CSPI04G27320 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G27320
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionSplicing factor U2af small subunit A
LocationChr4 : 24022258 .. 24024226 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGAAAATAACATGTCTGCTATGCGAGAACATAAGCAATACCTTTCCGGAGTCCTTGATTTACGAATTACGCATCTGGGATCCATTTCTCCAATTTAGGGTTTCTTTTCTCCTGGGCTCCAATTGAGCTTTCGCTTCCGTTTTCCCTTTTCATTTTTAATTTCAATTCCACTTCTTCTTCATCCAATTCATTTCAATCAGGTCGACTATTGTTGCTGAAATCTCTCTCATCTGATCTCAAATGGCTGAACACTTGGCCTCAATATTTGGCACCGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGCCATGGAGATCGCTGCTCTCGCCTCCACAACCGCCCTACTATTTCCCCTACTCTTCTCCTATCCAACATGTACCAGCGCCCCGACATGATCACCCCGGGCGTTGATGCTCAGGGCCAGCCCATAGATCCCCGAAAGATTCAGGAACACTTCGAAGATTTCTACGAAGACATTTATGAGGAACTTGGCAAGTTCGGTGAGATCGAGAGCCTTAATGTCTGTGATAATCTCGCCGACCACATGATTGGAAATGTCTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCCGCCGCACTCCAAGCCTTGCAAGGGCGGTTTTACTCAGGTCGACCCATTATCGCAGATTTTTCTCCCGTAACTGATTTCCGCGAAGCCACGTGCCGCCAGTACGAGGAGAATAATTGCAACCGAGGGGGATATTGCAATTTTATGCACGTAAAGATGATTGGGAAGGATTTGAGAAGGAAGCTGTTCGGTAGGTACCGGGGATATAGGGCGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAAGAGCACGATAGGCGTGAAAGGGATTACAGAGACCGTGACTATCGCGGAAACGGACGGAGCAAGGAGCGTCATGATAGGGATGGGGGAAGGAGAAGACAAGGTAGCCCCAGACGAAGCCGAAGCCGAAGCCCTGTCATTGTGAGAGAAGGTAGCGAAGAGCGACGTGCCCGTATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCAGTGACGTCTTCGTATTTTTTCTTTCTTTCTATTTTGGTAATTGTTCTGCGCTCTCTCTGTCATTTAATTATGTACCTTACCCTTACTTACACCACATAATTCTGCCTGAATAGGAAGTAGAAATCTTTTCTAGACAAAGCCGTGGGTGTGATATCAAGTAGAGTAGCCTTTTTGGTTAACTTTCTAGTTGATATTGTCGGATATGATCTCTTAACTATTTCTATCTGCACTTCATCATCCATATGCTTTAACTTGTGCCTCATCTTACCCATTTAAAACCCATCATTTCCTATCCACTCTCCTGCTTGAGTTTCTGACCCAGGCAACAACAAGATGGGAAACTCATTGAGTGTGCTATGCAAATTGATGATTGTTGAATAAGGCATCTATCTGCGTATGCCCTTGTTACTTCTATATCTAACTATTCTATTTGTACAACTACGCTGACTTGAGGCATTGTGTTAGTTACTATAGTGAATGAGTTTTAATAGTTTTTGTTTGGTGTGCAAACTATCTTAGGATAGTCATTATTATTCATGTTTGAGTTGCAAGATCATACACTGAAGCAAAGAGGGGGTTTGATTATAATAGTAATGTTATATTTAATTGTAGATTATAATAGTTAAAAATACCTATTACTGTAATTGGATCACTAAACATGGGTGGGTTGTAATAGCCCACCCATGAAGTTCAAGTTAGTAAGGTTGTACATGATAAATTGATTGGAGTATAGTGGAATTGAACAAATTATGGCCTTGGGTTTTCAAAGTACTAAATAACAAATTAAGGTGAGCATAACTACTCATCCGTTTGTTGTACTAAAAAAGAAATGGAGGAAACAGAACAGCGATGGCTTTGTGAATGAGGGAGAGGAAGATTGTTGTACTAAAAAAGAAATGGA

