CmoCh01G010630 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G010630
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transmembrane protein, putative
Location	Cmo_Chr01 : 8552381 .. 8552940 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAAGAAATAGAGCAATTCTTAGGAATCTATGGAATTCTCCAACAAACCTACAAATTCATACGACAATCGACAAGAATCTTCACCCACATCACTCTTGCCTTTATTCTTCCTCTCTCTCTCTTATCCAATTCCCTCCAATTCCTTAAACTCCTCGACCTCGTTTCCTCCAAAACAAACCATCATCTTCTCCTCAACTTCGTTTTCTCAATCTTCTCATCCATCTTATCTCTCCTCATCACCTATGCCATCGTCTACACAATCGCGGCCGGTATCTACATTGCACGTGACGTTTCTAATTTCAAACACGTGATGAGAGTCCTCCCAAAAGTTTGGAACCAGATTCTTGTCATGTTTTTGGTCACTTGTGCAGCTCTAATTGCCTTAGGATTTATTACTTACACCGTGCTGCGTTGGATGCCTGTGATCGAGATCTTAATCAACCATAAAATTGGTATTTTTTTCTTGTTTGTAATGTTTTATTTGATGGGCATTTGGTATTTGGTGATAACGTTGCAGCTGTCGAGGATGGTTGTAAAGCCATCGGTGTGGCTTAA

mRNA sequence

ATGGATGAAGAAATAGAGCAATTCTTAGGAATCTATGGAATTCTCCAACAAACCTACAAATTCATACGACAATCGACAAGAATCTTCACCCACATCACTCTTGCCTTTATTCTTCCTCTCTCTCTCTTATCCAATTCCCTCCAATTCCTTAAACTCCTCGACCTCGTTTCCTCCAAAACAAACCATCATCTTCTCCTCAACTTCGTTTTCTCAATCTTCTCATCCATCTTATCTCTCCTCATCACCTATGCCATCGTCTACACAATCGCGGCCGGTATCTACATTGCACGTGACGTTTCTAATTTCAAACACGTGATGAGAGTCCTCCCAAAAGTTTGGAACCAGATTCTTGTCATGTTTTTGGTCACTTGTGCAGCTCTAATTGCCTTAGGATTTATTACTTACACCGTGCTGCGTTGGATGCCTGTGATCGAGATCTTAATCAACCATAAAATTGCTGTCGAGGATGGTTGTAAAGCCATCGGTGTGGCTTAA

Coding sequence (CDS)

ATGGATGAAGAAATAGAGCAATTCTTAGGAATCTATGGAATTCTCCAACAAACCTACAAATTCATACGACAATCGACAAGAATCTTCACCCACATCACTCTTGCCTTTATTCTTCCTCTCTCTCTCTTATCCAATTCCCTCCAATTCCTTAAACTCCTCGACCTCGTTTCCTCCAAAACAAACCATCATCTTCTCCTCAACTTCGTTTTCTCAATCTTCTCATCCATCTTATCTCTCCTCATCACCTATGCCATCGTCTACACAATCGCGGCCGGTATCTACATTGCACGTGACGTTTCTAATTTCAAACACGTGATGAGAGTCCTCCCAAAAGTTTGGAACCAGATTCTTGTCATGTTTTTGGTCACTTGTGCAGCTCTAATTGCCTTAGGATTTATTACTTACACCGTGCTGCGTTGGATGCCTGTGATCGAGATCTTAATCAACCATAAAATTGCTGTCGAGGATGGTTGTAAAGCCATCGGTGTGGCTTAA

Homology

[Close]

BLAST of CmoCh01G010630 vs. TrEMBL
Match: A0A0A0KFW2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G398210 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.7e-20
Identity = 81/177 (45.76%), Postives = 103/177 (58.19%), Query Frame = 1


Query: 1   MDE---EIEQFLGIYGILQQTYKFIRQSTRIFTHITLAFILPLSLL-------------- 60
           MDE   E  +F+GI+GIL +T+K I Q  +IFT ITL FILPLSLL              
Sbjct: 1   MDEVKLENLKFVGIFGILHETFKLISQWRKIFTQITLLFILPLSLLIFANNEVSKFFLQK 60

