+ ++
Sbjct: 132 KQLYKKEDARKQSRQVQLCTKVPPSSKRSFFAG------------SGPGYNLSYVKSNIM 191

Query: 196 KKSKIEVLQSQEMKNIKAWRRNAVQ-KTCDIPSTKKPMFSGRDSASTSK 244
           KK+KI++++SQE+KN+ A ++ AVQ        TK     G++SAS+SK
Sbjct: 192 KKAKIDLMKSQEVKNLAAMKKKAVQTHHRGTTITKSSGLCGKNSASSSK 228

[Close]
BLAST of CmoCh02G000500 vs. TrEMBL
Match: A9P8K1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05560g PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 5.7e-65
Identity = 129/224 (57.59%), Postives = 177/224 (79.02%), Query Frame = 1 

Query: 21  RKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDLTPVT 80
           RKVPSLVDLCV  A++N+++LGDVGETDLHLL+RILPHCT+DQLMH+EKS+ GRDL+ VT
Sbjct: 6   RKVPSLVDLCVSLAVENVKYLGDVGETDLHLLDRILPHCTLDQLMHIEKSTVGRDLSSVT 65

Query: 81  DKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIKQSYL 140
           DKLWK FYE+QFG  +T++V +RM++KKV+FRW+QLYEAK+KDI + E++ A RI+Q Y 
Sbjct: 66  DKLWKTFYEKQFGERSTDLVIQRMRQKKVSFRWLQLYEAKLKDIAEAENKLAARIRQLYK 125

Query: 141 KENARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAGYGSNVTNTKNKLLKKSKI 200
           KE+ RKQSRQ+++CSKVPP+SNKRSF G            +G G N++N K+ L+KK+K+
Sbjct: 126 KEDDRKQSRQVRLCSKVPPSSNKRSFCGG-----------SGPGYNLSNGKSNLMKKAKM 185

Query: 201 EVLQSQEMKNIKAWRRNAVQKTCDIPSTKKP--MFSGRDSASTS 243
           + L+S+E++NI A ++NA+Q+     S  KP   F G+ SAS++
Sbjct: 186 DFLKSREVQNIAAMKKNALQRNSSSSSMMKPPGSFPGKSSASSN 218

[Close]
BLAST of CmoCh02G000500 vs. TrEMBL
Match: M5WTF0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010897mg PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 7.4e-65
Identity = 130/230 (56.52%), Postives = 177/230 (76.96%), Query Frame = 1 

Query: 15  EEMYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGR 74
           +E +   + PSLVDLC+  AIDN+R LGDVGET+L+ LERILPHCTVDQL HVEKS++GR
Sbjct: 2   DEEFTSVEPPSLVDLCINTAIDNIRHLGDVGETELYFLERILPHCTVDQLRHVEKSTKGR 61

Query: 75  DLTPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADR 134
           DL+P+TD LW+K Y+++FG E TN+V ERM+KKKV+FRW QLYEAK+++++  E++ AD 
Sbjct: 62  DLSPITDNLWRKLYQKEFGIERTNLVIERMKKKKVSFRWNQLYEAKLREVDVAENKVADL 121

Query: 135 IKQSYLKENARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAGYGSNVTNTKNKL 194
           +K  Y KE+ARKQSRQ++IC+KVPP+SNKRSFG              G G NVT  K+ L
Sbjct: 122 LKSLYQKEDARKQSRQVRICTKVPPSSNKRSFGN-------------GPGYNVT-AKSNL 181

Query: 195 LKKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKP-MFSGRDSASTSK 244
           +KKSKI+ L+S E++N+ A ++ ++QK+  +P  K+P  FSG+DSAS+SK
Sbjct: 182 MKKSKIDFLKSHEVRNLAAMKKKSLQKSYSVPPVKRPGEFSGKDSASSSK 217

[Close]
BLAST of CmoCh02G000500 vs. TAIR10
Match: AT2G42780.1 (AT2G42780.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 185.3 bits (469), Expect = 4.8e-47
Identity = 100/225 (44.44%), Postives = 149/225 (66.22%), Query Frame = 1 

Query: 21  RKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDLTPVT 80
           +K PSLVDLCV KAIDN++++G VG  D  LLE+IL HCT++QL H+E +++  DL+P+T
Sbjct: 8   KKPPSLVDLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPIT 67

