CmoCh01G021030 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G021030
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSplicing factor U2af small subunit A
LocationCmo_Chr01 : 14553947 .. 14556073 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAACACTTGGCCTCAATATTTGGCACCGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGTTGCTCTCGCCTCCACAACCGCCCTACTATTTCCCCCACTCTTCTCTTATCGAACATGTACCAGCGCCCCGACATGATCACCCCTGGTGTCGATGCTCAGGGTCAGCCCATAGATCCCCGCAAGATTCAGGAACACTTCGAGGATTTCTACGAAGACATTTACGAGGAACTCGGAAAGTTCGGTGAGATCGAGAGCCTCAACATCTGTGATAATCTCGCCGACCACATGATCGGCAATGTTTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCTGCCGCACTTCAAGCGTTGCAAGGGCGATTCTACTCTGGTCGACCCATAATCGCAGATTTTTCTCCGGTGACAGATTTCCGCGAGGCCACGTGCCGCCAGTACGAGGAGAATAATTGTAATCGAGGTGGATATTGCAATTTTATGCATGTTAAGATGATTGGGAAGGACTTGAGGAGGAAGCTGTTCGGTAGTAGGTTCCGGGGTTATAGGCGGAGCCGTAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAGGACTACGATAGGCGTGAGAGGGATTATAGAGATCGTGACCATCGTGGAAACGGACGGAGCAAGGAGCGTCCAGATAGGTATGACAGAGATGGGGGAAGGAGAAGGCATGGAAGCCCCAGGCGAAGCAGAAGTCCTGTCAGAGAAGGAAGCGAAGAGCGCCGAGCCCGTATTGAACAGTGGAACAGAGAGAGGGAGGAGAAGCAGTGAGGCGTACGTGTTCGTGTTGGAATTTGCCTGTTTGGTAATTGTTCTGTGCTCTTTGTCATTTAATTATGTACCTTACCTTACACCAGAGTACCGTCTGCCCGAATAGGAAGTAGAAATCTTTTCTAGACAAAACAATGGATATGATATCAAGTAGGCCATTCGGTTGTGTTATTTCTCTTTCTAGTTGCTGTTGTCGGATATGATTTCTCACCGTTTCTATCTTCGCTTCATCATTCATATGCTTTAACAACCTGTGTTTCTTCTGTTTATGCCAACTTGCTTTCTACTTGTTATGAATTTCAGTTTCTCCTACATGAATTTCTGATCCAGGCAAGAACAGGATAGAAAATACGTTGGCATGTTAGCTAGCAATTCAAATTCCGATTACTTTTTCACTATCAGTCGGCTGGGAAGTACATGGAGATGTTGTCCAACTTGTGGGGGAAGGAGTTACATTTGAGTATACGTGAGAAAAAGTGAAATCATGGTGCTTTTAGATCGTTGAGTGTGAAACAAATAAAGTTGTACTGTGTGCTAGTCAAATTGATGAATGTTGATTATGTTCACTAACCGTGTATGGCCTTGTTGTTCCTTGCATAACTAGTTTTGGTAGAGAGTAACCTTCTTTAGATGTTCCACGACTTTTCTTTATATGGAAATTGTTTGAAAATTGTTTGGGTTTTGAAAGGGCCTAGAGATATTAGCGCCTTTTTTCAGATGAATTGTCGTTCGATAGTTATTATAGCTAGGATAATCAGGCCATATCTATATAACTTGGACTTTCATACTAGATGATAACAATCTTTTGCTGAAAAAAAAAATAAGTCTATGGAAATATGCAGAGGTGAGCAACATGCTGTTGTTGAATGGCAGCAAATGAGGAATCTCGCTTGATTTGATACTTGAATAAGAAAGTAGAGCAATGGATACCTTTATGGGCGAGGGAGAGGTAGAAGCAGAGGAAGATTATCGTGGCCAATGGAAACATGAAGCCGTCCTTATGATAGAGTTCCCATGGACTTCGGGGGGGAAAATAAAATGCCATGGGACTGGATGGATTATATTCATTTTGATATATTGCGTGGATTCTGTCTTAAGAATTGGTGCTTATATATGGATTTCTTTCTTCCCCTTTGCTCTCCTTGTTTGGAGGGATAGGTCCTATGCGTTTCTATAGGATGATGGCTTGTGATTGACAAATTAGTTCAGGTTGAGGTGACAAATTAGTTCAGGTTGTTACTGCACCAATTCCCGTTTAACAATCCTGATGGCAATGCTTCAAATATGCAGAAATAG