mRNA sequence

ATGGCTGAACACTTGGCCTCAATATTTGGCACCGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGCCATGGAGATCGCTGCTCTCGCCTCCACAACCGCCCTACTATTTCCCCTACTCTTCTCCTATCCAACATGTACCAGCGCCCCGACATGATCACCCCGGGCGTTGATGCTCAGGGCCAGCCCATAGATCCCCGAAAGATTCAGGAACACTTCGAAGATTTCTACGAAGACATTTATGAGGAACTTGGCAAGTTCGGTGAGATCGAGAGCCTTAATGTCTGTGATAATCTCGCCGACCACATGATTGGAAATGTCTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCCGCCGCACTCCAAGCCTTGCAAGGGCGGTTTTACTCAGGTCGACCCATTATCGCAGATTTTTCTCCCGTAACTGATTTCCGCGAAGCCACGTGCCGCCAGTACGAGGAGAATAATTGCAACCGAGGGGGATATTGCAATTTTATGCACGTAAAGATGATTGGGAAGGATTTGAGAAGGAAGCTGTTCGGTAGGTACCGGGGATATAGGGCGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAAGAGCACGATAGGCGTGAAAGGGATTACAGAGACCGTGACTATCGCGGAAACGGACGGAGCAAGGAGCGTCATGATAGGGATGGGGGAAGGAGAAGACAAGGTAGCCCCAGACGAAGCCGAAGCCGAAGCCCTGTCATTGTGAGAGAAGGTAGCGAAGAGCGACGTGCCCGTATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCAGTGA

Coding sequence (CDS)

ATGGCTGAACACTTGGCCTCAATATTTGGCACCGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGCCATGGAGATCGCTGCTCTCGCCTCCACAACCGCCCTACTATTTCCCCTACTCTTCTCCTATCCAACATGTACCAGCGCCCCGACATGATCACCCCGGGCGTTGATGCTCAGGGCCAGCCCATAGATCCCCGAAAGATTCAGGAACACTTCGAAGATTTCTACGAAGACATTTATGAGGAACTTGGCAAGTTCGGTGAGATCGAGAGCCTTAATGTCTGTGATAATCTCGCCGACCACATGATTGGAAATGTCTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCCGCCGCACTCCAAGCCTTGCAAGGGCGGTTTTACTCAGGTCGACCCATTATCGCAGATTTTTCTCCCGTAACTGATTTCCGCGAAGCCACGTGCCGCCAGTACGAGGAGAATAATTGCAACCGAGGGGGATATTGCAATTTTATGCACGTAAAGATGATTGGGAAGGATTTGAGAAGGAAGCTGTTCGGTAGGTACCGGGGATATAGGGCGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAAGAGCACGATAGGCGTGAAAGGGATTACAGAGACCGTGACTATCGCGGAAACGGACGGAGCAAGGAGCGTCATGATAGGGATGGGGGAAGGAGAAGACAAGGTAGCCCCAGACGAAGCCGAAGCCGAAGCCCTGTCATTGTGAGAGAAGGTAGCGAAGAGCGACGTGCCCGTATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCAGTGA
Homology
[Close]
BLAST of CSPI04G27320 vs. Swiss-Prot
Match: U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=1 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 6.3e-127
Identity = 238/283 (84.10%), Postives = 252/283 (89.05%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNVCDNLADHMIGNVYV F+EED
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
            AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRKLFGRYRG--YRASRSRSRSLSPRNRKEHDR-RER-DYRDRDYRGNGR----SKERHD 240
           RRKLFGRYR    R SRSRSRS+SPR ++EH R RER D RDRD  GNG+      ERHD
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 241 RD-GGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREE 275
           RD GGRRR GSP+  RSRSP  VREGSEERRARIEQWNRER+E
Sbjct: 241 RDGGGRRRHGSPK--RSRSPRNVREGSEERRARIEQWNRERDE 281

