CmoCh01G014190 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G014190
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DNA topoisomerase 2-binding protein 1-A
Location	Cmo_Chr01 : 11136871 .. 11143091 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTCTCTCTCTCGTCCAAGTTTGATCGAGGGAGAAAGTTGACGAAGCAACGGCCGAGATGCTGAATCCGAAGCCCTTCGCCGGAGGCAACGTGTTCGTGTCCTGCAATCTTGTTGCTCAAGAGATATTTGATGCTCTGAAGCAGAATGGGGCTGACGTCTTCATCTGTTGCGATCCTTCTCGAAACGGGCGTAATGATTATAATGTTATCTCTCTGTCGATCATGTATGAAATGTTTCATCGGTTTTGTGTTTGATTTCTCATTCTTCTTCGTATTGGCTATGGTTTTTTGGTTTTTGATTCTGGTTTGCAGGAAAATTTCGAGGATCTTTGCGCGAAGGTGTGCAATTTTTTAGGTATGGTTCTTGTAGGTTTAATTTTTAGTTTCGACCTCTTCTTCTCCTTCTTCTGCGGGGATAGGGCCGGAGTTCAGTTTTTTGACAGACGAGTGAGACTTGTAGGAAATTGGAGTTCTCGATTATTTGTTCAATGCGATACTTACTGAATTACTGTTATAGCTTTCTAATGAACATAAATAGTAGCCCGGTGACCATGCAATATGTCTCCATTGTCCGCTTGCATTTCGAATTGGCATGCCTAGTTGTTTGAAATTATCATTTCAGTCCGTCGCCTGGGACCTGGTGCTCATATCGCATTGCAATTTATTGCTATAGAATTGAATTTCTGCTATTGGGGGGGTCCTCAGTGCGTGCCTTCATGTGCAAAAGAGTACAGACCGCTTCCTCAACAGGATTTTACTTGTTGCCTTGCTATGGATGGTGTGAAAATTCTGGCATCCGGTTTTCAGGCGGATGAAAAGCTACGTTGCTAATGTTCCTATTTCCCCGTTTTTATAGAAGCTTGTTTCTAAATTATAATACAAAATTGCAGGTTTAGTTAGGGAAGTTAGTTACTGCAATGGGAGGAGTATTGCATACAAAAGCATCTCTAGATTCACCTTCATTGTCGTGAAGAATGTCTTGGCTGCAAAATACAAGGTTGTGATGCTTGAATTTACCGTTTTATTGACGTGATGTATACGTGTACATAGGTTTTTTTATCTGTGTAAAGATCCCCCAAATATTTATACAAAATTCTAAATTTCTGACAATTATAGTTTAAAATAAGAAAGAGAATGGATGGAAAGACGGATCTTGAAAGATGATGGTTTTGAGGTGGGGAGTGGAGGTGGGAAAGGGAAAGGATTAGTGATAGTTGAAACATTAATTTTGTTTCAAATGCAAAGGCAACTCCGTGAAATAGCTGCACTTCTATAACCATTAAGATTCCTAATTATTTGAAACACTACAGCAATCCAGGGCCTAGAATAGAAGCGATGATATGGGAAATACTGATGATGTCAGAGCCTTGACTATTACTAGAAGGATTTATGAGGAAGGGATTTTATTATACCAAAAGCATTATATAGCAATCATTATGCAGCACAGTTGTTATCTTAACACGAGGCATTTATGAATATAATCTTCAAAATCTTCTGCATTCCACATAATTGATGTAACATAGTACGTAAGTGAGAATAGCTATTGATATCTCGCAGAAAGCTGTATCTTGTTCAACAGTTCCAGCTCCATAACTTTGAAAGTAAGTCTTCGGAGTGTATATAATTCTAAATCAGTTCCTTTGACCTCATTGTATCTCAAGTATATTCCCATCCTGTTAACAGATTGATTTAGAAAAGTTCAAGATAATTCCAATGTCATTTAGCATATGAAAAGGGTACCATTCCTTTTAGCATATGAAACTATGGCTTTGACAAATTTATTCATTTTATTGATGATATATATTCTGACGATCATATTTGAATTCTCTCCTTGACAGCTGAAATTGTTGAATGGATAAATCAAAAGGGGGAGGGGAGATTGTTGAGGACCACAAGAGAAACGACATCAAAAATCTTCTGTAGTAACTTTACATGTTCCTGATGTTGCTGCTGCAATTGAGAACTTGTTGGAGCAGACAAGGTAAAATATGGATAGAGCTTTAATTCCATTACTTCATTTCAATATATTGTTCTCTCGGATCCTTCTGTTCCACTTTCTTTTTAAGATTCATGATCGGAAGTCACCTGGAAAGACTTGCTTCGACAAAAGTGTATCCTTTTATTGGGATCAATGCCTTTTATGTTTAAATATTTGATTTCTTTTGTACTTGGGTTAATCCGATAAGGTACCAGATTTTCCCGCCTGATTGTTCCGTCATTGGTCTGGTGAATTGTTTCCTAGAACAAAAAAGATTATACTTTCTTTGAGTAGTCATTTTATTTGCAAAATTCAATCATCCCGAATGCTATTCTTAAAACTAGCTTGCAAATAAAATGCAGTAGACTATTTTTCAAACTTGATATTAATCAATACTGTACCCTTTACGTGATTTTGGCATTATGAAAACTTTTCTTCTCTGTTTGGTTTTTAAAAATTTTGTTTGATTTTTCCTTATTGCTCTATAATAAGTTTCATCTTTCTTAGGAAAATATTTCGCTAAAAATATTGGTTAAAAGAGCATTTCACTAAAGAACTCAACCCTGTAAAGCTATACTGAAATCACTCTTAGACTAATAAGTACAAACGCATTTCAGTTTTGTCTTTGTAACTCAGTTAATGAGATTTTTATTTTGCATGATCTCAGAGCTGAAAGAAAAGAAGACGTTAGAATCCTAATACTGGAGATGGGAGCGGAGGCATATATGGTGGTTTTTGTGAAACACAAACCGAGTCTCAGGTGTGTGCATGTGTTTTCTTTGTCATTTATACCTCTATTGCAATTATGTGTGATGAATGTTTGAAAATTGTATCCCTCTCTGTCGACAAGATTTTGGAAGAACTGAATAGATTACAACTCATAAGATTTTAGAATCATCAATGAAGTTGAAATTGATGCTAGGAACAAACTAATTACTTGGCTATTAGTTCCAGCCTGTTAACAGTTCAATGTTTGTAGGTCGTGGGTTATGAAGAGGATTTGTCGGGAATGCAAATACTTATAGACAGAGTTCGAACCTGGAGTAGCATGACTTAAACCTACATCTACCCTTGTAAAATACGTAAAGCCTTAGCCGCACTGTGAAGGTTTGATTAGAGCTTGATATAAGATTTAAATATGCGAAGATATAAAATACGCGTGTTGGTACGCTAGAGAATTAAATGTCAAGAAAATAGGTTTGATTAATTTAATAAGACGCAATGTGCGTTTAAAAAATTAGTCATCAAGAAAGTAAACAAGATTAGTGGAAAAACTGCCTCCAGAAAATATCTTGGGCAAAAAAAGTCCTGCACTGTTTCGATGATTAAAAAAAAATACATATTTTCTAGATTTTGTTTTTAGAAATCAAGGTATATTCATTTTTGGGTTTTAAAAAAAATTAAAAAGTTTCTTAAATTGTAGTTTCATGAACTGGGTAATTACATGAATTCATCAGATAAATACATAGTGTATGTATATATTTCTATTTATTTATTTATGTAGGGAGAGAATTTGAACTCTGATCTTTGGATTTAAGATTATAGGCTCAATTTGACATTTATATCTTTAATTTATATATTATATGCATTTAAAAAATAACAAAAACTATTCACTCTTTTTAGTACGAAATATAATATTGAAAACAATATTAAATATTGGTCCTTCGGACACCTTACACAACATACAACAATATATGGAGAAACAGCAGCAAATTACAAAAGCAAACACACGCCCCCAAAGGGAGAATGGTTCCCCTTTTGTGTGCGTGTGTGTGTGTGGTGGGGGAATGAGGTGTAGAAAGAAACAGTTGCATTATTCAAATATTGTCACTAATACATGAAAACCCTTGAATGAAAGGCCATCAAGAGAGTGAAGTCCAACAGTCCTTAGATTCATGTCCCTCGCATTGCCCTGACAGCCTGAAACCTTGGTTCCTTTGGAAGGAACTTCTGCTCAGCATAAATCGACATGTAGTCTCCAAACACAAACTTGGGATATCCTTTTTCCACCTCCTGGTTTGCTTTATTCACCAGCTTTGGTGCCGGAGCTATGATGGCTTCCATTGATGGGTTGTAAAACGAAGCAAGGGATCTCCTATTCCCATTTGGGGAGGGCAGAACCCGGTGCCAAACACTCTTGTATCTTCCATTGCTCAGGACCTCAATCTGATCACCTGTGTTGATGACTATGGAGTTCGGCAATGGCTGGACATCTATCCACTGCCCATCTTTCAGGATTTGAAGGCCTCCCACCTCGTCGTCCTGGAAGAGCAAGATGACACCACCAGCATCGGTGTGCGCACGGAGGCCGTTCACCAACTCCGGGTGTGGGCATGGTGGGTAGTGACTGACTTTGGTTCCAAAGAAGGCCTTGTCCAGCCCATCGCCACCATTGAAGGCAGCCTTTATGTATCCCTCAGGTAAACCCAAGTTCTCATCCATCACTGCCATCACCTTTGCAGCTAGCTTCTTCAGCTCCGATCTATACTCTGCCATGGTTTCCCTGCCACAATATTCGTGAGTTGCTTTCAAAACCTACTCTCTGTTTGTAAGAAAATTTGATTGCATGATATATTTTCACGAAAAAGCATAAAGTTTGAAGTGTAGGTGCATGCTTACTTGAAGCCAGGAATGTTGGAGGGCCATTCGTTGTTATCATGGAGAAGGAAGACATCTTCCCAATCAAGATTTTCCAGCTTCTCGCCGCTCTTGCGTTCCAGCAAATCATTCAGGAGCTTCACAGGTTTTGAACTCTTGAAATTCTCCTCTCTTTCCAGCTCGTAGCACTCTGAACAAACCTTCTTCACCCTCTCCAGGAGCTCTTCTGGAATCCCATGGTTCACCAGCTGAAATTCAGGTAACATATATTTTAGTCCACAATATTATAGAACATTTAATTAGCGCTCTTGCATGAAAACATTGACCAACTTGAGTATAGCTCACTCAACTGGTTAAGACATTATATCTCCGATAAAAAGATAGATTCAAATAGCTACCTCTTGAAAAACCGTTACTCAATGAATAGAATAACTGTTAAGTTTGTGCAAACTACCTGAAAGAATCCCCATTCTTCACAGCCATTAGCTATCTGAGCCAATGTCTTGACCCTTTCTTCTCCATCAAGCTTTGAGAAATCAATGACTGGGATTGCCATTAGAATTCGAAAACACTGTATTTTAGGAAGAGAAATTGAGAAGATGGATTAAGATCTTAAGGTGTTGTAGTTGAATAAGAGAGTTTATGTTGGTGGGTTTGGAAAGGAAAGGGCAGTCCCTATTTATAAGGGCTTCCCTCCAACTTGGATGTCAACTCTTTGTTTATTAAATCCCTTTTCTTTTAAAATAAGAGCCCCCCCTTGAAATGGGACGGTGACTTTTTTAGTAAAGAATTGTTCAATAGTCAATGCCCTCTGAAGTTCTACCTCTGTTTGCAACACATTGCTGAAGGCACTCAACTCTACGTGGGGTCCCACACACCCCGTCTTGTAATTAATTAAATCGTTGCCGACTGTTTTGATTGGCTCCAATCTCTTAAATCTTGGAGGCTACCAATCATGGGGCTACCATGGAGAAGTGCATAATCATTTTATAATGATACGATTGCTTGATGAACAAATTTTTATGCTTCAGTTCTTAATCAGCGGTATTATTTTTTAATTCAAGTCTTATTGTTCTAAAATTTATACCATTTTTGTTTGTCATTGTTTAGATTTACTGATACCGATGGTAAACTCGTGGTCGTGGCATAATTCTTGTTAAGCTGGCGAAGTGGAATTACGCACCCCTCAACCGAGGTAGTCTCTAATCCTTCTAAATGTTTATGATATCGTCAAAATTTGAATTTTCTTTTAGGTGGGTTTACTATGCTATCACGTTTAATCAATCAATAGGAAGGGTGTAATCAAGCGTTTTTAAATAGTAAGGGACTAATTTAAAACTTTTTAAAAGTATAGGATTAAATTGAAATATTACCTAAATATTAAGAACTAAAATGTAGCCCTAAATCATTGTCACATGTGGCAAAAACCAAGCAAATGATAATGATATTAATCTTACTTAAAACATAAATCTATGCCGACTACCGTTGATTATGTTGACTTTTGATCTTCTAGGTCATAACTTTGACTCTCACATGGATACGCTTTTGATTATCAATGGTTTACCTAAATATTTAATTACATCTTACACTAATTTGAAGGCATAGTTTGTGGGTTAAGTAAAATAGGCTGCATCGTATCATGGC

