Carg00313 (gene) Silver-seed gourd

Overview
NameCarg00313
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDNA topoisomerase 2-binding protein 1
LocationCucurbita_argyrosperma_scaffold_001 : 1719683 .. 1721623 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGACGAAGCAACGGCCGAGATGCTGAATCCGAAGCCCTTCGCCGGAGGCAACGTGTTCGTGTCCTGCAATCTTGTTGCTCAAGAGATATTTGATGCTCTGAAGCAGAATGGGGCTGACGTCTTCATCTGTTGCGATCCTTCTCGAAGCGGGGGTAATGATTATAATGTTATCTCTCTGTCGATCATGTATGAAATGTTTCATCGATTTTGTGTTTGATTTCTCGTTCTTCTTCGCATTGGCTATCGTTTTTTGGTTTTTGATTTTTTATTCTGGTTTCCAGGAAAAGTTCGAGGATCTTCGCGCGAAGGTGTGCAATTTGTTAGGCATGGTTCTTGTAGGTTTTAATTTGTAGTTTCGATCTCTTCTTCTCCTTCTTCTGCGGGGGTAGGACCGGAGTGCAATTTTTCGACTGACGAGTGAGACTAGCAGGAAATTGAAGGTGTCGATTAATTTGTCCAATGCGATACTTACTGAATTACTGTTACAGCTTTCTCAATTAACAAAATTAGTAGCTCGGTGACCATGCAATATGTACTTCATTGTCCGCTTGCATTTCGAATTGGCATGCCTAGTTGTTTGAAATTATCATTTCAGTCCGTCGCTTGGGACCTGGTGCTCATATCGCATTGCAATTTATTGCTATAGAATTGAATTTCTGCTATTGGGAGGGTCCTCAGTGCGTGCTTTCATGTGCAAAAGAGTACAGGCCGCTTCCTCAACAGGATTTTACTTGTTGCCTTGCTATGGATGGTGTTAAAATTCTGGCATCCGGTTTTTAGGCGGATGAAAAGGTACGTTGCTAATGTTCCTATTTCCCCCTTTTTATAGAAGCTTGTTTCTAAATTATAATACAAAATTGCATGTTTAGTTAGGGAAGTTAGTTACTGCAATGGGAGGAGTATTGCATACAAAAGCATCTCTAGATTCACCTTCATCGTTGTGAAGAATGTCTTGGCTGCAAAATACAAGGTTGTGATGCTTGAATTTACCTTTTTATTGACGTGATGTATATGTGAATTTTGTTTTCTTTTTAATCTGTGTAAAGATCCTCCAAATATTCATACAAATTTCTAAATTTCTGACAATTGTAGTTTAAAATAAGAAAGAGAATGGATGGAAAGACATCTTGAAAGGAGGTGGGGAGTGGAGGTGGGTAAGGATTAGTGATAGTTGAAACATTAATTTTGTTTCAAATGCAATGGCAACTCCTTGAAATAGCTGCACTTCTATAACCACTAAGATTCCTAATTATTTGAAACACTACAGCAATCCAGGGCCTAGAATAGAAGCGATGATATGGGAAATACTGATGATGTCAGAGCCTTGACTATTACTAGAAGGATTTATGAGGAAGGGATTTTATTATACCAAAAGCATTATATAGCAATCATTATGCAGCACAGTTGTTATCTTAACACGAGGCATTTATGAATATAATCTTCAAAATCTTCTGCATCCCACATAATTGATGTAACATAGTACGTAAGTGAGAATAGCTATTGATATCTCGCAGAAAGCTGTATCTTGTTCAACAGTTCCAGCTCCATAACTTTGAAAGTAAGTCTTCGGAGTGTATATAATTCTAAATCAGTTCCTTTGACCTCATTGTATCTCAAGTATATTCCCATCCTGTTAACAGATTGATTTAGAAAAGTTCAAGATAATTCCAATGTCATTTAGCATATGAAAAGGGTACCATTCCTTTTAGCATATGAAACTATGGCTTTGACAAATTTATTCATTTTATTGATGATATATATTCTGACGATCATATTTGAATTCTCTCCTAGACAGCTGAAATTGTTGAATGGATAAATCAAAAGGGGGAGGGGAGATTGTTGAGGACCACAAGAGAAACGACATCAAAATCTTCTGTAGTAACTTTACATGTTCCTGATGTTGCTGCTGCAATTGAGAACTTTTTGGAGCAGACAAGGTAA