[Close]
BLAST of CSPI04G27320 vs. Swiss-Prot
Match: U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 1.0e-124
Identity = 238/294 (80.95%), Postives = 259/294 (88.10%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+CDNLADHMIGNVYVQF+EED
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++L
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RRKLFGRY-RGYR---ASRSRSRSLSPRNRKEHDR-----RERDYRDRD---YR-GNGR- 240
           RRKLFGRY R YR    SRSRSRS+SPRN++++DR     RE  +RDRD   YR G+G+ 
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKR 240

Query: 241 ---SKERHDRDGGR-RRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ 277
                ER +RDG R RRQ SP+  R  SP   REGSEERRARIEQWNREREEK+
Sbjct: 241 SSERSERQERDGSRGRRQASPK--RGGSPGGGREGSEERRARIEQWNREREEKE 292

[Close]
BLAST of CSPI04G27320 vs. Swiss-Prot
Match: U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 3.3e-112
Identity = 223/308 (72.40%), Postives = 244/308 (79.22%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPT+SPT++L+NMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDP K+QEHFEDFYEDIYEEL KFGE+E+LNVCDNLADHMIGNVYVQFREE+
Sbjct: 61  GVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEE 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QA AA  ALQGRFYSGRPII ++SPVTDFREATCRQ+EEN+CNRGGYCNFMHVK IG++L
Sbjct: 121 QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL 180

Query: 181 RRKLFGRYRGYRASRSRSRSLSPRNRK-----EHDRRERD-------------------- 240
           RRKL+G     R S  RSRS SPR+R+     +  RRERD                    
Sbjct: 181 RRKLYGGRS--RRSHGRSRSPSPRHRRGNRDRDDFRRERDGYRGGGDGYRGGGGGGGGDG 240

Query: 241 YRDRD-YRGNGRSKER-----HDR--DGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQ 276
           YR  D YRG G    R     +DR  DGGRRR GSP R R+RSPV  RE SEERRA+IEQ
Sbjct: 241 YRGGDSYRGGGGGGRRGGGSRYDRYDDGGRRRHGSPPR-RARSPV--RESSEERRAKIEQ 300

[Close]
BLAST of CSPI04G27320 vs. Swiss-Prot
Match: U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 5.9e-109
Identity = 214/295 (72.54%), Postives = 236/295 (80.00%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN+P++SPTLLLSNMY RPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           G+DAQG PIDP KIQ  FEDFYEDI+EEL K+GEIESL+VCDN ADHMIGNVYVQFREED
Sbjct: 61  GIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAA ALQAL GR+YSGRPII +FSPV+DFREATCRQYEEN+CNRGGYCNFMHVK IG+DL
Sbjct: 121 QAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIGRDL 180

Query: 181 RRKLFGRYRGYRASRSRSRSLSP---RNRKEHDRRE----RDYRD------RDYR--GNG 240
           R++LFG     R S S  RS SP     R+++DRR     RD+ D       DY   G+ 
Sbjct: 181 RKRLFGHLHRSRRSHSHGRSRSPSPYHYRRDYDRRSSSRSRDHDDYYRGGSHDYYRGGSR 240

Query: 241 RSKERH----DRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ 277
           RS ERH    D DG RRR     RSR+RSPV  R+GSEERRA+IEQWNRERE  Q
Sbjct: 241 RSSERHRSSYDSDGSRRRH----RSRTRSPV--RDGSEERRAQIEQWNREREAAQ 289

[Close]
BLAST of CSPI04G27320 vs. Swiss-Prot
Match: U2AF1_BOVIN (Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 3.6e-66
Identity = 132/250 (52.80%), Postives = 171/250 (68.40%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P   + 
Sbjct: 1   MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELG-KFGEIESLNVCDNLADHMIGNVYVQFREE 120
             D     +   ++QEH+++F+E+++ E+  K+GE+E +NVCDNL DH++GNVYV+FR E
Sbjct: 61  SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120