mRNA sequence

ATGGCTGAACACTTGGCCTCAATATTTGGCACCGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGTTGCTCTCGCCTCCACAACCGCCCTACTATTTCCCCCACTCTTCTCTTATCGAACATGTACCAGCGCCCCGACATGATCACCCCTGGTGTCGATGCTCAGGGTCAGCCCATAGATCCCCGCAAGATTCAGGAACACTTCGAGGATTTCTACGAAGACATTTACGAGGAACTCGGAAAGTTCGGTGAGATCGAGAGCCTCAACATCTGTGATAATCTCGCCGACCACATGATCGGCAATGTTTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCTGCCGCACTTCAAGCGTTGCAAGGGCGATTCTACTCTGGTCGACCCATAATCGCAGATTTTTCTCCGGTGACAGATTTCCGCGAGGCCACGTGCCGCCAGTACGAGGAGAATAATTGTAATCGAGGTGGATATTGCAATTTTATGCATGTTAAGATGATTGGGAAGGACTTGAGGAGGAAGCTGTTCGGTAGTAGGTTCCGGGGTTATAGGCGGAGCCGTAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAGGACTACGATAGGCGTGAGAGGGATTATAGAGATCGTGACCATCGTGGAAACGGACGGAGCAAGGAGCGTCCAGATAGGTATGACAGAGATGGGGGAAGGAGAAGGCATGGAAGCCCCAGGCGAAGCAGAAGTCCTGTCAGAGAAGGAAGCGAAGAGCGCCGAGCCCGTATTGAACAGTGGAACAGAGAGAGGGAGGAGAAGCAGTTGTTACTGCACCAATTCCCGTTTAACAATCCTGATGGCAATGCTTCAAATATGCAGAAATAG

Coding sequence (CDS)

ATGGCTGAACACTTGGCCTCAATATTTGGCACCGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGTTGCTCTCGCCTCCACAACCGCCCTACTATTTCCCCCACTCTTCTCTTATCGAACATGTACCAGCGCCCCGACATGATCACCCCTGGTGTCGATGCTCAGGGTCAGCCCATAGATCCCCGCAAGATTCAGGAACACTTCGAGGATTTCTACGAAGACATTTACGAGGAACTCGGAAAGTTCGGTGAGATCGAGAGCCTCAACATCTGTGATAATCTCGCCGACCACATGATCGGCAATGTTTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCTGCCGCACTTCAAGCGTTGCAAGGGCGATTCTACTCTGGTCGACCCATAATCGCAGATTTTTCTCCGGTGACAGATTTCCGCGAGGCCACGTGCCGCCAGTACGAGGAGAATAATTGTAATCGAGGTGGATATTGCAATTTTATGCATGTTAAGATGATTGGGAAGGACTTGAGGAGGAAGCTGTTCGGTAGTAGGTTCCGGGGTTATAGGCGGAGCCGTAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAGGACTACGATAGGCGTGAGAGGGATTATAGAGATCGTGACCATCGTGGAAACGGACGGAGCAAGGAGCGTCCAGATAGGTATGACAGAGATGGGGGAAGGAGAAGGCATGGAAGCCCCAGGCGAAGCAGAAGTCCTGTCAGAGAAGGAAGCGAAGAGCGCCGAGCCCGTATTGAACAGTGGAACAGAGAGAGGGAGGAGAAGCAGTTGTTACTGCACCAATTCCCGTTTAACAATCCTGATGGCAATGCTTCAAATATGCAGAAATAG
Homology
[Close]
BLAST of CmoCh01G021030 vs. Swiss-Prot
Match: U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=1 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 7.9e-128
Identity = 237/281 (84.34%), Postives = 256/281 (91.10%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLN+CDNLADHMIGNVYV F+EED
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
            AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRKLFGSRFRGYRR-SRSRSRSLSPRNRKDYDR-RER-DYRDRDHRGNG-RSKERPDRYD 240
           RRKLFG   R YRR SRSRSRS+SPR ++++ R RER D RDRD  GNG RS +R +R+D
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 241 RD-GGRRRHGSPRRSRSP--VREGSEERRARIEQWNREREE 275
           RD GGRRRHGSP+RSRSP  VREGSEERRARIEQWNRER+E
Sbjct: 241 RDGGGRRRHGSPKRSRSPRNVREGSEERRARIEQWNRERDE 281