mRNA sequence

TCCTCTCTCTCTCGTCCAAGTTTGATCGAGGGAGAAAGTTGACGAAGCAACGGCCGAGATGCTGAATCCGAAGCCCTTCGCCGGAGGCAACGTGTTCGTGTCCTGCAATCTTGTTGCTCAAGAGATATTTGATGCTCTGAAGCAGAATGGGGCTGACGTCTTCATCTGTTGCGATCCTTCTCGAAACGGGCGAAAATTTCGAGGATCTTTGCGCGAAGGTGTGCAATTTTTTAGAATTGAATTTCTGCTATTGGGGGGGTCCTCAGTGCGTGCCTTCATGTGCAAAAGAGTACAGACCGCTTCCTCAACAGGATTTTACTTGTTGCCTTGCTATGGATGGTGTGAAAATTCTGGCATCCGAAAGCTGTATCTTGTTCAACAGTTCCAGCTCCATAACTTTGAAATAACTTTACATGTTCCTGATGTTGCTGCTGCAATTGAGAACTTGTTGGAGCAGACAAGAGCTGAAAGAAAAGAAGACGTTAGAATCCTAATACTGGAGATGGGAGCGGAGGCATATATGGTGGTTTTTGTGAAACACAAACCGAGTCTCAGGCCATCAAGAGAGTGAAGTCCAACAGTCCTTAGATTCATGTCCCTCGCATTGCCCTGACAGCCTGAAACCTTGGTTCCTTTGGAAGGAACTTCTGCTCAGCATAAATCGACATGTAGTCTCCAAACACAAACTTGGGATATCCTTTTTCCACCTCCTGGTTTGCTTTATTCACCAGCTTTGGTGCCGGAGCTATGATGGCTTCCATTGATGGGTTGTAAAACGAAGCAAGGGATCTCCTATTCCCATTTGGGGAGGGCAGAACCCGGTGCCAAACACTCTTGTATCTTCCATTGCTCAGGACCTCAATCTGATCACCTGTGTTGATGACTATGGAGTTCGGCAATGGCTGGACATCTATCCACTGCCCATCTTTCAGGATTTGAAGGCCTCCCACCTCGTCGTCCTGGAAGAGCAAGATGACACCACCAGCATCGGTGTGCGCACGGAGGCCGTTCACCAACTCCGGGTGTGGGCATGGTGGGTAGTGACTGACTTTGGTTCCAAAGAAGGCCTTGTCCAGCCCATCGCCACCATTGAAGGCAGCCTTTATGTATCCCTCAGGTAAACCCAAGTTCTCATCCATCACTGCCATCACCTTTGCAGCTAGCTTCTTCAGCTCCGATCTATACTCTGCCATGGTTTCCCTGCCACAATATTCTGTAGGTGCATGCTTACTTGAAGCCAGGAATGTTGGAGGGCCATTCGTTGTTATCATGGAGAAGGAAGACATCTTCCCAATCAAGATTTTCCAGCTTCTCGCCGCTCTTGCGTTCCAGCAAATCATTCAGGAGCTTCACAGGAGCTCTTCTGGAATCCCATGGTTCACCAGCTGAAATTCAGATTTACTGATACCGATGGTAAACTCGTGGTCGTGGCATAATTCTTGTTAAGCTGGCGAAGTGGAATTACGCACCCCTCAACCGAGGTAGTCTCTAATCCTTCTAAATGTTTATGATATCGTCAAAATTTGAATTTTCTTTTAGGTGGGTTTACTATGCTATCACGTTTAATCAATCAATAGGAAGGGTGTAATCAAGCGTTTTTAAATAGTAAGGGACTAATTTAAAACTTTTTAAAAGTATAGGATTAAATTGAAATATTACCTAAATATTAAGAACTAAAATGTAGCCCTAAATCATTGTCACATGTGGCAAAAACCAAGCAAATGATAATGATATTAATCTTACTTAAAACATAAATCTATGCCGACTACCGTTGATTATGTTGACTTTTGATCTTCTAGGTCATAACTTTGACTCTCACATGGATACGCTTTTGATTATCAATGGTTTACCTAAATATTTAATTACATCTTACACTAATTTGAAGGCATAGTTTGTGGGTTAAGTAAAATAGGCTGCATCGTATCATGGC

Coding sequence (CDS)

ATGCTGAATCCGAAGCCCTTCGCCGGAGGCAACGTGTTCGTGTCCTGCAATCTTGTTGCTCAAGAGATATTTGATGCTCTGAAGCAGAATGGGGCTGACGTCTTCATCTGTTGCGATCCTTCTCGAAACGGGCGAAAATTTCGAGGATCTTTGCGCGAAGGTGTGCAATTTTTTAGAATTGAATTTCTGCTATTGGGGGGGTCCTCAGTGCGTGCCTTCATGTGCAAAAGAGTACAGACCGCTTCCTCAACAGGATTTTACTTGTTGCCTTGCTATGGATGGTGTGAAAATTCTGGCATCCGAAAGCTGTATCTTGTTCAACAGTTCCAGCTCCATAACTTTGAAATAACTTTACATGTTCCTGATGTTGCTGCTGCAATTGAGAACTTGTTGGAGCAGACAAGAGCTGAAAGAAAAGAAGACGTTAGAATCCTAATACTGGAGATGGGAGCGGAGGCATATATGGTGGTTTTTGTGAAACACAAACCGAGTCTCAGGCCATCAAGAGAGTGA

Homology

[Close]

BLAST of CmoCh01G014190 vs. TrEMBL
Match: U5GGF0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s20500g PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-09
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 1