Query: 121 DQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKD 180
           + A  A+  L  R+++G+PI A+ SPVTDFREA CRQYE   C RGG+CNFMH+K I ++
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180

Query: 181 LRRKLFGRYRGYRASRSRSRSLSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRR 240
           LRR+L+GR R    SRSRSR          +RR R  RDR   G G         GG  R
Sbjct: 181 LRRELYGRRRKKHRSRSRSR----------ERRSRS-RDRGRGGGG--------GGGGGR 231

Query: 241 QGSPRRSRSR 250
           +   RRSR R
Sbjct: 241 ERDRRRSRDR 231

[Close]
BLAST of CSPI04G27320 vs. TrEMBL
Match: A0A0A0L4P8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664540 PE=4 SV=1)

HSP 1 Score: 554.3 bits (1427), Expect = 8.4e-155
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRASRSRSRSLSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQ 240
           RRKLFGRYRGYRASRSRSRSLSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQ
Sbjct: 181 RRKLFGRYRGYRASRSRSRSLSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQ 240

Query: 241 GSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ 277
           GSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ
Sbjct: 241 GSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ 276

[Close]
BLAST of CSPI04G27320 vs. TrEMBL
Match: A0A067KY41_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08020 PE=4 SV=1)

HSP 1 Score: 491.9 bits (1265), Expect = 5.1e-136
Identity = 251/284 (88.38%), Postives = 264/284 (92.96%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDI+EEL KFGEIESLNVCDNLADHMIGNVYVQFREE+
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIESLNVCDNLADHMIGNVYVQFREEE 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQ+EENNCNRGGYCNFMHVK+IG+DL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDL 180

Query: 181 RRKLFGRYRGYRASRSRSRSLSPRNR----KEHDRRERDYRDRDYRGNGR----SKERHD 240
           RRKLFGRYRGYR SRSRSRS SP++R    +++DRR+RDYRDRDYRGNGR      ER++
Sbjct: 181 RRKLFGRYRGYRGSRSRSRSASPKHRRDKDRDNDRRDRDYRDRDYRGNGRRSGERNERYE 240

Query: 241 RDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ 277
           RD GRRR GSPRRSRS     VREGSEERRARIEQWNREREEKQ
Sbjct: 241 RDSGRRRHGSPRRSRSP----VREGSEERRARIEQWNREREEKQ 280

[Close]
BLAST of CSPI04G27320 vs. TrEMBL
Match: B9R8U8_RICCO (U2 snrnp auxiliary factor, small subunit, putative OS=Ricinus communis GN=RCOM_1602290 PE=4 SV=1)

HSP 1 Score: 491.5 bits (1264), Expect = 6.7e-136
Identity = 254/279 (91.04%), Postives = 261/279 (93.55%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDI+EELGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIFEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQ+EENNCNRGGYCNFMHVK+IG+DL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDL 180

Query: 181 RRKLFGRYRGYRASRSRSRSLSP---RNRKEHDRRERDYRDRDYRGNG-RSKERHDRDGG 240
           RRKLFGRYRGYRASRSRSRS+SP   R  K +DRRERDYRDRDYRGNG RS +RHD    
Sbjct: 181 RRKLFGRYRGYRASRSRSRSVSPSRHRREKSNDRRERDYRDRDYRGNGRRSGDRHD---- 240

Query: 241 RRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEK 276
           RRR GSPRRSRS     VREGSEERRARIEQWNREREEK
Sbjct: 241 RRRHGSPRRSRSP----VREGSEERRARIEQWNREREEK 271

[Close]
BLAST of CSPI04G27320 vs. TrEMBL
Match: B9H5X4_POPTR (U2 snRNP auxiliary factor small subunit family protein OS=Populus trichocarpa GN=POPTR_0005s27940g PE=4 SV=1)