mRNA sequence

TGACGAAGCAACGGCCGAGATGCTGAATCCGAAGCCCTTCGCCGGAGGCAACGTGTTCGTGTCCTGCAATCTTGTTGCTCAAGAGATATTTGATGCTCTGAAGCAGAATGGGGCTGACGTCTTCATCTGTTGCGATCCTTCTCGAAGCGGGGGAAAAGTTCGAGGATCTTCGCGCGAAGGTGTGCAATTTGTTAGGCATGTTTCGATCTCTTCTTCTCCTTCTTCTGCGGGGGTAGGACCGGAGTGCAATTTTTCGACTGACGAGCCGCTTCCTCAACAGGATTTTACTTGTTGCCTTGCTATGGATGGTGTTAAAATTCTGGCATCCGTTAGGGAAGTTAGTTACTGCAATGGGAGGAGTATTGCATACAAAAGCATCTCTAGATTCACCTTCATCGTTGTGAAGAATGTCTTGGCTGCAAAATACAAGACAGCTGAAATTGTTGAATGGATAAATCAAAAGGGGGAGGGGAGATTGTTGAGGACCACAAGAGAAACGACATCAAAATCTTCTGTAGTAACTTTACATGTTCCTGATGTTGCTGCTGCAATTGAGAACTTTTTGGAGCAGACAAGGTAA

Coding sequence (CDS)

ATGCTGAATCCGAAGCCCTTCGCCGGAGGCAACGTGTTCGTGTCCTGCAATCTTGTTGCTCAAGAGATATTTGATGCTCTGAAGCAGAATGGGGCTGACGTCTTCATCTGTTGCGATCCTTCTCGAAGCGGGGGAAAAGTTCGAGGATCTTCGCGCGAAGGTGTGCAATTTGTTAGGCATGTTTCGATCTCTTCTTCTCCTTCTTCTGCGGGGGTAGGACCGGAGTGCAATTTTTCGACTGACGAGCCGCTTCCTCAACAGGATTTTACTTGTTGCCTTGCTATGGATGGTGTTAAAATTCTGGCATCCGTTAGGGAAGTTAGTTACTGCAATGGGAGGAGTATTGCATACAAAAGCATCTCTAGATTCACCTTCATCGTTGTGAAGAATGTCTTGGCTGCAAAATACAAGACAGCTGAAATTGTTGAATGGATAAATCAAAAGGGGGAGGGGAGATTGTTGAGGACCACAAGAGAAACGACATCAAAATCTTCTGTAGTAACTTTACATGTTCCTGATGTTGCTGCTGCAATTGAGAACTTTTTGGAGCAGACAAGGTAA

Protein sequence

MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRSGGKVRGSSREGVQFVRHVSISSSPSSAGVGPECNFSTDEPLPQQDFTCCLAMDGVKILASVREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTAEIVEWINQKGEGRLLRTTRETTSKSSVVTLHVPDVAAAIENFLEQTR
Homology
[Close]
BLAST of Carg00313 vs. NCBI nr
Match: XP_022936988.1 (DNA topoisomerase 2-binding protein 1-A isoform X2 [Cucurbita moschata])

HSP 1 Score: 124.4 bits (311), Expect = 4.0e-25
Identity = 74/159 (46.54%), Postives = 96/159 (60.38%), Query Frame = 0 

Query: 1   MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSR 60
           ML PKPFAG NVFVS NLVA EIF    DALKQNGA+VF+CCDP+R+G K    +  +  
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEIFDALHDALKQNGAEVFLCCDPARNGPKDYHVISSADH 60

Query: 61  EGVQFVRHVSISSSPSSAGVGPECNFS---TDEPLPQQDFTCCLAMDGVKILAS------ 120
           E  + +R    +       +GP+C  S    + PLPQQ FTCCLAMDGVKILAS      
Sbjct: 61  EKFEDLRAKGCNL------LGPQCVMSCAKENRPLPQQGFTCCLAMDGVKILASGFQADE 120

