CmoCh01G009050 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G009050
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr01 : 5060786 .. 5063108 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGGAAAGACCCTGCGGAAGAAGCTTTGGCAGGCGGCCGAGGAATGTATGTTTATGTTCTTCATTGCATGTATATCCATCAGCGTTGTTCTATCTGTTGTTTCAATTTTCAGTTCTAAAAGAACGAGAGAGAGGCTTCTTTTAGCGATTTTTTGGCTTGATTCTTCTTTGTTATGTTTGTTAAGTACATTTGTGCTTCCTAGGTCTCTTCTTGTTTTTGTTTATCGTCTAGTTACCATAGCTTCTTGTTTATTAAGCAGATAATATCAGTTTTAGATTGACCTCTTTATCCTATCTTATCTGATCTTTTTTAGGTTTTGCATAGTGCCCCTCGCGAAAACTCTGGTTAACTCAGTCACACAGATGGTATGGTTCTAACCTTATCCACTACAGTTCTTGCTGCTGCTGCTGCTGTTATTGTTGTTTTTATTTTATTTTTCTTTGCAAAAGAAACAACTGAGTTAGCTCAAAAGAACTGTGGAAAAAAACTTGGCAATCAATGTTAGGAAACTGCAATTGTAAATGAACTGTGGCTTGATAGAATTTGGGGTTCTTAGGTTACATGTTTTTATACGATTTTACACATTTTATGCATATTAGATCTTGTGAGGCATTGAATCTTCAATGTACATAATTATTTGTGTTGAGATTCAGTAGGTAAAGTTAAGTAAAATGACGATTGAGAAGTTTCAAAATCCATTGTTTAATCAGTTATCAAGTGGTCTTAGCTTGGCCTGGTTCGTTAGTTTTGCCTCATTCTGTTCTTTCTTCCTTTTCTGAACCTAGCTCTAATTTTGAGACCACAGGTGCATGTTTTTGTTATATTTGTAAATAAGATACTCGTTAAGAAGAGTGAAAGAATTGAATGGAAGCAACCCAAAAAAGCAATGCCCCACCAACAAAGGGGCAACTAAGAGGACAATCAAAATTGCTAGAAGGAGATCCACTTGTTGGCAATTAAGGAAAGAGGAAGATTACAAAAAAAGATTAGATACATATACCCAAGTAGATGCATGAAAGGGGGCTAGATCTAGAATATCCTCCTAAGATCCCTCCAACACCCAAAGAACTACTGGCGTCCTTATCTTCTTTTGTAAGAACACTTCATGAAATAAAATTCCTATTTGATTCACATTCATTCACTGAATCCTGGTTGCATACATTACACCAATCGGGCAAAGAACCGTAGCTGAGGATTTCTAGATAATATCAGTGGAGTTAAAATAGAGAATATGCAAAAATATTAAAAAAGGGCGAGGAAAGCTCTCCTTAGCAGACGCGTTTTAAAAACCTTGAGAGAAATTCGAAAGGGAAAGTCCAAAGAGGACAATATCTGCTAGCAGTAGGCTTGGGCCGTTACATTTTCCTTTTCTTTTTATGAATTGACGATGAATAGTATTAAGAAGTGGGAACAAGCCACTTATTAATCTGCCCTTTCTGTGCAGATCATTTATCCACCTCATGGCTGCCTAACAGTGAGGTCAAATTAGGTTTATGATCAGTAGTACTAGGAAGTTGTAAAAAGCCACCTAGTCCACGCTTTCTACTAGCTACAATCTTTTTCATCTCCCCTCATGTCTGCCTATTGGTGAGACCAAAGTAGGCATTGTTGTGGGTTAGATGTTCAGCCTTGGGTTTGATTACGCCTCAGATCATTCTTCAATTTAAGCAGAGGTCCTTGATAGTGAGTTTGTGCAATTAATTTCTTCTACTACTCACAATTCATAATATGTAGCAAAATTCTTTCTGTGATATATCTTTAAGATTAATCGCTCGGAGTTTCGGATTATTGTGGGCATACATTAACAGGTTTAAGAGAAGGGTTTCATTTTCTTGGGTGCATATAACATGTTTATTGTTCTTAACCCCAATGGACATTAGGCTGCACAATTCCTTACTTTTGGATGTTTTCTGAATACAACGTGAAAGACCGACTGCCAGACCTCTAACTCGAATACTCGTGATTCTCCTTCCATTGCAGTTTAACATTGCAGCAACATCTGCAGTGCAAGCTCTTGAAAAGCCAGAACTACTTTCACCTCAGGTACTACAAGCTGGTCTCCATGAAAGGGTTGAGAAATTCATGTTGTCCGTACAAAACTCTGCATTCCACTGTGGCTTGCAGAAAACAAATTCTCCTTCTCCCGCCACTAGTTCCTTGGATCTACATGATGATGAAAGAATGGATCACTGAGTGTAAATGATCCTCATACACTTGAAACTTGAGAGATTAAGGTAGAAGGAAATTAAATTTGATAGGCCTTTTTCGTTTTTCCTCCACTTGCAGACAGTGGTCTGGTTTAGTTTCTCAAATTTTGGC