HSP 1 Score: 486.9 bits (1252), Expect = 1.7e-134
Identity = 249/279 (89.25%), Postives = 261/279 (93.55%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSN Y RPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNTYHRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQP+DP KIQEHFEDFYEDI+EEL KFGEIE+LNVCDNLADHMIGNVYVQF+EED
Sbjct: 61  GVDAQGQPLDPHKIQEHFEDFYEDIFEELSKFGEIENLNVCDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQ+LQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK+IGKDL
Sbjct: 121 QAAAALQSLQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLIGKDL 180

Query: 181 RRKLFGRYRGYRASRSRSRSLSPRNR-KEHDRRERDY--RDRDYRGNGRSKERHDRDGGR 240
           RRKLFGRYRGYR SRSRSRS+SPR R +++DRRERDY  RDRDYRGNGR   R+DRDGGR
Sbjct: 181 RRKLFGRYRGYRVSRSRSRSVSPRRRDRDYDRRERDYRDRDRDYRGNGR---RNDRDGGR 240

Query: 241 RRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ 277
           +R GSPRRSRS     VREGSEERRARIEQWNREREEKQ
Sbjct: 241 KRHGSPRRSRSP----VREGSEERRARIEQWNREREEKQ 272

[Close]
BLAST of CSPI04G27320 vs. TrEMBL
Match: A0A059BWL0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03613 PE=4 SV=1)

HSP 1 Score: 481.9 bits (1239), Expect = 5.3e-133
Identity = 248/285 (87.02%), Postives = 265/285 (92.98%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDI+EEL KFGEIESLNVCDNLADHMIGNVYVQF+EED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIESLNVCDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAAL ALQGRFYSGRPIIADFSPVTDFREATCRQ+EENNCNRGGYCNFMHVKMIG++L
Sbjct: 121 QAAAALHALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKMIGREL 180

Query: 181 RRKLFGR--YRGYRASRSRSRSLSP-RNRKEHDRRERDYRDRDYRGNGR-----SKERHD 240
           RR+LFGR  YRGYR +RSRSRS+SP R+R+EHDRRER+++DRDYRGNGR       ++H+
Sbjct: 181 RRRLFGRYSYRGYRGARSRSRSMSPTRHRREHDRREREHKDRDYRGNGRRGSGERYDKHE 240

Query: 241 RD-GGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ 277
           RD GGRRR GSPRRSRS     VREGSEERRARIEQWNREREE+Q
Sbjct: 241 RDGGGRRRHGSPRRSRSP----VREGSEERRARIEQWNREREERQ 281

[Close]
BLAST of CSPI04G27320 vs. TAIR10
Match: AT5G42820.2 (AT5G42820.2 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 454.9 bits (1169), Expect = 3.5e-128
Identity = 238/283 (84.10%), Postives = 252/283 (89.05%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNVCDNLADHMIGNVYV F+EED
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
            AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRKLFGRYRG--YRASRSRSRSLSPRNRKEHDR-RER-DYRDRDYRGNGR----SKERHD 240
           RRKLFGRYR    R SRSRSRS+SPR ++EH R RER D RDRD  GNG+      ERHD
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 241 RD-GGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREE 275
           RD GGRRR GSP+  RSRSP  VREGSEERRARIEQWNRER+E
Sbjct: 241 RDGGGRRRHGSPK--RSRSPRNVREGSEERRARIEQWNRERDE 281

[Close]
BLAST of CSPI04G27320 vs. TAIR10
Match: AT1G27650.1 (AT1G27650.1 U2 snRNP auxiliary factor small subunit, putative)

HSP 1 Score: 447.6 bits (1150), Expect = 5.6e-126
Identity = 238/294 (80.95%), Postives = 259/294 (88.10%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+CDNLADHMIGNVYVQF+EED
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++L
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RRKLFGRY-RGYR---ASRSRSRSLSPRNRKEHDR-----RERDYRDRD---YR-GNGR- 240
           RRKLFGRY R YR    SRSRSRS+SPRN++++DR     RE  +RDRD   YR G+G+ 
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKR 240