Query: 121 ---VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA 140
              + ++    G  +  ++ +  +F++ KN LAAKYK A
Sbjct: 121 KVEIGKLVNAMGGVLQTRASADVSFVIAKNALAAKYKWA 153


HSP 2 Score: 53.1 bits (126), Expect = 1.1e-03
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 154 LRTTRETTSKSSVVTLHVPDVAAAIENFLEQT 186
           L +TRETTSKSSVVT HVPDVAAAIE+ LEQT
Sbjct: 837 LNSTRETTSKSSVVTSHVPDVAAAIEDLLEQT 868

[Close]
BLAST of Carg00313 vs. NCBI nr
Match: XP_022936987.1 (DNA topoisomerase 2-binding protein 1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 124.4 bits (311), Expect = 4.0e-25
Identity = 74/159 (46.54%), Postives = 96/159 (60.38%), Query Frame = 0 

Query: 1   MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSR 60
           ML PKPFAG NVFVS NLVA EIF    DALKQNGA+VF+CCDP+R+G K    +  +  
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEIFDALHDALKQNGAEVFLCCDPARNGPKDYHVISSADH 60

Query: 61  EGVQFVRHVSISSSPSSAGVGPECNFS---TDEPLPQQDFTCCLAMDGVKILAS------ 120
           E  + +R    +       +GP+C  S    + PLPQQ FTCCLAMDGVKILAS      
Sbjct: 61  EKFEDLRAKGCNL------LGPQCVMSCAKENRPLPQQGFTCCLAMDGVKILASGFQADE 120

Query: 121 ---VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA 140
              + ++    G  +  ++ +  +F++ KN LAAKYK A
Sbjct: 121 KVEIGKLVNAMGGVLQTRASADVSFVIAKNALAAKYKWA 153


HSP 2 Score: 53.1 bits (126), Expect = 1.1e-03
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 154 LRTTRETTSKSSVVTLHVPDVAAAIENFLEQT 186
           L +TRETTSKSSVVT HVPDVAAAIE+ LEQT
Sbjct: 840 LNSTRETTSKSSVVTSHVPDVAAAIEDLLEQT 871

[Close]
BLAST of Carg00313 vs. NCBI nr
Match: XP_022976695.1 (DNA topoisomerase 2-binding protein 1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 124.4 bits (311), Expect = 4.0e-25
Identity = 75/159 (47.17%), Postives = 96/159 (60.38%), Query Frame = 0 

Query: 1   MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSR 60
           ML PKPFAG NVFVS NLVA EIF    DALKQNGA+VF+CCDP+R+G K    +  +  
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEIFDALHDALKQNGAEVFLCCDPARNGPKDYHVISSADH 60

Query: 61  EGVQFVRHVSISSSPSSAGVGPECNFS---TDEPLPQQDFTCCLAMDGVKILAS------ 120
           E  + +R      S     +GP+C  S    + PLPQQ FTCCLAMDGVKILAS      
Sbjct: 61  EKFEDLR------SKGCNLLGPQCVMSCAKENRPLPQQGFTCCLAMDGVKILASGFQADE 120

Query: 121 ---VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA 140
              + ++    G  +  ++ +  +F++ KN LAAKYK A
Sbjct: 121 KVEIGKLVNAMGGVLQTRASADVSFVIAKNALAAKYKWA 153


HSP 2 Score: 53.1 bits (126), Expect = 1.1e-03
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 154 LRTTRETTSKSSVVTLHVPDVAAAIENFLEQT 186
           L +TRETTSKSSVVT HVPDVAAAIE+ LEQT
Sbjct: 840 LNSTRETTSKSSVVTSHVPDVAAAIEDLLEQT 871

[Close]
BLAST of Carg00313 vs. NCBI nr
Match: XP_022976696.1 (DNA topoisomerase 2-binding protein 1-A isoform X2 [Cucurbita maxima])