Query: 61  ------------SNSLQFLKLLDLVSSKTNHHLLLNFVFSIFSSILSLLITYAIVYTIAA 120
                        ++ QFLKL  L+SS+  ++ L NF F IFS I SLL T A VYT+A 
Sbjct: 61  ISQEKTILQQTQESTPQFLKLSHLISSQNLYYSLFNFAFLIFSPIFSLLSTSATVYTVAC 120

Query: 121 GIYIARDVSNFKHVMRVLPKVWNQILVMFLVTCAALIALGFITYTVLRWMPVIEILI 149
            IY ARD+S F  VM VLPK+W Q+L+ FL   A++ A  F+   VL  +P+I ILI
Sbjct: 121 -IYAARDIS-FTLVMAVLPKLWKQLLITFLCYLASIFAFTFVAIGVLCLIPLIAILI 175

[Close]

BLAST of CmoCh01G010630 vs. TrEMBL
Match: A0A022QYS3_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a018498mg PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.6e-12
Identity = 64/165 (38.79%), Postives = 91/165 (55.15%), Query Frame = 1


Query: 1   MDEEIE--QFLGIYGILQQTYKFIRQSTRIFTHITLAFILPLSLL--------------- 60
           MD E+E  QFLG++GI  + YK I +  +IFT ITLA ILPLSL+               
Sbjct: 1   MDRELEEMQFLGLFGIYAEAYKLIFKLRKIFTQITLALILPLSLIFLGHEKISEVLYWRI 60

Query: 61  -----------SNSLQFLKLLDLVSSKTNHHLLLNFVFSIFSSILSLLITYAIVYTIAAG 120
                      + + +F  L DLVSS+ + ++L   V+     +L+LL T A+VYT+A  
Sbjct: 61  RYTEYKLHRTPAGTPRFDSLSDLVSSEWSLYVLFKAVYVTSLLVLALLATSAVVYTVAC- 120

Query: 121 IYIARDVSNFKHVMRVLPKVWNQILVMFLVTCAALIALGFITYTV 138
           +Y  R+++ FK VM V+PKVW +++V FL T      LGF  Y V
Sbjct: 121 VYTNREIT-FKKVMSVVPKVWKRLMVTFLCT-----YLGFFAYNV 158

[Close]

BLAST of CmoCh01G010630 vs. TrEMBL
Match: A0A0A0KDW0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G398200 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.0e-12
Identity = 61/167 (36.53%), Postives = 91/167 (54.49%), Query Frame = 1


Query: 1   MDEEIEQFLGIYGILQQTYKFIRQSTRIFTHITLAFILPLSLL----------------- 60
           +++E  QFLGIYGI ++T K I    RIF+ ITLA ILPLS L                 
Sbjct: 3   VEQEEMQFLGIYGIFRETTKLIFTWRRIFSQITLALILPLSFLFLAHMEISDLFLRKIMF 62

Query: 61  ---------SNSLQFLKLLDLVSSKTNHHLLLNFVFSIFSSILSLLITYAIVYTIAAGIY 120
                    +++  F KL D+VSS+  +  L   ++ +   +LSLL T A+VYT+A+ IY
Sbjct: 63  DEFVLDQTQTSTPSFDKLSDVVSSEKVYFFLFQIMYLVIFIVLSLLSTSAVVYTVAS-IY 122

Query: 121 IARDVSNFKHVMRVLPKVWNQILVMFLVTCAALIALGFITYTVLRWM 142
             RDV+ FK VM V+PKVW ++L+ FL    + +     +  V+ ++
Sbjct: 123 TGRDVA-FKPVMSVVPKVWKRLLLTFLCVFISFVGYSIASLLVITFL 167

[Close]

BLAST of CmoCh01G010630 vs. TrEMBL
Match: A0A151R5Q3_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_040979 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-11
Identity = 64/163 (39.26%), Postives = 88/163 (53.99%), Query Frame = 1


Query: 2   DEEIEQFLGIYGILQQTYKFIRQSTRIFTHITLAFILPLSLL-------SNSL------- 61
           +EE  Q LG +G+ +++YK I    +IF+ ITL  ILPLS +       SN+L       
Sbjct: 4   EEEKMQLLGFFGVYKESYKLIFSWKKIFSQITLTLILPLSFIFLIHIQVSNTLFGKIAHD 63