Query: 241 ---SKERHDRDGGR-RRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ 277
                ER +RDG R RRQ SP+  R  SP   REGSEERRARIEQWNREREEK+
Sbjct: 241 SSERSERQERDGSRGRRQASPK--RGGSPGGGREGSEERRARIEQWNREREEKE 292

[Close]
BLAST of CSPI04G27320 vs. TAIR10
Match: AT1G10320.1 (AT1G10320.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 122.9 bits (307), Expect = 3.2e-28
Identity = 100/305 (32.79%), Postives = 154/305 (50.49%), Query Frame = 1 

Query: 9   FGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQP 68
           FGTE+D+ +CPF+ K GACR G RCSR+H  P  S TLL+ NMY  P  IT   D +G  
Sbjct: 237 FGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPG-ITWEQD-EGLE 296

Query: 69  IDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREEDQAAAALQA 128
               + +  +E+FYED++ E  K+GE+ +  VC N + H+ GNVYV +R  + A  A Q+
Sbjct: 297 YTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQS 356

Query: 129 LQGRFYSGRPIIADFSPVTDFREATCRQYEEN---NCNRGGYCNFMH-VKMIGKDLR--- 188
           + GR+++G+ +  +F  ++ ++ A C +Y ++    C+RG  CNF+H  +  G D     
Sbjct: 357 INGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIHCFRNPGGDYEWAD 416

Query: 189 -------------RKLFG----RYRGYRASRSRSRSLSPRNRKEH---DRRERDYRDRDY 248
                          LFG    ++  + +S S + S+S  +   H    RR R  RD D+
Sbjct: 417 HDRPPPRFWIHKMTSLFGYSDEKHMEHESSGSLNDSISDLSTDSHRQPSRRSRS-RDHDH 476

Query: 249 RGNG-----RSKERHDRDGGRRRQGSPRR----------SRSRSPVIVREGSEERRARIE 272
              G     RS++ H       R+   RR          S SR   + RE  +ERR   +
Sbjct: 477 ANVGSTPSYRSRKYHGDTQDSTREDKLRRHAENCHDGDDSPSRDGSLEREMYKERRYAKD 536

[Close]
BLAST of CSPI04G27320 vs. TAIR10
Match: AT3G44785.1 (AT3G44785.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 105.1 bits (261), Expect = 6.9e-23
Identity = 48/73 (65.75%), Postives = 57/73 (78.08%), Query Frame = 1 

Query: 1  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
          M EHLASI+GTEKDRVNCPFYFKIG CR+GDRCSRL+ +P+ISPTLLLSN YQ+  +   
Sbjct: 1  MVEHLASIYGTEKDRVNCPFYFKIGVCRNGDRCSRLYTKPSISPTLLLSNTYQQGRLKQF 60

Query: 61 GVDAQGQPIDPRK 74
              Q +  DP+K
Sbjct: 61 LDPVQSREKDPKK 73

[Close]
BLAST of CSPI04G27320 vs. NCBI nr
Match: gi|449455651|ref|XP_004145565.1| (PREDICTED: splicing factor U2af small subunit B-like [Cucumis sativus])

HSP 1 Score: 554.3 bits (1427), Expect = 1.2e-154
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRASRSRSRSLSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQ 240
           RRKLFGRYRGYRASRSRSRSLSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQ
Sbjct: 181 RRKLFGRYRGYRASRSRSRSLSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQ 240

Query: 241 GSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ 277
           GSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ
Sbjct: 241 GSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ 276

[Close]
BLAST of CSPI04G27320 vs. NCBI nr
Match: gi|659105117|ref|XP_008453027.1| (PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo])

HSP 1 Score: 543.5 bits (1399), Expect = 2.1e-151
Identity = 270/276 (97.83%), Postives = 273/276 (98.91%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRASRSRSRSLSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQ 240
           RRKLFGRYRGYR SRSRSRSLSPRNRKE+DRRERDYR+R+YRGNGRSKERHDRDGGRRR 
Sbjct: 181 RRKLFGRYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKERHDRDGGRRRH 240