[Close]
BLAST of CmoCh01G021030 vs. Swiss-Prot
Match: U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 8.7e-127
Identity = 237/292 (81.16%), Postives = 257/292 (88.01%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLNICDNLADHMIGNVYVQF+EED
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++L
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RRKLFGSRFRGYR---RSRSRSRSLSPRNRKDYDRRERDYRDRDHR---------GNG-R 240
           RRKLFG   R YR   RSRSRSRS+SPRN++D DRR+  +R+  HR         G+G R
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKR 240

Query: 241 SKERPDRYDRDGGR-RRHGSPRRSRSP--VREGSEERRARIEQWNREREEKQ 277
           S ER +R +RDG R RR  SP+R  SP   REGSEERRARIEQWNREREEK+
Sbjct: 241 SSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREEKE 292

[Close]
BLAST of CmoCh01G021030 vs. Swiss-Prot
Match: U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 2.2e-117
Identity = 227/306 (74.18%), Postives = 248/306 (81.05%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPT+SPT++L+NMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDP K+QEHFEDFYEDIYEEL KFGE+E+LN+CDNLADHMIGNVYVQFREE+
Sbjct: 61  GVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEE 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QA AA  ALQGRFYSGRPII ++SPVTDFREATCRQ+EEN+CNRGGYCNFMHVK IG++L
Sbjct: 121 QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL 180

Query: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRK-----DYDRRERD------------------- 240
           RRKL+G R R   RS  RSRS SPR+R+     D  RRERD                   
Sbjct: 181 RRKLYGGRSR---RSHGRSRSPSPRHRRGNRDRDDFRRERDGYRGGGDGYRGGGGGGGGD 240

Query: 241 -YRDRD-HRGNGRSKERP--DRYDR--DGGRRRHGSP-RRSRSPVREGSEERRARIEQWN 276
            YR  D +RG G    R    RYDR  DGGRRRHGSP RR+RSPVRE SEERRA+IEQWN
Sbjct: 241 GYRGGDSYRGGGGGGRRGGGSRYDRYDDGGRRRHGSPPRRARSPVRESSEERRAKIEQWN 300

[Close]
BLAST of CmoCh01G021030 vs. Swiss-Prot
Match: U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 6.1e-112
Identity = 216/293 (73.72%), Postives = 238/293 (81.23%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN+P++SPTLLLSNMY RPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           G+DAQG PIDP KIQ  FEDFYEDI+EEL K+GEIESL++CDN ADHMIGNVYVQFREED
Sbjct: 61  GIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAA ALQAL GR+YSGRPII +FSPV+DFREATCRQYEEN+CNRGGYCNFMHVK IG+DL
Sbjct: 121 QAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIGRDL 180

Query: 181 RRKLFGSRFRGYR-RSRSRSRSLSPRN-RKDYDRRERDYRDRDHR-------------GN 240
           R++LFG   R  R  S  RSRS SP + R+DYDRR    R RDH              G+
Sbjct: 181 RKRLFGHLHRSRRSHSHGRSRSPSPYHYRRDYDRRSSS-RSRDHDDYYRGGSHDYYRGGS 240