Query: 1  MLNPKPFAGGNVFVSCNLVAQEIFDAL----KQNGADVFICCDPSRNG 45
          MLN +PF G NVF+S NLV  E+FDAL    K NGADVF+CCDPSR+G
Sbjct: 1  MLNTRPFKGANVFISRNLVPPEVFDALLDGLKLNGADVFLCCDPSRHG 48

[Close]

BLAST of CmoCh01G014190 vs. TrEMBL
Match: U5GIX9_POPTR (BRCT domain-containing family protein OS=Populus trichocarpa GN=POPTR_0005s20500g PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-09
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 1


Query: 1  MLNPKPFAGGNVFVSCNLVAQEIFDAL----KQNGADVFICCDPSRNG 45
          MLN +PF G NVF+S NLV  E+FDAL    K NGADVF+CCDPSR+G
Sbjct: 1  MLNTRPFKGANVFISRNLVPPEVFDALLDGLKLNGADVFLCCDPSRHG 48

[Close]

BLAST of CmoCh01G014190 vs. TrEMBL
Match: A0A0A0LB04_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G529590 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 1


Query: 1   MLNPKPFAGGNVFVSCNLVAQEIFDA----LKQNGADVFICCDPSRN 44
           +L PKPF G NVF+S NLVA E+FDA     KQNGA+VF+CCDP++N
Sbjct: 71  ILKPKPFVGANVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPAQN 117

[Close]

BLAST of CmoCh01G014190 vs. TrEMBL
Match: A0A059BWQ3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03843 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-08
Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = 1


Query: 1  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNG 45
          M+  KPF G +VF+S NLV  E+F    DALK NGADVF+CCDPSRNG
Sbjct: 1  MMKTKPFQGASVFMSRNLVPPELFDTLHDALKLNGADVFLCCDPSRNG 48

[Close]

BLAST of CmoCh01G014190 vs. TrEMBL
Match: A0A067KCX3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12150 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.3e-08
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 1


Query: 1  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNG 45
          ML  K F G NVF+S NLV  E+F    DALK NGA+VF+CCDPSRNG
Sbjct: 1  MLKTKTFNGANVFMSRNLVPPEVFDALLDALKHNGAEVFLCCDPSRNG 48

[Close]

BLAST of CmoCh01G014190 vs. TAIR10
Match: AT1G77320.1 (AT1G77320.1 transcription coactivators)

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-08
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1


Query: 7  FAGGNVFVSCNLVAQEIFDAL----KQNGADVFICCDPSRNG 45
          F G NVF+S NLV  E+FD L    K NGA++F+CCDPSR+G
Sbjct: 7  FKGANVFMSRNLVPPEVFDTLLDAFKLNGAEIFLCCDPSRSG 48

[Close]

BLAST of CmoCh01G014190 vs. NCBI nr
Match: gi|659086957|ref|XP_008444199.1| (PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 9.2e-12
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 1


Query: 1  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNG 45
          ML PKPFAG NVFVS NLVA E+F    DALKQNGA+VF+CCDPSRNG
Sbjct: 1  MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNG 48

[Close]

BLAST of CmoCh01G014190 vs. NCBI nr
Match: gi|659086960|ref|XP_008444200.1| (PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X3 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 9.2e-12
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 1


Query: 1  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNG 45
          ML PKPFAG NVFVS NLVA E+F    DALKQNGA+VF+CCDPSRNG
Sbjct: 1  MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNG 48

[Close]

BLAST of CmoCh01G014190 vs. NCBI nr
Match: gi|659086962|ref|XP_008444201.1| (PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X4 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 9.2e-12
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 1


Query: 1  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNG 45
          ML PKPFAG NVFVS NLVA E+F    DALKQNGA+VF+CCDPSRNG
Sbjct: 1  MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNG 48

[Close]

BLAST of CmoCh01G014190 vs. NCBI nr
Match: gi|659086968|ref|XP_008444204.1| (PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X7 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 9.2e-12
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 1


Query: 1  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNG 45
          ML PKPFAG NVFVS NLVA E+F    DALKQNGA+VF+CCDPSRNG
Sbjct: 1  MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNG 48