Query: 81  DKLWKKFYERQFGRENTNIVSERMQKKKV-AFRWIQLYEAKMKDIEKNESEAADRIKQSY 140
           DK WK FY++ +G E+   + E ++  KV  F+W  LYE K+  +++ E E   R+K+ Y
Sbjct: 68  DKFWKGFYKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERY 127

Query: 141 LKENARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAGYGSNVTNTKNKLLKKSK 200
             EN RKQSRQ ++CSK PP  +KR F           W  +  G N+ + K+ ++KK+K
Sbjct: 128 KDENERKQSRQTKVCSKAPP--SKRPF-----------WGNSASGYNLGHVKSNIMKKAK 187

Query: 201 IEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKS 245
           I++L+SQE+KN+ A +RN +QK+  I + KK   S  +S STS+S
Sbjct: 188 IDLLKSQEVKNLTAIKRNTIQKSFSISTPKKTGLSA-NSPSTSRS 218

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BLAST of CmoCh02G000500 vs. NCBI nr
Match: gi|659112953|ref|XP_008456387.1| (PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo])

HSP 1 Score: 389.4 bits (999), Expect = 4.7e-105
Identity = 196/237 (82.70%), Postives = 216/237 (91.14%), Query Frame = 1 

Query: 17  MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 76
           MY VRK+PSLVDLCV KAIDN+RFLGDVGETD+HLLERILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 77  TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 136
           TPVTDKLWKKFYERQFG+E+T  V ERM++K+VAFRWIQLYEAKM+DIEKNES+AADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 137 QSYLKENARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAGYGSNVTNTKNKLLK 196
           QSYLKENARKQSRQIQICSKVPP+SNKRSFGG            +GYG NV NTKNK+LK
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGG------------SGYGYNVANTKNKILK 180

Query: 197 KSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW 254
           K+KIEVLQSQEMKNIKAWRRNAVQK+ DIPSTKKPMF GR+SASTSK+T+THMA++W
Sbjct: 181 KAKIEVLQSQEMKNIKAWRRNAVQKSSDIPSTKKPMFPGRESASTSKNTSTHMAKRW 225

[Close]
BLAST of CmoCh02G000500 vs. NCBI nr
Match: gi|449450878|ref|XP_004143189.1| (PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus])

HSP 1 Score: 387.9 bits (995), Expect = 1.4e-104
Identity = 196/237 (82.70%), Postives = 216/237 (91.14%), Query Frame = 1 

Query: 17  MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 76
           MY VRK+PSLVDLCV KAIDNLRFLGDVGETD+HLL+RILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60

Query: 77  TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 136
           TPVTDKLWKKFYERQFG+E+T  V ERM++K+VAFRWIQLYEAKM+DIEKNES+AADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIK 120

Query: 137 QSYLKENARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAGYGSNVTNTKNKLLK 196
           QSYLKENARKQSRQIQICSKVPP+SNKRSFGG            +GYG NV NTKNK+LK
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGG------------SGYGYNVANTKNKILK 180

Query: 197 KSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW 254
           K+KIEVLQSQEMKNIKAWRRNAVQK+ DI STKKPMFSGR+SASTSK+T+THMA++W
Sbjct: 181 KAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW 225

[Close]
BLAST of CmoCh02G000500 vs. NCBI nr
Match: gi|694448039|ref|XP_009350012.1| (PREDICTED: transcription elongation factor B polypeptide 3-like [Pyrus x bretschneideri])

HSP 1 Score: 265.0 bits (676), Expect = 1.3e-67
Identity = 136/221 (61.54%), Postives = 174/221 (78.73%), Query Frame = 1 

Query: 24  PSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKL 83
           PSLVDLC+  AIDNLR LGDVGETD HLL+RILPHCTVDQLMH+EKS++GRDLTP+TDKL
Sbjct: 15  PSLVDLCINTAIDNLRRLGDVGETDSHLLKRILPHCTVDQLMHIEKSTKGRDLTPITDKL 74

Query: 84  WKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIKQSYLKEN 143
           WKKFYE++FG +  N V ERM++KKVAFRWIQLYEAK+K+++  E+  AD++K  Y + N
Sbjct: 75  WKKFYEKEFGTKRVNEVIERMKQKKVAFRWIQLYEAKLKEVDMAENLMADKLKSRYQEAN 134

Query: 144 ARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAGYGSNVTNTKNKLLKKSKIEVL 203
           ARKQSRQ+QIC+KVPP+SNKRS+G              G G NVT  K+ L+KK+K++ L
Sbjct: 135 ARKQSRQVQICTKVPPSSNKRSWGN-------------GPGCNVTG-KSNLMKKAKLDFL 194