Query: 241 GRSKERP-DRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQL 278
            RS ER    YD DG RRRH S  R+RSPVR+GSEERRA+IEQWNRERE  Q+
Sbjct: 241 RRSSERHRSSYDSDGSRRRHRS--RTRSPVRDGSEERRAQIEQWNREREAAQV 290

[Close]
BLAST of CmoCh01G021030 vs. Swiss-Prot
Match: U2AF1_BOVIN (Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 9.5e-65
Identity = 133/258 (51.55%), Postives = 172/258 (66.67%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P   + 
Sbjct: 1   MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELG-KFGEIESLNICDNLADHMIGNVYVQFREE 120
             D     +   ++QEH+++F+E+++ E+  K+GE+E +N+CDNL DH++GNVYV+FR E
Sbjct: 61  SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120

Query: 121 DQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKD 180
           + A  A+  L  R+++G+PI A+ SPVTDFREA CRQYE   C RGG+CNFMH+K I ++
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180

Query: 181 LRRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDG 240
           LRR+L+G R R   RSRSRSR          +RR R  RDR   G G            G
Sbjct: 181 LRRELYGRR-RKKHRSRSRSR----------ERRSRS-RDRGRGGGG-----------GG 235

Query: 241 GRRRHGSPRRSRSPVREG 258
           G  R    RRSR   R G
Sbjct: 241 GGGRERDRRRSRDRERSG 235

[Close]
BLAST of CmoCh01G021030 vs. TrEMBL
Match: A0A0A0L4P8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664540 PE=4 SV=1)

HSP 1 Score: 515.0 bits (1325), Expect = 6.1e-143
Identity = 263/280 (93.93%), Postives = 269/280 (96.07%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+CDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGG 240
           RRKLFG R+RGYR SRSRSRSLSPRNRK++DRRERDYRDRD+RGNGRSKE   R+DRDGG
Sbjct: 181 RRKLFG-RYRGYRASRSRSRSLSPRNRKEHDRRERDYRDRDYRGNGRSKE---RHDRDGG 240

Query: 241 RRRHGSPRRSRSP----VREGSEERRARIEQWNREREEKQ 277
           RRR GSPRRSRS     VREGSEERRARIEQWNREREEKQ
Sbjct: 241 RRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ 276

[Close]
BLAST of CmoCh01G021030 vs. TrEMBL
Match: A0A067KY41_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08020 PE=4 SV=1)

HSP 1 Score: 501.5 bits (1290), Expect = 6.9e-139
Identity = 254/281 (90.39%), Postives = 268/281 (95.37%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDI+EEL KFGEIESLN+CDNLADHMIGNVYVQFREE+
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIESLNVCDNLADHMIGNVYVQFREEE 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQ+EENNCNRGGYCNFMHVK+IG+DL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDL 180

Query: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNR----KDYDRRERDYRDRDHRGNG-RSKERPDRY 240
           RRKLFG R+RGYR SRSRSRS SP++R    +D DRR+RDYRDRD+RGNG RS ER +RY
Sbjct: 181 RRKLFG-RYRGYRGSRSRSRSASPKHRRDKDRDNDRRDRDYRDRDYRGNGRRSGERNERY 240

Query: 241 DRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 277
           +RD GRRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ
Sbjct: 241 ERDSGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 280

[Close]
BLAST of CmoCh01G021030 vs. TrEMBL
Match: B9H5X4_POPTR (U2 snRNP auxiliary factor small subunit family protein OS=Populus trichocarpa GN=POPTR_0005s27940g PE=4 SV=1)

HSP 1 Score: 491.5 bits (1264), Expect = 7.2e-136
Identity = 250/279 (89.61%), Postives = 262/279 (93.91%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSN Y RPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNTYHRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQP+DP KIQEHFEDFYEDI+EEL KFGEIE+LN+CDNLADHMIGNVYVQF+EED
Sbjct: 61  GVDAQGQPLDPHKIQEHFEDFYEDIFEELSKFGEIENLNVCDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQ+LQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK+IGKDL
Sbjct: 121 QAAAALQSLQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLIGKDL 180