mRNA sequence

ATGAATGGAAAGACCCTGCGGAAGAAGCTTTGGCAGGCGGCCGAGGAATGTATGTTTATGTTCTTCATTGCATGTATATCCATCAGCGTTGTTCTATCTGTTGTTTCAATTTTCAGTTCTAAAAGAACGAGAGAGAGGCTTCTTTTAGCGATTTTTTGGCTTGATTCTTCTTTGTTATGTTTGTTAAGTACATTTGTGCTTCCTAGGTTTTGCATAGTGCCCCTCGCGAAAACTCTGGTTAACTCAGTCACACAGATGTTTAACATTGCAGCAACATCTGCAGTGCAAGCTCTTGAAAAGCCAGAACTACTTTCACCTCAGGTACTACAAGCTGGTCTCCATGAAAGGGTTGAGAAATTCATGTTGTCCGTACAAAACTCTGCATTCCACTGTGGCTTGCAGAAAACAAATTCTCCTTCTCCCGCCACTAGTTCCTTGGATCTACATGATGATGAAAGAATGGATCACTGAGTGTAAATGATCCTCATACACTTGAAACTTGAGAGATTAAGGTAGAAGGAAATTAAATTTGATAGGCCTTTTTCGTTTTTCCTCCACTTGCAGACAGTGGTCTGGTTTAGTTTCTCAAATTTTGGC

Coding sequence (CDS)

ATGAATGGAAAGACCCTGCGGAAGAAGCTTTGGCAGGCGGCCGAGGAATGTATGTTTATGTTCTTCATTGCATGTATATCCATCAGCGTTGTTCTATCTGTTGTTTCAATTTTCAGTTCTAAAAGAACGAGAGAGAGGCTTCTTTTAGCGATTTTTTGGCTTGATTCTTCTTTGTTATGTTTGTTAAGTACATTTGTGCTTCCTAGGTTTTGCATAGTGCCCCTCGCGAAAACTCTGGTTAACTCAGTCACACAGATGTTTAACATTGCAGCAACATCTGCAGTGCAAGCTCTTGAAAAGCCAGAACTACTTTCACCTCAGGTACTACAAGCTGGTCTCCATGAAAGGGTTGAGAAATTCATGTTGTCCGTACAAAACTCTGCATTCCACTGTGGCTTGCAGAAAACAAATTCTCCTTCTCCCGCCACTAGTTCCTTGGATCTACATGATGATGAAAGAATGGATCACTGA
Homology
[Close]
BLAST of CmoCh01G009050 vs. TrEMBL
Match: A0A0A0KUT1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G649290 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.8e-21
Identity = 58/87 (66.67%), Postives = 68/87 (78.16%), Query Frame = 1 

Query: 70  FCIVPLAKTLVNSVTQMFNIAATSAVQALEKPELLSPQVLQAGLHERVEKFMLSVQNSAF 129
           FCIVPL K+LVNSVTQM NIA  S V+A+E PELLSPQVLQAGLH+ +EKF  S+QNS F
Sbjct: 39  FCIVPLVKSLVNSVTQMVNIATVSTVKAVENPELLSPQVLQAGLHQSLEKFTSSIQNSPF 98

Query: 130 HCGLQKTNSPSPATSSLDLHDDERMDH 157
           H G QK  +PS +T SL L  DE++DH
Sbjct: 99  HLGFQKVTAPSVSTCSLHL-QDEKIDH 124

[Close]
BLAST of CmoCh01G009050 vs. TrEMBL
Match: M5VN03_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013205mg PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-08
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 1 

Query: 70  FCIVPLAKTLVNSVTQMFNIAATSAVQALEKPELLSPQVLQAGLHERVEKFMLSVQNSAF 129
           FC++PLAK L+   +Q  N+AA SAV+ LE+P+L SPQ+LQAGL+++V K   S+    F
Sbjct: 49  FCVLPLAKYLIKMASQSINLAANSAVKVLERPDLFSPQLLQAGLNDQVYKIKSSLPKPEF 108

Query: 130 HCGLQKTNSPSPATSSLDLHDDE 153
           +  L K N  S A SS      E
Sbjct: 109 NYFLLKGNLSSKAASSSSCEQTE 131

[Close]
BLAST of CmoCh01G009050 vs. TrEMBL
Match: D7TL80_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g03700 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-07
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 1 

Query: 70  FCIVPLAKTLVNSVTQMFNIAATSAVQALEKPELLSPQVLQAGLHERVEKFMLSVQNSAF 129
           FCI+PLA  L+ + +Q  N+AA +AV+ LE+P LLSPQ L+A   +R  KFM S+Q   F
Sbjct: 51  FCILPLATALLKTASQSINLAANTAVKVLERPNLLSPQELKASFDDRFHKFMSSIQKPEF 110

Query: 130 HCGLQKTNSPSPATSS 146
           +    + NS   AT S
Sbjct: 111 NLFAIEGNSTLHATES 126

[Close]
BLAST of CmoCh01G009050 vs. TrEMBL
Match: W9S9L8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012620 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-06
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 1 

Query: 70  FCIVPLAKTLVNSVTQMFNIAATSAVQALEKPELLSPQVLQAGLHERVEKFMLSVQNS 128
           FCI+PLA+ L+   +Q  N+AA+SAV+ALEKP+L SP VLQAG   ++ K   S+ NS
Sbjct: 50  FCILPLARALLKMASQSINLAASSAVKALEKPDLFSPHVLQAGFKGQLHKIKSSLTNS 107

[Close]
BLAST of CmoCh01G009050 vs. TrEMBL
Match: V7B4U6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G126000g PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.8e-06
Identity = 36/83 (43.37%), Postives = 48/83 (57.83%), Query Frame = 1 

Query: 70  FCIVPLAKTLVNSVTQMFNIAATSAVQALEKPELLSPQVLQAGLHERVEKFMLSVQNSAF 129
           FCIVPLAK LV   +Q  N+A  S  +A EKPEL SPQ+LQ+ L + V+ F    +N A 
Sbjct: 48  FCIVPLAKALVQKASQSINLAVISVKKASEKPELFSPQMLQSNLDDGVKSFRTFYKNIAS 107

Query: 130 HCGLQKTNSPSPATSSLDLHDDE 153
              +   NS S A+++  L   E
Sbjct: 108 KGFILNKNSQSHASNTSSLSHRE 130

[Close]
BLAST of CmoCh01G009050 vs. NCBI nr
Match: gi|778707896|ref|XP_011656083.1| (PREDICTED: uncharacterized protein LOC105435624 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 2.6e-21
Identity = 58/87 (66.67%), Postives = 68/87 (78.16%), Query Frame = 1 

Query: 70  FCIVPLAKTLVNSVTQMFNIAATSAVQALEKPELLSPQVLQAGLHERVEKFMLSVQNSAF 129
           FCIVPL K+LVNSVTQM NIA  S V+A+E PELLSPQVLQAGLH+ +EKF  S+QNS F
Sbjct: 39  FCIVPLVKSLVNSVTQMVNIATVSTVKAVENPELLSPQVLQAGLHQSLEKFTSSIQNSPF 98

Query: 130 HCGLQKTNSPSPATSSLDLHDDERMDH 157
           H G QK  +PS +T SL L  DE++DH
Sbjct: 99  HLGFQKVTAPSVSTCSLHL-QDEKIDH 124

[Close]
BLAST of CmoCh01G009050 vs. NCBI nr
Match: gi|659119306|ref|XP_008459585.1| (PREDICTED: uncharacterized protein LOC103498670 isoform X2 [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 2.2e-20
Identity = 58/87 (66.67%), Postives = 68/87 (78.16%), Query Frame = 1 

Query: 70  FCIVPLAKTLVNSVTQMFNIAATSAVQALEKPELLSPQVLQAGLHERVEKFMLSVQNSAF 129
           FCIVPL K+LVNSVTQM N+AA S V+A+E PELLSPQVLQAGL ER+EKF  S+QNS F
Sbjct: 2   FCIVPLVKSLVNSVTQMVNVAAISTVKAVENPELLSPQVLQAGLQERLEKFTSSIQNSPF 61

Query: 130 HCGLQKTNSPSPATSSLDLHDDERMDH 157
             G QK  +PS +T SL L  DE++DH
Sbjct: 62  RLGFQKVTAPSVSTCSLHLL-DEKIDH 87

[Close]
BLAST of CmoCh01G009050 vs. NCBI nr
Match: gi|659119304|ref|XP_008459584.1| (PREDICTED: uncharacterized protein LOC103498670 isoform X1 [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 2.2e-20
Identity = 58/87 (66.67%), Postives = 68/87 (78.16%), Query Frame = 1 

Query: 70  FCIVPLAKTLVNSVTQMFNIAATSAVQALEKPELLSPQVLQAGLHERVEKFMLSVQNSAF 129
           FCIVPL K+LVNSVTQM N+AA S V+A+E PELLSPQVLQAGL ER+EKF  S+QNS F
Sbjct: 39  FCIVPLVKSLVNSVTQMVNVAAISTVKAVENPELLSPQVLQAGLQERLEKFTSSIQNSPF 98

Query: 130 HCGLQKTNSPSPATSSLDLHDDERMDH 157
             G QK  +PS +T SL L  DE++DH
Sbjct: 99  RLGFQKVTAPSVSTCSLHLL-DEKIDH 124

[Close]
BLAST of CmoCh01G009050 vs. NCBI nr
Match: gi|645264606|ref|XP_008237756.1| (PREDICTED: uncharacterized protein LOC103336488 [Prunus mume])

HSP 1 Score: 73.2 bits (178), Expect = 4.6e-10
Identity = 39/76 (51.32%), Postives = 54/76 (71.05%), Query Frame = 1 

Query: 70  FCIVPLAKTLVNSVTQMFNIAATSAVQALEKPELLSPQVLQAGLHERVEKFMLSVQNSAF 129
           FC++PLAK+L+   +Q  N+AA SAV+ALE+P+LLSPQ+LQAGL++R+ K   S+    F
Sbjct: 49  FCVLPLAKSLIKMASQSINLAANSAVKALERPDLLSPQLLQAGLNDRLYKIKSSLPKPEF 108

Query: 130 HCGLQKTNSPSPATSS 146
           +  L K N  S A SS
Sbjct: 109 NYFLLKGNLSSKAASS 124

[Close]
BLAST of CmoCh01G009050 vs. NCBI nr
Match: gi|595798457|ref|XP_007201390.1| (hypothetical protein PRUPE_ppa013205mg [Prunus persica])

HSP 1 Score: 68.2 bits (165), Expect = 1.5e-08
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 1 

Query: 70  FCIVPLAKTLVNSVTQMFNIAATSAVQALEKPELLSPQVLQAGLHERVEKFMLSVQNSAF 129
           FC++PLAK L+   +Q  N+AA SAV+ LE+P+L SPQ+LQAGL+++V K   S+    F
Sbjct: 49  FCVLPLAKYLIKMASQSINLAANSAVKVLERPDLFSPQLLQAGLNDQVYKIKSSLPKPEF 108

Query: 130 HCGLQKTNSPSPATSSLDLHDDE 153
           +  L K N  S A SS      E
Sbjct: 109 NYFLLKGNLSSKAASSSSCEQTE 131

The following BLAST results are available for this feature:
BLAST of CmoCh01G009050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh01G009050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUT1_CUCSA1.8e-2166.67Uncharacterized protein OS=Cucumis sativus GN=Csa_5G649290 PE=4 SV=1[more]
M5VN03_PRUPE1.0e-0845.78Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013205mg PE=4 SV=1[more]
D7TL80_VITVI1.5e-0746.05Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g03700 PE=4 SV=... [more]
W9S9L8_9ROSA1.3e-0653.45Uncharacterized protein OS=Morus notabilis GN=L484_012620 PE=4 SV=1[more]
V7B4U6_PHAVU4.8e-0643.37Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G126000g PE=4 SV=1[more]
BLAST of CmoCh01G009050 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh01G009050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778707896|ref|XP_011656083.1|2.6e-2166.67PREDICTED: uncharacterized protein LOC105435624 [Cucumis sativus][more]
gi|659119306|ref|XP_008459585.1|2.2e-2066.67PREDICTED: uncharacterized protein LOC103498670 isoform X2 [Cucumis melo][more]
gi|659119304|ref|XP_008459584.1|2.2e-2066.67PREDICTED: uncharacterized protein LOC103498670 isoform X1 [Cucumis melo][more]
gi|645264606|ref|XP_008237756.1|4.6e-1051.32PREDICTED: uncharacterized protein LOC103336488 [Prunus mume][more]
gi|595798457|ref|XP_007201390.1|1.5e-0845.78hypothetical protein PRUPE_ppa013205mg [Prunus persica][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006979 response to oxidative stress
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G009050.1CmoCh01G009050.1mRNA


Synteny