Query: 204 QSQEMKNIKAWRRNAVQKTCDIPSTKKP-MFSGRDSASTSK 244
           +S E+KN+ A +RNA+QK+  +P  K+P  FSG+ SAS+SK
Sbjct: 195 KSNEVKNLAAMKRNALQKSYSVPPVKRPDAFSGKASASSSK 221

[Close]
BLAST of CmoCh02G000500 vs. NCBI nr
Match: gi|1009126773|ref|XP_015880336.1| (PREDICTED: elongin-A [Ziziphus jujuba])

HSP 1 Score: 263.5 bits (672), Expect = 3.9e-67
Identity = 137/234 (58.55%), Postives = 175/234 (74.79%), Query Frame = 1 

Query: 21  RKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDLTPVT 80
           +K PSLVDLCV  AIDN+R+LGDVGETD++LL++ILPHCT+DQLMHVEK SEGRDL+P+T
Sbjct: 10  QKAPSLVDLCVRTAIDNIRYLGDVGETDIYLLDKILPHCTLDQLMHVEKCSEGRDLSPIT 69

Query: 81  DKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIKQSYL 140
           DKLWKKFYE+ FG E+TN+V +RM  K V F+W QLYEAK+KD+   E +A DRI Q Y 
Sbjct: 70  DKLWKKFYEKDFGVESTNLVVKRMNTKGVFFKWKQLYEAKLKDVANAEKKAVDRIMQLYK 129

Query: 141 KENARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAGYGSNVTNTKNKLLKKSKI 200
           KE+ARKQSRQ+Q CSKVPP+SNKRSF G            +G G NV+N K+ L+KKS+I
Sbjct: 130 KEDARKQSRQVQFCSKVPPSSNKRSFFGG-----------SGPGYNVSNLKSNLMKKSRI 189

Query: 201 EVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPM-FSGRDSASTSKSTTTHMARKW 254
           E L+S ++KN+ A +RN++Q+       KKP+  SG+D ASTS   T    R++
Sbjct: 190 EFLKSNDVKNLAAMKRNSLQRNHSASLMKKPVTVSGKDLASTSSKHTKPAVRRF 232

[Close]
BLAST of CmoCh02G000500 vs. NCBI nr
Match: gi|657976718|ref|XP_008380250.1| (PREDICTED: transcription elongation factor B polypeptide 3-like [Malus domestica])

HSP 1 Score: 263.5 bits (672), Expect = 3.9e-67
Identity = 137/221 (61.99%), Postives = 173/221 (78.28%), Query Frame = 1 

Query: 24  PSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKL 83
           PSLVDLC+  AIDNLR LGDVGETD HLL+RILPHCTVDQLMHVEKS++GRDLTP+TDKL
Sbjct: 15  PSLVDLCINTAIDNLRRLGDVGETDSHLLKRILPHCTVDQLMHVEKSTKGRDLTPITDKL 74

Query: 84  WKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIKQSYLKEN 143
           WKKFYE++FG +  N V ERM++KKVAFRWIQLYEAK+K+++  E+  AD++K  Y + N
Sbjct: 75  WKKFYEKEFGTKRVNEVIERMKQKKVAFRWIQLYEAKLKEVDMAENLMADKLKSRYQEAN 134

Query: 144 ARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAGYGSNVTNTKNKLLKKSKIEVL 203
           ARKQSRQ+QIC+KVPP+SNKRS+G              G G NVT  K+ L+KK+K++ L
Sbjct: 135 ARKQSRQVQICTKVPPSSNKRSWGN-------------GPGYNVTG-KSNLMKKAKLDFL 194

Query: 204 QSQEMKNIKAWRRNAVQKTCDIPSTKKP-MFSGRDSASTSK 244
           +S E+KN+ A +RNA+QK+   P  K+P  FSG+ SAS+SK
Sbjct: 195 KSNEVKNLAAMKRNALQKSYSAPPVKRPDAFSGKASASSSK 221