Query: 62  ------------QFLKLLDLVSSKTNHHLLLNFVFSIFSSILSLLITYAIVYTIAAGIYI 121
                       Q  KLLDL+SS  +   L   V+ I   I SLL T A+VYT+A+  Y 
Sbjct: 64  TEDLTETPRDTPQHQKLLDLISSDWSTFFLFKLVYFILLLIFSLLSTSAVVYTVAS-FYT 123

Query: 122 ARDVSNFKHVMRVLPKVWNQILVMFLVTCAALIALGFITYTVL 139
           A++VS F  VM V+P+VW +++V FL T AA     FI Y V+
Sbjct: 124 AKEVS-FNKVMSVVPRVWKRLMVTFLCTVAA-----FIVYNVV 159

[Close]

BLAST of CmoCh01G010630 vs. TrEMBL
Match: U5GP38_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s07500g PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.1e-11
Identity = 61/152 (40.13%), Postives = 85/152 (55.92%), Query Frame = 1


Query: 2   DEEIEQFLGIYGILQQTYKFIRQSTRIFTHITLAFILPLS------LLSNSLQFL----- 61
           ++E  QFLG++GI ++ YK I    +IF+ ITLA ILPLS      + +N ++ L     
Sbjct: 4   EQEEMQFLGVFGIYKEAYKIIFSWRKIFSQITLALILPLSFILLAHIFNNQVELLGTEAG 63

Query: 62  -----KLLDLVSSKTNHHLLLNFVFSIFSSILSLLITYAIVYTIAAGIYIARDVSNFKHV 121
                KL   +SS+  +  L    + I S I SLL T A+VYTIA+ IY  R+VS FK V
Sbjct: 64  TKRYNKLSHRISSELAYFWLFEVAYLILSHIFSLLSTAAVVYTIAS-IYTDREVS-FKKV 123

Query: 122 MRVLPKVWNQILVMFLVTCAALIALGFITYTV 138
           M V+PKVW +++V FL    A  A   +   V
Sbjct: 124 MSVVPKVWKRLMVTFLSIFVAFFAYNAVAILV 153

[Close]

BLAST of CmoCh01G010630 vs. NCBI nr
Match: gi|700192540|gb|KGN47744.1| (hypothetical protein Csa_6G398210 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 6.7e-20
Identity = 81/177 (45.76%), Postives = 103/177 (58.19%), Query Frame = 1


Query: 1   MDE---EIEQFLGIYGILQQTYKFIRQSTRIFTHITLAFILPLSLL-------------- 60
           MDE   E  +F+GI+GIL +T+K I Q  +IFT ITL FILPLSLL              
Sbjct: 1   MDEVKLENLKFVGIFGILHETFKLISQWRKIFTQITLLFILPLSLLIFANNEVSKFFLQK 60

Query: 61  ------------SNSLQFLKLLDLVSSKTNHHLLLNFVFSIFSSILSLLITYAIVYTIAA 120
                        ++ QFLKL  L+SS+  ++ L NF F IFS I SLL T A VYT+A 
Sbjct: 61  ISQEKTILQQTQESTPQFLKLSHLISSQNLYYSLFNFAFLIFSPIFSLLSTSATVYTVAC 120

Query: 121 GIYIARDVSNFKHVMRVLPKVWNQILVMFLVTCAALIALGFITYTVLRWMPVIEILI 149
            IY ARD+S F  VM VLPK+W Q+L+ FL   A++ A  F+   VL  +P+I ILI
Sbjct: 121 -IYAARDIS-FTLVMAVLPKLWKQLLITFLCYLASIFAFTFVAIGVLCLIPLIAILI 175

[Close]

BLAST of CmoCh01G010630 vs. NCBI nr
Match: gi|922398542|ref|XP_013466433.1| (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 80.5 bits (197), Expect = 3.0e-12
Identity = 68/185 (36.76%), Postives = 100/185 (54.05%), Query Frame = 1