Query: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNR-KDYDRRERDY--RDRDHRGNGRSKERPDRYDR 240
           RRKLFG R+RGYR SRSRSRS+SPR R +DYDRRERDY  RDRD+RGNGR      R DR
Sbjct: 181 RRKLFG-RYRGYRVSRSRSRSVSPRRRDRDYDRRERDYRDRDRDYRGNGR------RNDR 240

Query: 241 DGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 277
           DGGR+RHGSPRRSRSPVREGSEERRARIEQWNREREEKQ
Sbjct: 241 DGGRKRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 272

[Close]
BLAST of CmoCh01G021030 vs. TrEMBL
Match: B9R8U8_RICCO (U2 snrnp auxiliary factor, small subunit, putative OS=Ricinus communis GN=RCOM_1602290 PE=4 SV=1)

HSP 1 Score: 490.0 bits (1260), Expect = 2.1e-135
Identity = 251/278 (90.29%), Postives = 260/278 (93.53%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDI+EELGKFGEIESLN+CDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIFEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQ+EENNCNRGGYCNFMHVK+IG+DL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDL 180

Query: 181 RRKLFGSRFRGYRRSRSRSRSLSP---RNRKDYDRRERDYRDRDHRGNGRSKERPDRYDR 240
           RRKLFG R+RGYR SRSRSRS+SP   R  K  DRRERDYRDRD+RGNGR     DR+DR
Sbjct: 181 RRKLFG-RYRGYRASRSRSRSVSPSRHRREKSNDRRERDYRDRDYRGNGRRSG--DRHDR 240

Query: 241 DGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK 276
               RRHGSPRRSRSPVREGSEERRARIEQWNREREEK
Sbjct: 241 ----RRHGSPRRSRSPVREGSEERRARIEQWNREREEK 271

[Close]
BLAST of CmoCh01G021030 vs. TrEMBL
Match: A0A059BWL0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03613 PE=4 SV=1)

HSP 1 Score: 488.8 bits (1257), Expect = 4.7e-135
Identity = 247/281 (87.90%), Postives = 269/281 (95.73%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDI+EEL KFGEIESLN+CDNLADHMIGNVYVQF+EED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIESLNVCDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAAL ALQGRFYSGRPIIADFSPVTDFREATCRQ+EENNCNRGGYCNFMHVKMIG++L
Sbjct: 121 QAAAALHALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKMIGREL 180

Query: 181 RRKLFGS-RFRGYRRSRSRSRSLSP-RNRKDYDRRERDYRDRDHRGNGR--SKERPDRYD 240
           RR+LFG   +RGYR +RSRSRS+SP R+R+++DRRER+++DRD+RGNGR  S ER D+++
Sbjct: 181 RRRLFGRYSYRGYRGARSRSRSMSPTRHRREHDRREREHKDRDYRGNGRRGSGERYDKHE 240

Query: 241 RD-GGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 277
           RD GGRRRHGSPRRSRSPVREGSEERRARIEQWNREREE+Q
Sbjct: 241 RDGGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREERQ 281

[Close]
BLAST of CmoCh01G021030 vs. TAIR10
Match: AT5G42820.2 (AT5G42820.2 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 458.0 bits (1177), Expect = 4.5e-129
Identity = 237/281 (84.34%), Postives = 256/281 (91.10%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLN+CDNLADHMIGNVYV F+EED
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
            AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRKLFGSRFRGYRR-SRSRSRSLSPRNRKDYDR-RER-DYRDRDHRGNG-RSKERPDRYD 240
           RRKLFG   R YRR SRSRSRS+SPR ++++ R RER D RDRD  GNG RS +R +R+D
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 241 RD-GGRRRHGSPRRSRSP--VREGSEERRARIEQWNREREE 275
           RD GGRRRHGSP+RSRSP  VREGSEERRARIEQWNRER+E
Sbjct: 241 RDGGGRRRHGSPKRSRSPRNVREGSEERRARIEQWNRERDE 281