HSP 1 Score: 124.4 bits (311), Expect = 4.0e-25
Identity = 75/159 (47.17%), Postives = 96/159 (60.38%), Query Frame = 0 

Query: 1   MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSR 60
           ML PKPFAG NVFVS NLVA EIF    DALKQNGA+VF+CCDP+R+G K    +  +  
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEIFDALHDALKQNGAEVFLCCDPARNGPKDYHVISSADH 60

Query: 61  EGVQFVRHVSISSSPSSAGVGPECNFS---TDEPLPQQDFTCCLAMDGVKILAS------ 120
           E  + +R      S     +GP+C  S    + PLPQQ FTCCLAMDGVKILAS      
Sbjct: 61  EKFEDLR------SKGCNLLGPQCVMSCAKENRPLPQQGFTCCLAMDGVKILASGFQADE 120

Query: 121 ---VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA 140
              + ++    G  +  ++ +  +F++ KN LAAKYK A
Sbjct: 121 KVEIGKLVNAMGGVLQTRASADVSFVIAKNALAAKYKWA 153


HSP 2 Score: 53.1 bits (126), Expect = 1.1e-03
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 154 LRTTRETTSKSSVVTLHVPDVAAAIENFLEQT 186
           L +TRETTSKSSVVT HVPDVAAAIE+ LEQT
Sbjct: 837 LNSTRETTSKSSVVTSHVPDVAAAIEDLLEQT 868

[Close]
BLAST of Carg00313 vs. NCBI nr
Match: XP_023535949.1 (DNA topoisomerase 2-binding protein 1-A isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 123.2 bits (308), Expect = 9.0e-25
Identity = 75/159 (47.17%), Postives = 96/159 (60.38%), Query Frame = 0 

Query: 1   MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSR 60
           ML PKPFAG NVFVS NLVA EIF    DALKQNGA+VF+CCDP+R+G K    +  +  
Sbjct: 1   MLKPKPFAGVNVFVSRNLVAPEIFDALHDALKQNGAEVFLCCDPARNGPKDYHVISSADH 60

Query: 61  EGVQFVRHVSISSSPSSAGVGPECNFS---TDEPLPQQDFTCCLAMDGVKILAS------ 120
           E  + +R      S     +GP+C  S    + PLPQQ FTCCLAMDGVKILAS      
Sbjct: 61  EKFEDLR------SKGCNLLGPQCVMSCAKENRPLPQQGFTCCLAMDGVKILASGFQADE 120

Query: 121 ---VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA 140
              + ++    G  +  ++ +  +F++ KN LAAKYK A
Sbjct: 121 KVEIGKLVNAMGGVLQTRASADVSFVIAKNALAAKYKWA 153


HSP 2 Score: 53.1 bits (126), Expect = 1.1e-03
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 154 LRTTRETTSKSSVVTLHVPDVAAAIENFLEQT 186
           L +TRETTSKSSVVT HVPDVAAAIE+ LEQT
Sbjct: 837 LNSTRETTSKSSVVTSHVPDVAAAIEDLLEQT 868

[Close]
BLAST of Carg00313 vs. TAIR10
Match: AT1G77320.1 (transcription coactivators)

HSP 1 Score: 102.8 bits (255), Expect = 2.3e-22
Identity = 63/151 (41.72%), Postives = 83/151 (54.97%), Query Frame = 0 

Query: 7   FAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGKVRGSSREGVQFVRHVS 66
           F G NVF+S NLV  E+F    DA K NGA++F+CCDPSRSG     S    +    H  
Sbjct: 7   FKGANVFMSRNLVPPEVFDTLLDAFKLNGAEIFLCCDPSRSG----PSDFHVIASPDHEK 66

Query: 67  ISSSPSSAG--VGPECNF---STDEPLPQQDFTCCLAMDGVKILAS---------VREVS 126
                +     +GP+C         PLPQ+ FTCCLAMDG+K+LAS         ++E+ 
Sbjct: 67  FKDLKAKGCNLIGPQCALFCAKEGRPLPQRGFTCCLAMDGLKVLASGFLVDEKVKIKELV 126

