Cla013501 (gene) Watermelon (97103) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTATCGAGTAAGAAAAATTCCATCCTTGGTTGATCTTTGTGTTAACAAAGCTATAGATAATCTAAGGTTCCTTGGGGATGTTGGCGAAACTGATATACATCTTTTAGACCGTATTTTGCCACATTGCACAGTTGACCAATTAATGCATGTGGAGAAGAGTTCAGAAGTAAGATTGGATGAATTTGCTTCTTGTTTTTAACTATCTAGTTTTATTTTAGTATATGTGCTCAATTGAGTATGGACTTCTTACAGGGAAGAGATCTGACTCCAATAACTGATAAATTGTGGAAAAAATTCTATGAAAGACAGTTTGGTAAAGAAAGTACTACTACTGTAATTGAGAGGATGCGGCAGAAAAGAGTGGCATTTAGATGGATTCAATTGTATGAGGTAGCTTTCCTTTTACTTCTCTTCGCATGCAATTGCTTTGATATTTGAGTATTGAATGACGGTTAGCATGATAATTGATTCCTCTTAGAATTGCCATAAAAAATGAAGCTATCTATTTTCAGGCGAAGATGAAGGACATTGAAAAGAATGAGAGTAAAGCTGCAGATAGAATAAAACAAAGCTACCAAAAGGAAAATGCCCGTATGTTCTATATCATATTTGCATACTCTCTAATGGATTTCCTCATAATCTTAAATTTGACTAACAATTAGCTCGAGCATGCTATGCATGTTATCTGGAAATTGTATCCACTCCCAACGTCTTATATATTAGAGGTATACTATTGGTTCATCTAAGAATAGATGTTATTGATTTTTACATGTATTTTAGGAATCGTTAGTGTTTTTGTTAAGTAGATGTTTTCTTAACATATGAGATTTTAAAGATTACCTCGAACATTTTAGGAAAACAAAGTCGTCAAATACAGATTTGCAGTAAGGTTCCCCCCTCGAGCAATAAGAGAAGCTTTGGAGGTAAACTTTATTTAATAGATTCTAACTCTGGCAAGGCTGCAGCTGACACCTTGCAAAGAAAAAAAATATTTACATTTTATTTTTTTCTCTTGATTTGTCGTAGGAACCGGATATGGCTACAATGTGGCAAACACTAAGAACAAGATACTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGGTAA ATGTATCGAGTAAGAAAAATTCCATCCTTGGTTGATCTTTGTGTTAACAAAGCTATAGATAATCTAAGGTTCCTTGGGGATGTTGGCGAAACTGATATACATCTTTTAGACCGTATTTTGCCACATTGCACAGTTGACCAATTAATGCATGTGGAGAAGAGTTCAGAAGGAAGAGATCTGACTCCAATAACTGATAAATTGTGGAAAAAATTCTATGAAAGACAGTTTGGTAAAGAAAGTACTACTACTGTAATTGAGAGGATGCGGCAGAAAAGAGTGGCATTTAGATGGATTCAATTGTATGAGGCGAAGATGAAGGACATTGAAAAGAATGAGAGTAAAGCTGCAGATAGAATAAAACAAAGCTACCAAAAGGAAAATGCCCGAAAACAAAGTCGTCAAATACAGATTTGCAGTAAGGTTCCCCCCTCGAGCAATAAGAGAAGCTTTGGAGGAACCGGATATGGCTACAATGTGGCAAACACTAAGAACAAGATACTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGGTAA ATGTATCGAGTAAGAAAAATTCCATCCTTGGTTGATCTTTGTGTTAACAAAGCTATAGATAATCTAAGGTTCCTTGGGGATGTTGGCGAAACTGATATACATCTTTTAGACCGTATTTTGCCACATTGCACAGTTGACCAATTAATGCATGTGGAGAAGAGTTCAGAAGGAAGAGATCTGACTCCAATAACTGATAAATTGTGGAAAAAATTCTATGAAAGACAGTTTGGTAAAGAAAGTACTACTACTGTAATTGAGAGGATGCGGCAGAAAAGAGTGGCATTTAGATGGATTCAATTGTATGAGGCGAAGATGAAGGACATTGAAAAGAATGAGAGTAAAGCTGCAGATAGAATAAAACAAAGCTACCAAAAGGAAAATGCCCGAAAACAAAGTCGTCAAATACAGATTTGCAGTAAGGTTCCCCCCTCGAGCAATAAGAGAAGCTTTGGAGGAACCGGATATGGCTACAATGTGGCAAACACTAAGAACAAGATACTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGGTAA MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIKQSYQKENARKQSRQIQICSKVPPSSNKRSFGGTGYGYNVANTKNKILKKAKIEVLQR