Query: 1   MDEEIE--QFLGIYGILQQTYKFIRQSTRIFTHITLAFILPLSLL-------SNSL---- 60
           MD+E E  QFLG +G  ++++K I    +IFT ITL  +LPLS +       SN +    
Sbjct: 1   MDKEQEDMQFLGFFGCYKESFKIIFSWRKIFTQITLTLLLPLSFIFLFHIEVSNLIFKKI 60

Query: 61  ---------------QFLKLLDLVSSKTNHHLLLNFVFSIFSSILSLLITYAIVYTIAAG 120
                          ++ KL D++SS+    LL   V+  F  I SLL T AIVYT  A 
Sbjct: 61  QHTEEQIDHTQQGTPKYEKLTDIISSQFITLLLFKLVYFTFLLIFSLLSTSAIVYT-TAS 120

Query: 121 IYIARDVSNFKHVMRVLPKVWNQILVMFLVTCAALIALGFITYTVLRWMPVIEILINHKI 158
           I+ ++DVS FK VM+++PKVW ++++ FL   AA  A  FIT+ V+       IL+   I
Sbjct: 121 IFTSKDVS-FKKVMKIVPKVWKRLMITFLCAYAAFFAYNFITFFVI-------ILLAITI 176

[Close]

BLAST of CmoCh01G010630 vs. NCBI nr
Match: gi|604322045|gb|EYU32463.1| (hypothetical protein MIMGU_mgv1a018498mg [Erythranthe guttata])

HSP 1 Score: 79.7 bits (195), Expect = 5.2e-12
Identity = 64/165 (38.79%), Postives = 91/165 (55.15%), Query Frame = 1


Query: 1   MDEEIE--QFLGIYGILQQTYKFIRQSTRIFTHITLAFILPLSLL--------------- 60
           MD E+E  QFLG++GI  + YK I +  +IFT ITLA ILPLSL+               
Sbjct: 1   MDRELEEMQFLGLFGIYAEAYKLIFKLRKIFTQITLALILPLSLIFLGHEKISEVLYWRI 60

Query: 61  -----------SNSLQFLKLLDLVSSKTNHHLLLNFVFSIFSSILSLLITYAIVYTIAAG 120
                      + + +F  L DLVSS+ + ++L   V+     +L+LL T A+VYT+A  
Sbjct: 61  RYTEYKLHRTPAGTPRFDSLSDLVSSEWSLYVLFKAVYVTSLLVLALLATSAVVYTVAC- 120

Query: 121 IYIARDVSNFKHVMRVLPKVWNQILVMFLVTCAALIALGFITYTV 138
           +Y  R+++ FK VM V+PKVW +++V FL T      LGF  Y V
Sbjct: 121 VYTNREIT-FKKVMSVVPKVWKRLMVTFLCT-----YLGFFAYNV 158

[Close]

BLAST of CmoCh01G010630 vs. NCBI nr
Match: gi|848886103|ref|XP_012843296.1| (PREDICTED: uncharacterized protein LOC105963438 [Erythranthe guttata])

HSP 1 Score: 79.7 bits (195), Expect = 5.2e-12
Identity = 64/165 (38.79%), Postives = 91/165 (55.15%), Query Frame = 1


Query: 1   MDEEIE--QFLGIYGILQQTYKFIRQSTRIFTHITLAFILPLSLL--------------- 60
           MD E+E  QFLG++GI  + YK I +  +IFT ITLA ILPLSL+               
Sbjct: 30  MDRELEEMQFLGLFGIYAEAYKLIFKLRKIFTQITLALILPLSLIFLGHEKISEVLYWRI 89

Query: 61  -----------SNSLQFLKLLDLVSSKTNHHLLLNFVFSIFSSILSLLITYAIVYTIAAG 120
                      + + +F  L DLVSS+ + ++L   V+     +L+LL T A+VYT+A  
Sbjct: 90  RYTEYKLHRTPAGTPRFDSLSDLVSSEWSLYVLFKAVYVTSLLVLALLATSAVVYTVAC- 149

Query: 121 IYIARDVSNFKHVMRVLPKVWNQILVMFLVTCAALIALGFITYTV 138
           +Y  R+++ FK VM V+PKVW +++V FL T      LGF  Y V
Sbjct: 150 VYTNREIT-FKKVMSVVPKVWKRLMVTFLCT-----YLGFFAYNV 187

[Close]