[Close]
BLAST of CmoCh01G021030 vs. TAIR10
Match: AT1G27650.1 (AT1G27650.1 U2 snRNP auxiliary factor small subunit, putative)

HSP 1 Score: 454.5 bits (1168), Expect = 4.9e-128
Identity = 237/292 (81.16%), Postives = 257/292 (88.01%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLNICDNLADHMIGNVYVQF+EED
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++L
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RRKLFGSRFRGYR---RSRSRSRSLSPRNRKDYDRRERDYRDRDHR---------GNG-R 240
           RRKLFG   R YR   RSRSRSRS+SPRN++D DRR+  +R+  HR         G+G R
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKR 240

Query: 241 SKERPDRYDRDGGR-RRHGSPRRSRSP--VREGSEERRARIEQWNREREEKQ 277
           S ER +R +RDG R RR  SP+R  SP   REGSEERRARIEQWNREREEK+
Sbjct: 241 SSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREEKE 292

[Close]
BLAST of CmoCh01G021030 vs. TAIR10
Match: AT1G10320.1 (AT1G10320.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 141.7 bits (356), Expect = 7.1e-34
Identity = 67/167 (40.12%), Postives = 105/167 (62.87%), Query Frame = 1 

Query: 9   FGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQP 68
           FGTE+D+ +CPF+ K GACR G RCSR+H  P  S TLL+ NMY  P  IT   D +G  
Sbjct: 237 FGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPG-ITWEQD-EGLE 296

Query: 69  IDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREEDQAAAALQA 128
               + +  +E+FYED++ E  K+GE+ +  +C N + H+ GNVYV +R  + A  A Q+
Sbjct: 297 YTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQS 356

Query: 129 LQGRFYSGRPIIADFSPVTDFREATCRQYEEN---NCNRGGYCNFMH 173
           + GR+++G+ +  +F  ++ ++ A C +Y ++    C+RG  CNF+H
Sbjct: 357 INGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIH 401

[Close]
BLAST of CmoCh01G021030 vs. TAIR10
Match: AT3G44785.1 (AT3G44785.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 105.1 bits (261), Expect = 7.3e-23
Identity = 48/73 (65.75%), Postives = 57/73 (78.08%), Query Frame = 1 

Query: 1  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
          M EHLASI+GTEKDRVNCPFYFKIG CR+GDRCSRL+ +P+ISPTLLLSN YQ+  +   
Sbjct: 1  MVEHLASIYGTEKDRVNCPFYFKIGVCRNGDRCSRLYTKPSISPTLLLSNTYQQGRLKQF 60

Query: 61 GVDAQGQPIDPRK 74
              Q +  DP+K
Sbjct: 61 LDPVQSREKDPKK 73

[Close]
BLAST of CmoCh01G021030 vs. NCBI nr
Match: gi|659105117|ref|XP_008453027.1| (PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo])

HSP 1 Score: 515.8 bits (1327), Expect = 5.1e-143
Identity = 264/280 (94.29%), Postives = 271/280 (96.79%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+CDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGG 240
           RRKLFG R+RGYR SRSRSRSLSPRNRK+YDRRERDYR+R++RGNGRSKE   R+DRDGG
Sbjct: 181 RRKLFG-RYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKE---RHDRDGG 240

Query: 241 RRRHGSPR--RSRSPV--REGSEERRARIEQWNREREEKQ 277
           RRRHGSPR  RSRSPV  REGSEERRARIEQWNREREEKQ
Sbjct: 241 RRRHGSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 276

[Close]
BLAST of CmoCh01G021030 vs. NCBI nr
Match: gi|449455651|ref|XP_004145565.1| (PREDICTED: splicing factor U2af small subunit B-like [Cucumis sativus])