Query: 241 GSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ 277
           GSPRRSRSRSPVI REGSEERRARIEQWNREREEKQ
Sbjct: 241 GSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 276

[Close]
BLAST of CSPI04G27320 vs. NCBI nr
Match: gi|694394530|ref|XP_009372655.1| (PREDICTED: splicing factor U2af small subunit B-like [Pyrus x bretschneideri])

HSP 1 Score: 498.0 bits (1281), Expect = 1.0e-137
Identity = 254/286 (88.81%), Postives = 271/286 (94.76%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVD+QGQP+DPRKIQEHFEDFYEDI+EEL KFGEIESLNVCDNLADHMIGNVYVQF+EED
Sbjct: 61  GVDSQGQPLDPRKIQEHFEDFYEDIFEELTKFGEIESLNVCDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFY+GRPIIADFSPVTDFREATCRQ+EEN+CNRGGYCNFMHVK+IG++L
Sbjct: 121 QAAAALQALQGRFYNGRPIIADFSPVTDFREATCRQFEENSCNRGGYCNFMHVKLIGREL 180

Query: 181 RRKLFGRYRGYRASRSRSRSLSPRNRK----EHDRRERDYRDRDYRGNG-RSKERH---- 240
           RR+LFGRYRGYR SRSRSRSLSPR+R     ++D+RERDYRDRDYRGNG RSK+R+    
Sbjct: 181 RRRLFGRYRGYRISRSRSRSLSPRHRSRDYDKYDKRERDYRDRDYRGNGRRSKDRYDRDR 240

Query: 241 DRDGGRRRQG-SPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ 277
           DRDGGRRR G SPRRSRSRSPV VREGSEERRARIEQWNREREEKQ
Sbjct: 241 DRDGGRRRHGSSPRRSRSRSPVAVREGSEERRARIEQWNREREEKQ 286

[Close]
BLAST of CSPI04G27320 vs. NCBI nr
Match: gi|802604291|ref|XP_012073547.1| (PREDICTED: splicing factor U2af small subunit B-like [Jatropha curcas])

HSP 1 Score: 491.9 bits (1265), Expect = 7.4e-136
Identity = 251/284 (88.38%), Postives = 264/284 (92.96%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDI+EEL KFGEIESLNVCDNLADHMIGNVYVQFREE+
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIESLNVCDNLADHMIGNVYVQFREEE 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQ+EENNCNRGGYCNFMHVK+IG+DL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDL 180

Query: 181 RRKLFGRYRGYRASRSRSRSLSPRNR----KEHDRRERDYRDRDYRGNGR----SKERHD 240
           RRKLFGRYRGYR SRSRSRS SP++R    +++DRR+RDYRDRDYRGNGR      ER++
Sbjct: 181 RRKLFGRYRGYRGSRSRSRSASPKHRRDKDRDNDRRDRDYRDRDYRGNGRRSGERNERYE 240

Query: 241 RDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ 277
           RD GRRR GSPRRSRS     VREGSEERRARIEQWNREREEKQ
Sbjct: 241 RDSGRRRHGSPRRSRSP----VREGSEERRARIEQWNREREEKQ 280

[Close]
BLAST of CSPI04G27320 vs. NCBI nr
Match: gi|1000986733|ref|XP_015575795.1| (PREDICTED: splicing factor U2af small subunit B [Ricinus communis])

HSP 1 Score: 491.5 bits (1264), Expect = 9.6e-136
Identity = 254/279 (91.04%), Postives = 261/279 (93.55%), Query Frame = 1 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDI+EELGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIFEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQ+EENNCNRGGYCNFMHVK+IG+DL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDL 180

Query: 181 RRKLFGRYRGYRASRSRSRSLSP---RNRKEHDRRERDYRDRDYRGNG-RSKERHDRDGG 240
           RRKLFGRYRGYRASRSRSRS+SP   R  K +DRRERDYRDRDYRGNG RS +RHD    
Sbjct: 181 RRKLFGRYRGYRASRSRSRSVSPSRHRREKSNDRRERDYRDRDYRGNGRRSGDRHD---- 240