Query: 127 YCNGRSIAYKSISRFTFIVVKNVLAAKYKTA 140
              G  +  ++ S   F++VKNVLAAKYK A
Sbjct: 127 TSMGGVLLSRASSDVNFVIVKNVLAAKYKWA 153

[Close]
BLAST of Carg00313 vs. TrEMBL
Match: tr|A0A1S4DV57|A0A1S4DV57_CUCME (DNA topoisomerase 2-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.0e-24
Identity = 73/159 (45.91%), Postives = 93/159 (58.49%), Query Frame = 0 

Query: 1   MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSR 60
           ML PKPFAG NVFVS NLVA E+F    DALKQNGA+VF+CCDPSR+G      +  +  
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADH 60

Query: 61  EGVQFVRHVSISSSPSSAGVGPECNFS---TDEPLPQQDFTCCLAMDGVKILAS------ 120
           E  + +R    +       +GP+C  S      PLPQQ +TCCLAMDGVKILAS      
Sbjct: 61  EKFEDLRAKGCNL------LGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDE 120

Query: 121 ---VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA 140
              + ++    G  +  K+    +F++ KN LAAKYK A
Sbjct: 121 KAEIGKLVSAMGGVLYTKASLDVSFVIAKNALAAKYKWA 153


HSP 2 Score: 50.1 bits (118), Expect = 6.4e-03
Identity = 24/32 (75.00%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 154 LRTTRETTSKSSVVTLHVPDVAAAIENFLEQT 186
           L +T++TTSKSSVVT HVPDVA+AIE+ LEQT
Sbjct: 837 LNSTKQTTSKSSVVTTHVPDVASAIEDLLEQT 868

[Close]
BLAST of Carg00313 vs. TrEMBL
Match: tr|A0A1S4DV59|A0A1S4DV59_CUCME (DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.0e-24
Identity = 73/159 (45.91%), Postives = 93/159 (58.49%), Query Frame = 0 

Query: 1   MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSR 60
           ML PKPFAG NVFVS NLVA E+F    DALKQNGA+VF+CCDPSR+G      +  +  
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADH 60

Query: 61  EGVQFVRHVSISSSPSSAGVGPECNFS---TDEPLPQQDFTCCLAMDGVKILAS------ 120
           E  + +R    +       +GP+C  S      PLPQQ +TCCLAMDGVKILAS      
Sbjct: 61  EKFEDLRAKGCNL------LGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDE 120

Query: 121 ---VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA 140
              + ++    G  +  K+    +F++ KN LAAKYK A
Sbjct: 121 KAEIGKLVSAMGGVLYTKASLDVSFVIAKNALAAKYKWA 153


HSP 2 Score: 50.1 bits (118), Expect = 6.4e-03
Identity = 24/32 (75.00%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 154 LRTTRETTSKSSVVTLHVPDVAAAIENFLEQT 186
           L +T++TTSKSSVVT HVPDVA+AIE+ LEQT
Sbjct: 837 LNSTKQTTSKSSVVTTHVPDVASAIEDLLEQT 868

[Close]
BLAST of Carg00313 vs. TrEMBL
Match: tr|E6NU78|E6NU78_JATCU (JMS09K11.6 protein OS=Jatropha curcas OX=180498 GN=JMS09K11.6 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.4e-21
Identity = 70/159 (44.03%), Postives = 90/159 (56.60%), Query Frame = 0 

Query: 1   MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSR 60
           ML  K F G NVF+S NLV  E+F    DALK NGA+VF+CCDPSR+G      +     
Sbjct: 1   MLKTKTFNGANVFMSRNLVPPEVFDALLDALKHNGAEVFLCCDPSRNGPNDYHIISSPDH 60

Query: 61  EGVQFVRHVSISSSPSSAGVGPECNFS---TDEPLPQQDFTCCLAMDGVKILAS------ 120
           E  + +R      +     +GP+C FS       LP+Q FTCCLAMDGVKILAS      
Sbjct: 61  EKFEDLR------AKGCTLLGPQCVFSCAKEHRALPKQGFTCCLAMDGVKILASGFEVDE 120