HSP 1 Score: 515.0 bits (1325), Expect = 8.7e-143
Identity = 263/280 (93.93%), Postives = 269/280 (96.07%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+CDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGG 240
           RRKLFG R+RGYR SRSRSRSLSPRNRK++DRRERDYRDRD+RGNGRSKE   R+DRDGG
Sbjct: 181 RRKLFG-RYRGYRASRSRSRSLSPRNRKEHDRRERDYRDRDYRGNGRSKE---RHDRDGG 240

Query: 241 RRRHGSPRRSRSP----VREGSEERRARIEQWNREREEKQ 277
           RRR GSPRRSRS     VREGSEERRARIEQWNREREEKQ
Sbjct: 241 RRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ 276

[Close]
BLAST of CmoCh01G021030 vs. NCBI nr
Match: gi|802604291|ref|XP_012073547.1| (PREDICTED: splicing factor U2af small subunit B-like [Jatropha curcas])

HSP 1 Score: 501.5 bits (1290), Expect = 1.0e-138
Identity = 254/281 (90.39%), Postives = 268/281 (95.37%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDI+EEL KFGEIESLN+CDNLADHMIGNVYVQFREE+
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIESLNVCDNLADHMIGNVYVQFREEE 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQ+EENNCNRGGYCNFMHVK+IG+DL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDL 180

Query: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNR----KDYDRRERDYRDRDHRGNG-RSKERPDRY 240
           RRKLFG R+RGYR SRSRSRS SP++R    +D DRR+RDYRDRD+RGNG RS ER +RY
Sbjct: 181 RRKLFG-RYRGYRGSRSRSRSASPKHRRDKDRDNDRRDRDYRDRDYRGNGRRSGERNERY 240

Query: 241 DRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 277
           +RD GRRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ
Sbjct: 241 ERDSGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 280

[Close]
BLAST of CmoCh01G021030 vs. NCBI nr
Match: gi|743895721|ref|XP_011041133.1| (PREDICTED: splicing factor U2af small subunit B-like [Populus euphratica])

HSP 1 Score: 492.3 bits (1266), Expect = 6.0e-136
Identity = 250/279 (89.61%), Postives = 263/279 (94.27%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSN Y RPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNTYHRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQP+DPRKIQEHFEDFYEDI+EEL KFGEIE+LN+CDNLADHMIGNVYVQF+EED
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFYEDIFEELSKFGEIENLNVCDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQ+LQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK+IG+DL
Sbjct: 121 QAAAALQSLQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLIGRDL 180

Query: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNR-KDYDRRERDY--RDRDHRGNGRSKERPDRYDR 240
           RRKLFG R+RGYR SRSRSRS+SPR R +DYDRRERDY  RDRD+RGNGR      R DR
Sbjct: 181 RRKLFG-RYRGYRVSRSRSRSVSPRRRDRDYDRRERDYRDRDRDYRGNGR------RNDR 240

Query: 241 DGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 277
           DGGR+RHGSPRRSRSPVREGSEERRARIEQWNREREEKQ
Sbjct: 241 DGGRKRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 272

[Close]
BLAST of CmoCh01G021030 vs. NCBI nr
Match: gi|224086130|ref|XP_002307825.1| (U2 snRNP auxiliary factor small subunit family protein [Populus trichocarpa])

HSP 1 Score: 491.5 bits (1264), Expect = 1.0e-135
Identity = 250/279 (89.61%), Postives = 262/279 (93.91%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSN Y RPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNTYHRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQP+DP KIQEHFEDFYEDI+EEL KFGEIE+LN+CDNLADHMIGNVYVQF+EED
Sbjct: 61  GVDAQGQPLDPHKIQEHFEDFYEDIFEELSKFGEIENLNVCDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQ+LQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK+IGKDL
Sbjct: 121 QAAAALQSLQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLIGKDL 180

Query: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNR-KDYDRRERDY--RDRDHRGNGRSKERPDRYDR 240
           RRKLFG R+RGYR SRSRSRS+SPR R +DYDRRERDY  RDRD+RGNGR      R DR
Sbjct: 181 RRKLFG-RYRGYRVSRSRSRSVSPRRRDRDYDRRERDYRDRDRDYRGNGR------RNDR 240

