Cla013501 (gene) Watermelon (97103) v1

NameCla013501
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionElongin-A (AHRD V1 ***- F2QYU6_PICP7); contains Interpro domain(s) IPR010684 RNA polymerase II transcription factor SIII, subunit A
LocationChr2 : 28702380 .. 28703487 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATCGAGTAAGAAAAATTCCATCCTTGGTTGATCTTTGTGTTAACAAAGCTATAGATAATCTAAGGTTCCTTGGGGATGTTGGCGAAACTGATATACATCTTTTAGACCGTATTTTGCCACATTGCACAGTTGACCAATTAATGCATGTGGAGAAGAGTTCAGAAGTAAGATTGGATGAATTTGCTTCTTGTTTTTAACTATCTAGTTTTATTTTAGTATATGTGCTCAATTGAGTATGGACTTCTTACAGGGAAGAGATCTGACTCCAATAACTGATAAATTGTGGAAAAAATTCTATGAAAGACAGTTTGGTAAAGAAAGTACTACTACTGTAATTGAGAGGATGCGGCAGAAAAGAGTGGCATTTAGATGGATTCAATTGTATGAGGTAGCTTTCCTTTTACTTCTCTTCGCATGCAATTGCTTTGATATTTGAGTATTGAATGACGGTTAGCATGATAATTGATTCCTCTTAGAATTGCCATAAAAAATGAAGCTATCTATTTTCAGGCGAAGATGAAGGACATTGAAAAGAATGAGAGTAAAGCTGCAGATAGAATAAAACAAAGCTACCAAAAGGAAAATGCCCGTATGTTCTATATCATATTTGCATACTCTCTAATGGATTTCCTCATAATCTTAAATTTGACTAACAATTAGCTCGAGCATGCTATGCATGTTATCTGGAAATTGTATCCACTCCCAACGTCTTATATATTAGAGGTATACTATTGGTTCATCTAAGAATAGATGTTATTGATTTTTACATGTATTTTAGGAATCGTTAGTGTTTTTGTTAAGTAGATGTTTTCTTAACATATGAGATTTTAAAGATTACCTCGAACATTTTAGGAAAACAAAGTCGTCAAATACAGATTTGCAGTAAGGTTCCCCCCTCGAGCAATAAGAGAAGCTTTGGAGGTAAACTTTATTTAATAGATTCTAACTCTGGCAAGGCTGCAGCTGACACCTTGCAAAGAAAAAAAATATTTACATTTTATTTTTTTCTCTTGATTTGTCGTAGGAACCGGATATGGCTACAATGTGGCAAACACTAAGAACAAGATACTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGGTAA

mRNA sequence

ATGTATCGAGTAAGAAAAATTCCATCCTTGGTTGATCTTTGTGTTAACAAAGCTATAGATAATCTAAGGTTCCTTGGGGATGTTGGCGAAACTGATATACATCTTTTAGACCGTATTTTGCCACATTGCACAGTTGACCAATTAATGCATGTGGAGAAGAGTTCAGAAGGAAGAGATCTGACTCCAATAACTGATAAATTGTGGAAAAAATTCTATGAAAGACAGTTTGGTAAAGAAAGTACTACTACTGTAATTGAGAGGATGCGGCAGAAAAGAGTGGCATTTAGATGGATTCAATTGTATGAGGCGAAGATGAAGGACATTGAAAAGAATGAGAGTAAAGCTGCAGATAGAATAAAACAAAGCTACCAAAAGGAAAATGCCCGAAAACAAAGTCGTCAAATACAGATTTGCAGTAAGGTTCCCCCCTCGAGCAATAAGAGAAGCTTTGGAGGAACCGGATATGGCTACAATGTGGCAAACACTAAGAACAAGATACTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGGTAA

Coding sequence (CDS)

ATGTATCGAGTAAGAAAAATTCCATCCTTGGTTGATCTTTGTGTTAACAAAGCTATAGATAATCTAAGGTTCCTTGGGGATGTTGGCGAAACTGATATACATCTTTTAGACCGTATTTTGCCACATTGCACAGTTGACCAATTAATGCATGTGGAGAAGAGTTCAGAAGGAAGAGATCTGACTCCAATAACTGATAAATTGTGGAAAAAATTCTATGAAAGACAGTTTGGTAAAGAAAGTACTACTACTGTAATTGAGAGGATGCGGCAGAAAAGAGTGGCATTTAGATGGATTCAATTGTATGAGGCGAAGATGAAGGACATTGAAAAGAATGAGAGTAAAGCTGCAGATAGAATAAAACAAAGCTACCAAAAGGAAAATGCCCGAAAACAAAGTCGTCAAATACAGATTTGCAGTAAGGTTCCCCCCTCGAGCAATAAGAGAAGCTTTGGAGGAACCGGATATGGCTACAATGTGGCAAACACTAAGAACAAGATACTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGGTAA

Protein sequence

MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIKQSYQKENARKQSRQIQICSKVPPSSNKRSFGGTGYGYNVANTKNKILKKAKIEVLQR
BLAST of Cla013501 vs. TrEMBL
Match: A9P8K1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05560g PE=2 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.4e-65
Identity = 118/173 (68.21%), Postives = 155/173 (89.60%), Query Frame = 1

Query: 5   RKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPIT 64
           RK+PSLVDLCV+ A++N+++LGDVGETD+HLLDRILPHCT+DQLMH+EKS+ GRDL+ +T
Sbjct: 6   RKVPSLVDLCVSLAVENVKYLGDVGETDLHLLDRILPHCTLDQLMHIEKSTVGRDLSSVT 65

Query: 65  DKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIKQSYQ 124
           DKLWK FYE+QFG+ ST  VI+RMRQK+V+FRW+QLYEAK+KDI + E+K A RI+Q Y+
Sbjct: 66  DKLWKTFYEKQFGERSTDLVIQRMRQKKVSFRWLQLYEAKLKDIAEAENKLAARIRQLYK 125

Query: 125 KENARKQSRQIQICSKVPPSSNKRSF-GGTGYGYNVANTKNKILKKAKIEVLQ 177
           KE+ RKQSRQ+++CSKVPPSSNKRSF GG+G GYN++N K+ ++KKAK++ L+
Sbjct: 126 KEDDRKQSRQVRLCSKVPPSSNKRSFCGGSGPGYNLSNGKSNLMKKAKMDFLK 178

BLAST of Cla013501 vs. TrEMBL
Match: A0A0A0KGZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G169320 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.3e-65
Identity = 125/129 (96.90%), Postives = 128/129 (99.22%), Query Frame = 1

Query: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60
           MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TP+TDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIK 120

Query: 121 QSYQKENAR 130
           QSY KENA+
Sbjct: 121 QSYLKENAQ 129

BLAST of Cla013501 vs. TrEMBL
Match: A0A061DJY1_THECC (Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 4.0e-65
Identity = 117/176 (66.48%), Postives = 152/176 (86.36%), Query Frame = 1

Query: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60
           M  VRK PSLVDLC+  AIDN+R+LGDVGETD HLL+RILPHCT+DQL+HVEKS++GRDL
Sbjct: 13  MSNVRKPPSLVDLCIRTAIDNVRYLGDVGETDSHLLERILPHCTMDQLIHVEKSTKGRDL 72

Query: 61  TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           +P+TDKLWK FYE QFG+ ST  VIERM+ K+V+FRW QLYEAK+KD+++ E+KA DR+K
Sbjct: 73  SPVTDKLWKNFYELQFGRASTNLVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRLK 132

Query: 121 QSYQKENARKQSRQIQICSKVPPSSNKRSFGGTGYGYNVANTKNKILKKAKIEVLQ 177
           Q Y+KE+ARKQSRQ+Q+C+KVPPSS +  F G+G GYN++  K+ I+KKAKI++++
Sbjct: 133 QLYKKEDARKQSRQVQLCTKVPPSSKRSFFAGSGPGYNLSYVKSNIMKKAKIDLMK 188

BLAST of Cla013501 vs. TrEMBL
Match: A0A0B0MEQ4_GOSAR (Elongin-A OS=Gossypium arboreum GN=F383_13223 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.2e-64
Identity = 116/173 (67.05%), Postives = 150/173 (86.71%), Query Frame = 1

Query: 4   VRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPI 63
           +RK PSLVDLCV   IDN+R+LGDVGETD HLL+RILPHCTVDQL+HVEKS++GRDL+ +
Sbjct: 16  MRKTPSLVDLCVRTVIDNVRYLGDVGETDSHLLERILPHCTVDQLLHVEKSTKGRDLSSV 75