BLAST of CmoCh01G010630 vs. NCBI nr
Match: gi|388499710|gb|AFK37921.1| (unknown [Medicago truncatula])

HSP 1 Score: 79.0 bits (193), Expect = 8.8e-12
Identity = 67/185 (36.22%), Postives = 99/185 (53.51%), Query Frame = 1


Query: 1   MDEEIE--QFLGIYGILQQTYKFIRQSTRIFTHITLAFILPLSLL-------SNSL---- 60
           MD+E E  QFLG +G  ++++K I    +IFT ITL  +LPLS +       SN +    
Sbjct: 1   MDKEQEDMQFLGFFGCYKESFKIIFSWRKIFTQITLTLLLPLSFIFLFHIEVSNLIFKKI 60

Query: 61  ---------------QFLKLLDLVSSKTNHHLLLNFVFSIFSSILSLLITYAIVYTIAAG 120
                          ++ KL D++SS+    LL   V+  F  I SLL T AIVYT  A 
Sbjct: 61  QHTEEQIDHTQQGTPKYEKLTDIISSQFITLLLFKLVYFTFLLIFSLLSTSAIVYT-TAS 120

Query: 121 IYIARDVSNFKHVMRVLPKVWNQILVMFLVTCAALIALGFITYTVLRWMPVIEILINHKI 158
           I+ ++DVS FK VM+++PKVW ++++ FL    A  A  FIT+ V+       IL+   I
Sbjct: 121 IFTSKDVS-FKKVMKIVPKVWKRLMITFLCAYVAFFAYNFITFFVI-------ILLAITI 176

The following BLAST results are available for this feature:

BLAST of CmoCh01G010630 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G010630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFW2_CUCSA	4.7e-20	45.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G398210 PE=4 SV=1	[more]
A0A022QYS3_ERYGU	3.6e-12	38.79	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a018498mg PE=4 SV=1	[more]
A0A0A0KDW0_CUCSA	8.0e-12	36.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G398200 PE=4 SV=1	[more]
A0A151R5Q3_CAJCA	1.8e-11	39.26	Uncharacterized protein OS=Cajanus cajan GN=KK1_040979 PE=4 SV=1	[more]
U5GP38_POPTR	3.1e-11	40.13	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s07500g PE=4 SV=1	[more]

BLAST of CmoCh01G010630 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh01G010630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192540\|gb\|KGN47744.1\|	6.7e-20	45.76	hypothetical protein Csa_6G398210 [Cucumis sativus]	[more]
gi\|922398542\|ref\|XP_013466433.1\|	3.0e-12	36.76	transmembrane protein, putative [Medicago truncatula]	[more]
gi\|604322045\|gb\|EYU32463.1\|	5.2e-12	38.79	hypothetical protein MIMGU_mgv1a018498mg [Erythranthe guttata]	[more]
gi\|848886103\|ref\|XP_012843296.1\|	5.2e-12	38.79	PREDICTED: uncharacterized protein LOC105963438 [Erythranthe guttata]	[more]
gi\|388499710\|gb\|AFK37921.1\|	8.8e-12	36.22	unknown [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G010630.1	CmoCh01G010630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33133	FAMILY NOT NAMED	coord: 1..149 score: 9.4
None	No IPR available	PANTHER	PTHR33133:SF5	EXPRESSED PROTEIN	coord: 1..149 score: 9.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G010630	CmaCh01G010210	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G010630	Cp4.1LG06g07910	Cucurbita pepo (Zucchini)	cmocpeB464
CmoCh01G010630	Carg26867	Silver-seed gourd	carcmoB0861

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G010630	Silver-seed gourd	carcmoB0093
CmoCh01G010630	Silver-seed gourd	carcmoB0822
CmoCh01G010630	Silver-seed gourd	carcmoB1384
CmoCh01G010630	Cucurbita moschata (Rifu)	cmocmoB018
CmoCh01G010630	Cucurbita moschata (Rifu)	cmocmoB367
CmoCh01G010630	Cucurbita maxima (Rimu)	cmacmoB048
CmoCh01G010630	Cucurbita pepo (Zucchini)	cmocpeB447
CmoCh01G010630	Cucurbita pepo (Zucchini)	cmocpeB448