Query: 241 DGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 277
           DGGR+RHGSPRRSRSPVREGSEERRARIEQWNREREEKQ
Sbjct: 241 DGGRKRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 272

The following BLAST results are available for this feature:
BLAST of CmoCh01G021030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
U2AFB_ARATH7.9e-12884.34Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=1 SV=... [more]
U2AFA_ARATH8.7e-12781.16Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=... [more]
U2AFB_ORYSJ2.2e-11774.18Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica GN=U2AF35B ... [more]
U2AFA_ORYSJ6.1e-11273.72Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A ... [more]
U2AF1_BOVIN9.5e-6551.55Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2 SV=1[more]
BLAST of CmoCh01G021030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4P8_CUCSA6.1e-14393.93Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664540 PE=4 SV=1[more]
A0A067KY41_JATCU6.9e-13990.39Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08020 PE=4 SV=1[more]
B9H5X4_POPTR7.2e-13689.61U2 snRNP auxiliary factor small subunit family protein OS=Populus trichocarpa GN... [more]
B9R8U8_RICCO2.1e-13590.29U2 snrnp auxiliary factor, small subunit, putative OS=Ricinus communis GN=RCOM_1... [more]
A0A059BWL0_EUCGR4.7e-13587.90Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03613 PE=4 SV=1[more]
BLAST of CmoCh01G021030 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G42820.24.5e-12984.34 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT1G27650.14.9e-12881.16 U2 snRNP auxiliary factor small subunit, putative[more]
AT1G10320.17.1e-3440.12 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT3G44785.17.3e-2365.75 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
BLAST of CmoCh01G021030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659105117|ref|XP_008453027.1|5.1e-14394.29PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo][more]
gi|449455651|ref|XP_004145565.1|8.7e-14393.93PREDICTED: splicing factor U2af small subunit B-like [Cucumis sativus][more]
gi|802604291|ref|XP_012073547.1|1.0e-13890.39PREDICTED: splicing factor U2af small subunit B-like [Jatropha curcas][more]
gi|743895721|ref|XP_011041133.1|6.0e-13689.61PREDICTED: splicing factor U2af small subunit B-like [Populus euphratica][more]
gi|224086130|ref|XP_002307825.1|1.0e-13589.61U2 snRNP auxiliary factor small subunit family protein [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR000571Znf_CCCH
IPR003954RRM_dom_euk
IPR009145U2AF_small
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0046872metal ion binding
GO:0003723RNA binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0089701U2AF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007067 mitotic nuclear division
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0048573 photoperiodism, flowering
cellular_component GO:0089701 U2AF
cellular_component GO:0005681 spliceosomal complex
molecular_function GO:0046872 metal ion binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0030628 pre-mRNA 3'-splice site binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G021030.1CmoCh01G021030.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 83..139
score: 1.
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 44..146
score: 11
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 150..174
score: 1.4E-4coord: 14..38
score: 2.
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 13..39
score: 0.0068coord: 148..174
score: 0.
IPR000571Zinc finger, CCCH-typePROFILEPS50103ZF_C3H1coord: 12..40
score: 13.065coord: 148..175
score: 11
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 73..142
score: 1.
IPR009145U2 auxiliary factor small subunitPRINTSPR01848U2AUXFACTORcoord: 37..57
score: 9.1E-65coord: 103..125
score: 9.1E-65coord: 75..90
score: 9.1E-65coord: 165..177
score: 9.1E-65coord: 18..37
score: 9.1E-65coord: 130..154
score: 9.1
IPR009145U2 auxiliary factor small subunitPANTHERPTHR12620U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNITcoord: 1..274
score: 3.1E
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 44..145
score: 1.5
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 77..149
score: 1.49
NoneNo IPR availablePANTHERPTHR12620:SF15SUBFAMILY NOT NAMEDcoord: 1..274
score: 3.1E