Query: 64  TDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIKQSY 123
           TDKLWK FYE QFG+ES   VIERM+ K+V+FRW QLYEAK+KD+++ E+KA DR+KQ Y
Sbjct: 76  TDKLWKNFYELQFGRESMKIVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRLKQLY 135

Query: 124 QKENARKQSRQIQICSKVPPSSNKRSFGGTGYGYNVANTKNKILKKAKIEVLQ 177
           +KE+ARKQSRQ+Q+C+KVPPSS +  F G+G GYN++N K+ I+KKAKI++++
Sbjct: 136 KKEDARKQSRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMKKAKIDLMK 188

BLAST of Cla013501 vs. TrEMBL
Match: A0A0D2NJM7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.5e-64
Identity = 116/174 (66.67%), Postives = 150/174 (86.21%), Query Frame = 1

Query: 4   VRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPI 63
           +RK PSLVDLCV   IDN+R+LGDVGETD HLL+RILPHCTVDQL+HVE S++GRDL+ +
Sbjct: 16  MRKTPSLVDLCVRTVIDNVRYLGDVGETDSHLLERILPHCTVDQLLHVETSTKGRDLSSV 75

Query: 64  TDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIKQSY 123
           TDKLWK FYE QFG+ES   VIERM+ K+V+FRW QLYEAK+KD+++ E+KA DR+KQ Y
Sbjct: 76  TDKLWKNFYELQFGRESMQIVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRLKQLY 135

Query: 124 QKENARKQSRQIQICSKVPPSSNKRSFGGTGYGYNVANTKNKILKKAKIEVLQR 178
           +KE+ARKQSRQ+Q+C+KVPPSS +  F G+G GYN++N K+ I+KKAKI++++R
Sbjct: 136 KKEDARKQSRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMKKAKIDLMKR 189

BLAST of Cla013501 vs. NCBI nr
Match: gi|449450878|ref|XP_004143189.1| (PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus])

HSP 1 Score: 349.0 bits (894), Expect = 4.9e-93
Identity = 172/176 (97.73%), Postives = 175/176 (99.43%), Query Frame = 1

Query: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60
           MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TP+TDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIK 120

Query: 121 QSYQKENARKQSRQIQICSKVPPSSNKRSFGGTGYGYNVANTKNKILKKAKIEVLQ 177
           QSY KENARKQSRQIQICSKVPPSSNKRSFGG+GYGYNVANTKNKILKKAKIEVLQ
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQ 176

BLAST of Cla013501 vs. NCBI nr
Match: gi|659112953|ref|XP_008456387.1| (PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo])

HSP 1 Score: 346.7 bits (888), Expect = 2.5e-92
Identity = 170/176 (96.59%), Postives = 175/176 (99.43%), Query Frame = 1

Query: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60
           MYRVRKIPSLVDLCVNKAIDN+RFLGDVGETDIHLL+RILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TP+TDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 121 QSYQKENARKQSRQIQICSKVPPSSNKRSFGGTGYGYNVANTKNKILKKAKIEVLQ 177
           QSY KENARKQSRQIQICSKVPPSSNKRSFGG+GYGYNVANTKNKILKKAKIEVLQ
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQ 176

BLAST of Cla013501 vs. NCBI nr
Match: gi|1009126773|ref|XP_015880336.1| (PREDICTED: elongin-A [Ziziphus jujuba])

HSP 1 Score: 257.3 bits (656), Expect = 2.0e-65
Identity = 123/173 (71.10%), Postives = 147/173 (84.97%), Query Frame = 1

Query: 5   RKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPIT 64
           +K PSLVDLCV  AIDN+R+LGDVGETDI+LLD+ILPHCT+DQLMHVEK SEGRDL+PIT
Sbjct: 10  QKAPSLVDLCVRTAIDNIRYLGDVGETDIYLLDKILPHCTLDQLMHVEKCSEGRDLSPIT 69

Query: 65  DKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIKQSYQ 124
           DKLWKKFYE+ FG EST  V++RM  K V F+W QLYEAK+KD+   E KA DRI Q Y+
Sbjct: 70  DKLWKKFYEKDFGVESTNLVVKRMNTKGVFFKWKQLYEAKLKDVANAEKKAVDRIMQLYK 129