BLAST of Cla013501 vs. TrEMBL
Match: A9P8K1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05560g PE=2 SV=1) HSP 1 Score: 257.3 bits (656), Expect = 1.4e-65 Identity = 118/173 (68.21%), Postives = 155/173 (89.60%), Query Frame = 1
BLAST of Cla013501 vs. TrEMBL
Match: A0A0A0KGZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G169320 PE=4 SV=1) HSP 1 Score: 256.5 bits (654), Expect = 2.3e-65 Identity = 125/129 (96.90%), Postives = 128/129 (99.22%), Query Frame = 1
BLAST of Cla013501 vs. TrEMBL
Match: A0A061DJY1_THECC (Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=1) HSP 1 Score: 255.8 bits (652), Expect = 4.0e-65 Identity = 117/176 (66.48%), Postives = 152/176 (86.36%), Query Frame = 1
BLAST of Cla013501 vs. TrEMBL
Match: A0A0B0MEQ4_GOSAR (Elongin-A OS=Gossypium arboreum GN=F383_13223 PE=4 SV=1) HSP 1 Score: 254.2 bits (648), Expect = 1.2e-64 Identity = 116/173 (67.05%), Postives = 150/173 (86.71%), Query Frame = 1
BLAST of Cla013501 vs. TrEMBL
Match: A0A0D2NJM7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1) HSP 1 Score: 253.8 bits (647), Expect = 1.5e-64 Identity = 116/174 (66.67%), Postives = 150/174 (86.21%), Query Frame = 1
BLAST of Cla013501 vs. NCBI nr
Match: gi|449450878|ref|XP_004143189.1| (PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus]) HSP 1 Score: 349.0 bits (894), Expect = 4.9e-93 Identity = 172/176 (97.73%), Postives = 175/176 (99.43%), Query Frame = 1
BLAST of Cla013501 vs. NCBI nr
Match: gi|659112953|ref|XP_008456387.1| (PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo]) HSP 1 Score: 346.7 bits (888), Expect = 2.5e-92 Identity = 170/176 (96.59%), Postives = 175/176 (99.43%), Query Frame = 1
BLAST of Cla013501 vs. NCBI nr
Match: gi|1009126773|ref|XP_015880336.1| (PREDICTED: elongin-A [Ziziphus jujuba]) HSP 1 Score: 257.3 bits (656), Expect = 2.0e-65 Identity = 123/173 (71.10%), Postives = 147/173 (84.97%), Query Frame = 1
BLAST of Cla013501 vs. NCBI nr
Match: gi|224118862|ref|XP_002317925.1| (hypothetical protein POPTR_0012s05560g [Populus trichocarpa]) HSP 1 Score: 257.3 bits (656), Expect = 2.0e-65 Identity = 118/173 (68.21%), Postives = 155/173 (89.60%), Query Frame = 1
BLAST of Cla013501 vs. NCBI nr
Match: gi|700191812|gb|KGN47016.1| (hypothetical protein Csa_6G169320 [Cucumis sativus]) HSP 1 Score: 256.5 bits (654), Expect = 3.3e-65 Identity = 125/129 (96.90%), Postives = 128/129 (99.22%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |