CmaCh01G010210 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G010210
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr01 : 7508153 .. 7508998 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAAGAAATAGAGCAATTCTTAGGAATCTATGGAATTCTCCAACAAACCTACAAATTCATACAAAAATCGACAAGAATCTTCACTCACATCACTCTTGCCTTTATTCTTCCTCTCTCTCTCTTATCCAATTCCCTCCAATTCCTTAAACTCCTCGACCTCGTTTCCTCCAAAACAAGCCATCATGTTCTCATCAACTTCGTTTTCTCAATCTTCTCATCCATCTTATCTCTCCTCATCACCTATGCCATCGTCTACACAATCGCGGCCGGTATCTACATTGCACGTGACGTTTCCAATTTCAAGCACGTGTTGAGAGTCCTCCCAAAAGTTTGGAACCAGATTCTTGTCATGTTTTTGTGCAATTGTGCAGCTCTTATTGCCTTTGGATTTATTACTTATACCGTGCTGCGTTGGATGCCTGTGATAGAGATCTTAATCGACCATAAAATTGGTATCACTATTAATGGGAGCATTTTTTTCTTGTTTGTAATGTTTTATTTGATGGGCATTTGGTATTTGGTGATAGCGTTGCAGCTGTCGAGGATGGTTGTAAAGCCATCGGTGTGGCTGAATTTGCCTTTGGGGAAGGTTAAGTTTGAGCTTTATTGGTTTGTTGGTCGGCCAGCGTTGGTGAGGGTGGTGGGAAGGGGTGAGTCTTTCATTTTATGGGGTTTGTTGTGTTTGTTGGCCGAGTTTGTGGCGGAAATTGTGGTGTATTTTGTTTGCAAATGGTGTCACTGTGAGAGTGTTGATAAGCTGCCTCTATCGGACCATTTTTATGGTCATTTGTCGCCTAATTATGTTCGGTCGGATGTTAACAATGTTGTTCATCAATCATAA

mRNA sequence

ATGGATGAAGAAATAGAGCAATTCTTAGGAATCTATGGAATTCTCCAACAAACCTACAAATTCATACAAAAATCGACAAGAATCTTCACTCACATCACTCTTGCCTTTATTCTTCCTCTCTCTCTCTTATCCAATTCCCTCCAATTCCTTAAACTCCTCGACCTCGTTTCCTCCAAAACAAGCCATCATGTTCTCATCAACTTCGTTTTCTCAATCTTCTCATCCATCTTATCTCTCCTCATCACCTATGCCATCGTCTACACAATCGCGGCCGCTCTTATTGCCTTTGGATTTATTACTTATACCGTGCTGCGTTGGATGCCTGTGATAGAGATCTTAATCGACCATAAAATTGCGTTGCAGCTGTCGAGGATGGTTGTAAAGCCATCGGTGTGGCTGAATTTGCCTTTGGGGAAGGTTAAGTTTGAGCTTTATTGGTTTGTTGGTCGGCCAGCGTTGGTGAGGGTGGTGGGAAGGGGTGAGTCTTTCATTTTATGGGGTTTGTTGTGTTTGTTGGCCGAGTTTGTGGCGGAAATTGTGGTGTATTTTGTTTGCAAATGGTGTCACTGTGAGAGTGTTGATAAGCTGCCTCTATCGGACCATTTTTATGGTCATTTGTCGCCTAATTATGTTCGGTCGGATGTTAACAATGTTGTTCATCAATCATAA

Coding sequence (CDS)

ATGGATGAAGAAATAGAGCAATTCTTAGGAATCTATGGAATTCTCCAACAAACCTACAAATTCATACAAAAATCGACAAGAATCTTCACTCACATCACTCTTGCCTTTATTCTTCCTCTCTCTCTCTTATCCAATTCCCTCCAATTCCTTAAACTCCTCGACCTCGTTTCCTCCAAAACAAGCCATCATGTTCTCATCAACTTCGTTTTCTCAATCTTCTCATCCATCTTATCTCTCCTCATCACCTATGCCATCGTCTACACAATCGCGGCCGCTCTTATTGCCTTTGGATTTATTACTTATACCGTGCTGCGTTGGATGCCTGTGATAGAGATCTTAATCGACCATAAAATTGCGTTGCAGCTGTCGAGGATGGTTGTAAAGCCATCGGTGTGGCTGAATTTGCCTTTGGGGAAGGTTAAGTTTGAGCTTTATTGGTTTGTTGGTCGGCCAGCGTTGGTGAGGGTGGTGGGAAGGGGTGAGTCTTTCATTTTATGGGGTTTGTTGTGTTTGTTGGCCGAGTTTGTGGCGGAAATTGTGGTGTATTTTGTTTGCAAATGGTGTCACTGTGAGAGTGTTGATAAGCTGCCTCTATCGGACCATTTTTATGGTCATTTGTCGCCTAATTATGTTCGGTCGGATGTTAACAATGTTGTTCATCAATCATAA

Protein sequence

MDEEIEQFLGIYGILQQTYKFIQKSTRIFTHITLAFILPLSLLSNSLQFLKLLDLVSSKTSHHVLINFVFSIFSSILSLLITYAIVYTIAAALIAFGFITYTVLRWMPVIEILIDHKIALQLSRMVVKPSVWLNLPLGKVKFELYWFVGRPALVRVVGRGESFILWGLLCLLAEFVAEIVVYFVCKWCHCESVDKLPLSDHFYGHLSPNYVRSDVNNVVHQS

Homology

[Close]

BLAST of CmaCh01G010210 vs. TrEMBL
Match: A0A0A0KFW2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G398210 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.3e-08
Identity = 53/124 (42.74%), Postives = 67/124 (54.03%), Query Frame = 1


Query: 1   MDE---EIEQFLGIYGILQQTYKFIQKSTRIFTHITLAFILPLSLL-------------- 60
           MDE   E  +F+GI+GIL +T+K I +  +IFT ITL FILPLSLL              
Sbjct: 1   MDEVKLENLKFVGIFGILHETFKLISQWRKIFTQITLLFILPLSLLIFANNEVSKFFLQK 60

Query: 61  ------------SNSLQFLKLLDLVSSKTSHHVLINFVFSIFSSILSLLITYAIVYTIAA 96
                        ++ QFLKL  L+SS+  ++ L NF F IFS I SLL T A VYT+A 
Sbjct: 61  ISQEKTILQQTQESTPQFLKLSHLISSQNLYYSLFNFAFLIFSPIFSLLSTSATVYTVAC 120

[Close]

BLAST of CmaCh01G010210 vs. NCBI nr
Match: gi|700192540|gb|KGN47744.1| (hypothetical protein Csa_6G398210 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 6.1e-08
Identity = 53/124 (42.74%), Postives = 67/124 (54.03%), Query Frame = 1


Query: 1   MDE---EIEQFLGIYGILQQTYKFIQKSTRIFTHITLAFILPLSLL-------------- 60
           MDE   E  +F+GI+GIL +T+K I +  +IFT ITL FILPLSLL              
Sbjct: 1   MDEVKLENLKFVGIFGILHETFKLISQWRKIFTQITLLFILPLSLLIFANNEVSKFFLQK 60

Query: 61  ------------SNSLQFLKLLDLVSSKTSHHVLINFVFSIFSSILSLLITYAIVYTIAA 96
                        ++ QFLKL  L+SS+  ++ L NF F IFS I SLL T A VYT+A 
Sbjct: 61  ISQEKTILQQTQESTPQFLKLSHLISSQNLYYSLFNFAFLIFSPIFSLLSTSATVYTVAC 120

[Close]

BLAST of CmaCh01G010210 vs. NCBI nr
Match: gi|778722278|ref|XP_011658450.1| (PREDICTED: uncharacterized protein LOC105436009 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 7.5e-06
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 1


Query: 124 RMVVKPSVWLNLPLGKVKFEL-YWFVGRPALVRVVGRGESFILWGLLCLLAEFVAEIVVY 183
           +MV+K  V L+ PLG ++F L ++FV R   V     G  ++L  ++ +L + V E VVY
Sbjct: 108 KMVIKLWVLLDFPLGVIQFALLHYFVTRSTWVGWSILGICWVLSFMVFVLVKLVLETVVY 167

Query: 184 FVCKWCHCESVDKLPLSDHFYGHLSPNY 211
           FVCK  H E VD +PL +H  G++ P++
Sbjct: 168 FVCKLHHGEMVDMMPLWNHLQGYVLPHH 195

The following BLAST results are available for this feature:

BLAST of CmaCh01G010210 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh01G010210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFW2_CUCSA	4.3e-08	42.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G398210 PE=4 SV=1	[more]

BLAST of CmaCh01G010210 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh01G010210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192540\|gb\|KGN47744.1\|	6.1e-08	42.74	hypothetical protein Csa_6G398210 [Cucumis sativus]	[more]
gi\|778722278\|ref\|XP_011658450.1\|	7.5e-06	39.77	PREDICTED: uncharacterized protein LOC105436009 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G010210.1	CmaCh01G010210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33133	FAMILY NOT NAMED	coord: 1..90 score: 1.1
None	No IPR available	PANTHER	PTHR33133:SF5	EXPRESSED PROTEIN	coord: 1..90 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh01G010210	CmoCh09G010720	Cucurbita moschata (Rifu)	cmacmoB436
CmaCh01G010210	CmoCh01G010630	Cucurbita moschata (Rifu)	cmacmoB468
CmaCh01G010210	Cp4.1LG06g07910	Cucurbita pepo (Zucchini)	cmacpeB508

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh01G010210	Cucurbita maxima (Rimu)	cmacmaB052
CmaCh01G010210	Cucurbita pepo (Zucchini)	cmacpeB489
CmaCh01G010210	Cucurbita pepo (Zucchini)	cmacpeB490
CmaCh01G010210	Bottle gourd (USVL1VR-Ls)	cmalsiB458
CmaCh01G010210	Silver-seed gourd	carcmaB0886
CmaCh01G010210	Silver-seed gourd	carcmaB0844
CmaCh01G010210	Silver-seed gourd	carcmaB1430