Query: 125 KENARKQSRQIQICSKVPPSSNKRS-FGGTGYGYNVANTKNKILKKAKIEVLQ 177
           KE+ARKQSRQ+Q CSKVPPSSNKRS FGG+G GYNV+N K+ ++KK++IE L+
Sbjct: 130 KEDARKQSRQVQFCSKVPPSSNKRSFFGGSGPGYNVSNLKSNLMKKSRIEFLK 182

BLAST of Cla013501 vs. NCBI nr
Match: gi|224118862|ref|XP_002317925.1| (hypothetical protein POPTR_0012s05560g [Populus trichocarpa])

HSP 1 Score: 257.3 bits (656), Expect = 2.0e-65
Identity = 118/173 (68.21%), Postives = 155/173 (89.60%), Query Frame = 1

Query: 5   RKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPIT 64
           RK+PSLVDLCV+ A++N+++LGDVGETD+HLLDRILPHCT+DQLMH+EKS+ GRDL+ +T
Sbjct: 6   RKVPSLVDLCVSLAVENVKYLGDVGETDLHLLDRILPHCTLDQLMHIEKSTVGRDLSSVT 65

Query: 65  DKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIKQSYQ 124
           DKLWK FYE+QFG+ ST  VI+RMRQK+V+FRW+QLYEAK+KDI + E+K A RI+Q Y+
Sbjct: 66  DKLWKTFYEKQFGERSTDLVIQRMRQKKVSFRWLQLYEAKLKDIAEAENKLAARIRQLYK 125

Query: 125 KENARKQSRQIQICSKVPPSSNKRSF-GGTGYGYNVANTKNKILKKAKIEVLQ 177
           KE+ RKQSRQ+++CSKVPPSSNKRSF GG+G GYN++N K+ ++KKAK++ L+
Sbjct: 126 KEDDRKQSRQVRLCSKVPPSSNKRSFCGGSGPGYNLSNGKSNLMKKAKMDFLK 178

BLAST of Cla013501 vs. NCBI nr
Match: gi|700191812|gb|KGN47016.1| (hypothetical protein Csa_6G169320 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 3.3e-65
Identity = 125/129 (96.90%), Postives = 128/129 (99.22%), Query Frame = 1

Query: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60
           MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TP+TDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIK 120

Query: 121 QSYQKENAR 130
           QSY KENA+
Sbjct: 121 QSYLKENAQ 129

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A9P8K1_POPTR1.4e-6568.21Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05560g PE=2 SV=1[more]
A0A0A0KGZ5_CUCSA2.3e-6596.90Uncharacterized protein OS=Cucumis sativus GN=Csa_6G169320 PE=4 SV=1[more]
A0A061DJY1_THECC4.0e-6566.48Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=... [more]
A0A0B0MEQ4_GOSAR1.2e-6467.05Elongin-A OS=Gossypium arboreum GN=F383_13223 PE=4 SV=1[more]
A0A0D2NJM7_GOSRA1.5e-6466.67Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449450878|ref|XP_004143189.1|4.9e-9397.73PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus][more]
gi|659112953|ref|XP_008456387.1|2.5e-9296.59PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo][more]
gi|1009126773|ref|XP_015880336.1|2.0e-6571.10PREDICTED: elongin-A [Ziziphus jujuba][more]
gi|224118862|ref|XP_002317925.1|2.0e-6568.21hypothetical protein POPTR_0012s05560g [Populus trichocarpa][more]
gi|700191812|gb|KGN47016.1|3.3e-6596.90hypothetical protein Csa_6G169320 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010684RNA_pol_II_trans_fac_SIII_A
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0016021integral component of membrane
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
biological_process GO:0006414 translational elongation
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0070449 elongin complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003746 translation elongation factor activity
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU08441watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU09219watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU15682watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU29869watermelon unigene v2 vs TrEMBLtranscribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla013501Cla013501.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU29869WMU29869transcribed_cluster
WMU08441WMU08441transcribed_cluster
WMU09219WMU09219transcribed_cluster
WMU15682WMU15682transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010684RNA polymerase II transcription factor SIII, subunit APFAMPF06881Elongin_Acoord: 26..135
score: 2.2
NoneNo IPR availableunknownCoilCoilcoord: 98..118
scor
NoneNo IPR availablePANTHERPTHR15141TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3coord: 5..177
score: 3.0
NoneNo IPR availablePANTHERPTHR15141:SF53PROTEIN T23E1.3, ISOFORM Acoord: 5..177
score: 3.0

The following gene(s) are paralogous to this gene:

None