Query: 121 ---VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA 140
              + ++    G  +  K+ S  +F++VKNVLAAKYK A
Sbjct: 121 KVKIEKLVTAMGGQLHTKASSDVSFVIVKNVLAAKYKWA 153

[Close]
BLAST of Carg00313 vs. TrEMBL
Match: tr|A0A067KCX3|A0A067KCX3_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_12150 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.4e-21
Identity = 70/159 (44.03%), Postives = 90/159 (56.60%), Query Frame = 0 

Query: 1   MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSR 60
           ML  K F G NVF+S NLV  E+F    DALK NGA+VF+CCDPSR+G      +     
Sbjct: 1   MLKTKTFNGANVFMSRNLVPPEVFDALLDALKHNGAEVFLCCDPSRNGPNDYHIISSPDH 60

Query: 61  EGVQFVRHVSISSSPSSAGVGPECNFS---TDEPLPQQDFTCCLAMDGVKILAS------ 120
           E  + +R      +     +GP+C FS       LP+Q FTCCLAMDGVKILAS      
Sbjct: 61  EKFEDLR------AKGCTLLGPQCVFSCAKEHRALPKQGFTCCLAMDGVKILASGFEVDE 120

Query: 121 ---VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA 140
              + ++    G  +  K+ S  +F++VKNVLAAKYK A
Sbjct: 121 KVKIEKLVTAMGGQLHTKASSDVSFVIVKNVLAAKYKWA 153

[Close]
BLAST of Carg00313 vs. TrEMBL
Match: tr|A0A2I0IEP1|A0A2I0IEP1_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_037148 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.4e-21
Identity = 71/159 (44.65%), Postives = 89/159 (55.97%), Query Frame = 0 

Query: 1   MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSR 60
           M+N KPF G NVF+S NLV  EIF    DALKQNGA VF+CCDPSR+G      +  S  
Sbjct: 1   MMNTKPFQGTNVFMSRNLVPPEIFDMLHDALKQNGAQVFLCCDPSRNGPHDYHVISSSDH 60

Query: 61  EGVQFVRHVSISSSPSSAGVGPECNF---STDEPLPQQDFTCCLAMDGVKILAS------ 120
           E    +R      +     VGP+C         PLP+Q +TCCLAMDGVK+LAS      
Sbjct: 61  EKFDDLR------AKGCQLVGPQCVVYCAKERRPLPEQGYTCCLAMDGVKVLASGFEMDE 120

Query: 121 ---VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA 140
              + ++       +  K+    +F+VVKNVLAAKYK A
Sbjct: 121 KAEIEKLVTSMAGILQTKASPDVSFVVVKNVLAAKYKWA 153

The following BLAST results are available for this feature:
BLAST of Carg00313 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022936988.14.0e-2546.54DNA topoisomerase 2-binding protein 1-A isoform X2 [Cucurbita moschata][more]
XP_022936987.14.0e-2546.54DNA topoisomerase 2-binding protein 1 isoform X1 [Cucurbita moschata][more]
XP_022976695.14.0e-2547.17DNA topoisomerase 2-binding protein 1 isoform X1 [Cucurbita maxima][more]
XP_022976696.14.0e-2547.17DNA topoisomerase 2-binding protein 1-A isoform X2 [Cucurbita maxima][more]
XP_023535949.19.0e-2547.17DNA topoisomerase 2-binding protein 1-A isoform X2 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg00313 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G77320.12.3e-2241.72transcription coactivators[more]
BLAST of Carg00313 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg00313 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DV57|A0A1S4DV57_CUCME5.0e-2445.91DNA topoisomerase 2-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|A0A1S4DV59|A0A1S4DV59_CUCME5.0e-2445.91DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|E6NU78|E6NU78_JATCU1.4e-2144.03JMS09K11.6 protein OS=Jatropha curcas OX=180498 GN=JMS09K11.6 PE=4 SV=1[more]
tr|A0A067KCX3|A0A067KCX3_JATCU1.4e-2144.03Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_12150 PE=4 SV=1[more]
tr|A0A2I0IEP1|A0A2I0IEP1_PUNGR1.4e-2144.65Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_037148 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00313-RACarg00313-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..16
score: 5.0