The following BLAST results are available for this feature:
BLAST of CmoCh02G000500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh02G000500 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0B0MEQ4_GOSAR3.9e-6658.62Elongin-A OS=Gossypium arboreum GN=F383_13223 PE=4 SV=1[more]
A0A0D2RUW6_GOSRA1.9e-6558.19Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1[more]
A0A061DJY1_THECC4.3e-6557.64Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=... [more]
A9P8K1_POPTR5.7e-6557.59Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05560g PE=2 SV=1[more]
M5WTF0_PRUPE7.4e-6556.52Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010897mg PE=4 SV=1[more]
BLAST of CmoCh02G000500 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G42780.14.8e-4744.44 FUNCTIONS IN: molecular_function unknown[more]
BLAST of CmoCh02G000500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659112953|ref|XP_008456387.1|4.7e-10582.70PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo][more]
gi|449450878|ref|XP_004143189.1|1.4e-10482.70PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus][more]
gi|694448039|ref|XP_009350012.1|1.3e-6761.54PREDICTED: transcription elongation factor B polypeptide 3-like [Pyrus x bretsch... [more]
gi|1009126773|ref|XP_015880336.1|3.9e-6758.55PREDICTED: elongin-A [Ziziphus jujuba][more]
gi|657976718|ref|XP_008380250.1|3.9e-6761.99PREDICTED: transcription elongation factor B polypeptide 3-like [Malus domestica... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010684RNA_pol_II_trans_fac_SIII_A
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
biological_process GO:0006414 translational elongation
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0070449 elongin complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003746 translation elongation factor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G000500.1CmoCh02G000500.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010684RNA polymerase II transcription factor SIII, subunit APFAMPF06881Elongin_Acoord: 42..151
score: 3.8
NoneNo IPR availableunknownCoilCoilcoord: 114..134
scor
NoneNo IPR availablePANTHERPTHR15141TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3coord: 21..217
score: 8.1
NoneNo IPR availablePANTHERPTHR15141:SF53PROTEIN T23E1.3, ISOFORM Acoord: 21..217
score: 8.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G000500Cucsa.139720Cucumber (Gy14) v1cgycmoB0388
CmoCh02G000500CmaCh02G000510Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G000500Cla013501Watermelon (97103) v1cmowmB586
CmoCh02G000500Csa6G169320Cucumber (Chinese Long) v2cmocuB623
CmoCh02G000500MELO3C019712Melon (DHL92) v3.5.1cmomeB526
CmoCh02G000500ClCG02G018240Watermelon (Charleston Gray)cmowcgB539
CmoCh02G000500CSPI06G13180Wild cucumber (PI 183967)cmocpiB630
CmoCh02G000500Lsi10G015550Bottle gourd (USVL1VR-Ls)cmolsiB526
CmoCh02G000500Cp4.1LG05g15360Cucurbita pepo (Zucchini)cmocpeB595
CmoCh02G000500MELO3C019712.2Melon (DHL92) v3.6.1cmomedB616
CmoCh02G000500CsaV3_6G015620Cucumber (Chinese Long) v3cmocucB0743
CmoCh02G000500Cla97C02G044060Watermelon (97103) v2cmowmbB603
CmoCh02G000500Bhi10G000784Wax gourdcmowgoB0737
CmoCh02G000500CsGy6G013220Cucumber (Gy14) v2cgybcmoB801
CmoCh02G000500Carg13631Silver-seed gourdcarcmoB0044
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G000500Cucurbita moschata (Rifu)cmocmoB121
CmoCh02G000500Cucurbita moschata (Rifu)cmocmoB390
CmoCh02G000500Cucurbita moschata (Rifu)cmocmoB411
CmoCh02G000500Cucumber (Gy14) v1cgycmoB0535
CmoCh02G000500Cucurbita maxima (Rimu)cmacmoB154
CmoCh02G000500Cucurbita maxima (Rimu)cmacmoB526
CmoCh02G000500Cucurbita maxima (Rimu)cmacmoB560
CmoCh02G000500Wild cucumber (PI 183967)cmocpiB637
CmoCh02G000500Cucumber (Chinese Long) v2cmocuB629
CmoCh02G000500Melon (DHL92) v3.5.1cmomeB563
CmoCh02G000500Cucurbita pepo (Zucchini)cmocpeB570
CmoCh02G000500Cucurbita pepo (Zucchini)cmocpeB567
CmoCh02G000500Cucurbita pepo (Zucchini)cmocpeB592
CmoCh02G000500Bottle gourd (USVL1VR-Ls)cmolsiB543
CmoCh02G000500Cucumber (Gy14) v2cgybcmoB807
CmoCh02G000500Silver-seed gourdcarcmoB0466
CmoCh02G000500Silver-seed gourdcarcmoB0534
CmoCh02G000500Silver-seed gourdcarcmoB0725