Query: 241 RRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEK 276
           RRR GSPRRSRS     VREGSEERRARIEQWNREREEK
Sbjct: 241 RRRHGSPRRSRSP----VREGSEERRARIEQWNREREEK 271

The following BLAST results are available for this feature:
BLAST of CSPI04G27320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
U2AFB_ARATH6.3e-12784.10Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=1 SV=... [more]
U2AFA_ARATH1.0e-12480.95Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=... [more]
U2AFB_ORYSJ3.3e-11272.40Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica GN=U2AF35B ... [more]
U2AFA_ORYSJ5.9e-10972.54Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A ... [more]
U2AF1_BOVIN3.6e-6652.80Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2 SV=1[more]
BLAST of CSPI04G27320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4P8_CUCSA8.4e-155100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664540 PE=4 SV=1[more]
A0A067KY41_JATCU5.1e-13688.38Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08020 PE=4 SV=1[more]
B9R8U8_RICCO6.7e-13691.04U2 snrnp auxiliary factor, small subunit, putative OS=Ricinus communis GN=RCOM_1... [more]
B9H5X4_POPTR1.7e-13489.25U2 snRNP auxiliary factor small subunit family protein OS=Populus trichocarpa GN... [more]
A0A059BWL0_EUCGR5.3e-13387.02Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03613 PE=4 SV=1[more]
BLAST of CSPI04G27320 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G42820.23.5e-12884.10 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT1G27650.15.6e-12680.95 U2 snRNP auxiliary factor small subunit, putative[more]
AT1G10320.13.2e-2832.79 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT3G44785.16.9e-2365.75 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
BLAST of CSPI04G27320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449455651|ref|XP_004145565.1|1.2e-154100.00PREDICTED: splicing factor U2af small subunit B-like [Cucumis sativus][more]
gi|659105117|ref|XP_008453027.1|2.1e-15197.83PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo][more]
gi|694394530|ref|XP_009372655.1|1.0e-13788.81PREDICTED: splicing factor U2af small subunit B-like [Pyrus x bretschneideri][more]
gi|802604291|ref|XP_012073547.1|7.4e-13688.38PREDICTED: splicing factor U2af small subunit B-like [Jatropha curcas][more]
gi|1000986733|ref|XP_015575795.1|9.6e-13691.04PREDICTED: splicing factor U2af small subunit B [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR000571Znf_CCCH
IPR003954RRM_dom_euk
IPR009145U2AF_small
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0046872metal ion binding
GO:0003723RNA binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0089701U2AF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007067 mitotic nuclear division
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0048573 photoperiodism, flowering
cellular_component GO:0089701 U2AF
cellular_component GO:0005681 spliceosomal complex
molecular_function GO:0046872 metal ion binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0030628 pre-mRNA 3'-splice site binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G27320.1CSPI04G27320.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 83..139
score: 1.
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 44..146
score: 11
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 14..38
score: 2.5E-7coord: 150..174
score: 1.
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 13..39
score: 0.0068coord: 148..174
score: 0.
IPR000571Zinc finger, CCCH-typePROFILEPS50103ZF_C3H1coord: 148..175
score: 11.413coord: 12..40
score: 13
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 73..142
score: 1.
IPR009145U2 auxiliary factor small subunitPRINTSPR01848U2AUXFACTORcoord: 165..177
score: 6.9E-65coord: 75..90
score: 6.9E-65coord: 103..125
score: 6.9E-65coord: 18..37
score: 6.9E-65coord: 37..57
score: 6.9E-65coord: 130..154
score: 6.9
IPR009145U2 auxiliary factor small subunitPANTHERPTHR12620U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNITcoord: 1..274
score: 2.4E
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 44..145
score: 9.0
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 77..149
score: 1.36
NoneNo IPR availableunknownCoilCoilcoord: 258..276
scor
NoneNo IPR availablePANTHERPTHR12620:SF15SUBFAMILY NOT NAMEDcoord: 1..274
score: 2.4E