[Close]

BLAST of CmoCh01G014190 vs. NCBI nr
Match: gi|659086966|ref|XP_008444203.1| (PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X6 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 9.2e-12
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 1


Query: 1  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNG 45
          ML PKPFAG NVFVS NLVA E+F    DALKQNGA+VF+CCDPSRNG
Sbjct: 1  MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNG 48

The following BLAST results are available for this feature:

BLAST of CmoCh01G014190 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G014190 vs. TrEMBL


Match Name	E-value	Identity	Description
U5GGF0_POPTR	2.3e-09	66.67	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s20500g PE=4 SV=1	[more]
U5GIX9_POPTR	2.3e-09	66.67	BRCT domain-containing family protein OS=Populus trichocarpa GN=POPTR_0005s20500...	[more]
A0A0A0LB04_CUCSA	1.1e-08	63.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G529590 PE=4 SV=1	[more]
A0A059BWQ3_EUCGR	1.9e-08	64.58	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03843 PE=4 SV=1	[more]
A0A067KCX3_JATCU	4.3e-08	64.58	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12150 PE=4 SV=1	[more]

BLAST of CmoCh01G014190 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G77320.1	1.7e-08	59.52	transcription coactivators	[more]

BLAST of CmoCh01G014190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659086957\|ref\|XP_008444199.1\|	9.2e-12	77.08	PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo]	[more]
gi\|659086960\|ref\|XP_008444200.1\|	9.2e-12	77.08	PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X3 [Cucumis melo]	[more]
gi\|659086962\|ref\|XP_008444201.1\|	9.2e-12	77.08	PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X4 [Cucumis melo]	[more]
gi\|659086968\|ref\|XP_008444204.1\|	9.2e-12	77.08	PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X7 [Cucumis melo]	[more]
gi\|659086966\|ref\|XP_008444203.1\|	9.2e-12	77.08	PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X6 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G014190.1	CmoCh01G014190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..16 score:

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G014190	CmaCh09G007700	Cucurbita maxima (Rimu)	cmacmoB041
CmoCh01G014190	Cla023191	Watermelon (97103) v1	cmowmB456
CmoCh01G014190	MELO3C010511	Melon (DHL92) v3.5.1	cmomeB423
CmoCh01G014190	ClCG11G015970	Watermelon (Charleston Gray)	cmowcgB391
CmoCh01G014190	CSPI04G17560	Wild cucumber (PI 183967)	cmocpiB458
CmoCh01G014190	Lsi04G024160	Bottle gourd (USVL1VR-Ls)	cmolsiB420
CmoCh01G014190	Cp4.1LG02g03050	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G014190	Cp4.1LG06g06060	Cucurbita pepo (Zucchini)	cmocpeB461
CmoCh01G014190	MELO3C010511.2	Melon (DHL92) v3.6.1	cmomedB487
CmoCh01G014190	CsaV3_4G028020	Cucumber (Chinese Long) v3	cmocucB0542
CmoCh01G014190	Cla97C11G221960	Watermelon (97103) v2	cmowmbB437
CmoCh01G014190	Bhi09G002273	Wax gourd	cmowgoB0615
CmoCh01G014190	Carg20087	Silver-seed gourd	carcmoB1400
CmoCh01G014190	Carg00313	Silver-seed gourd	carcmoB0922

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh01G014190	CmoCh09G007620	Cucurbita moschata (Rifu)	cmocmoB013

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G014190	Cucumber (Gy14) v2	cgybcmoB476
CmoCh01G014190	Cucumber (Chinese Long) v3	cmocucB0558
CmoCh01G014190	Cucumber (Gy14) v1	cgycmoB0328
CmoCh01G014190	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G014190	Cucumber (Chinese Long) v2	cmocuB454
CmoCh01G014190	Cucumber (Chinese Long) v2	cmocuB469