CmoCh01G004470 (gene) Cucurbita moschata (Rifu)

NameCmoCh01G004470
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr01 : 2156783 .. 2159366 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACATTCGTCAAACTCCGGAGGCGTAATGGCGGCGGCGGCGGCGGCGGCAATGGGCGTCTTCATTTTGGTGCTGAGCGGAAGTGATTGCAACGTTGCTTCTCCAACTCCTTCCAGTTATGGCAACAACACCGTGGCCGCTGCGGCATCGATGTGGTGCGATGGCCGCGTCGAAGAATGCGTCACACGAGAAGGCGACAGCGCGTCCGCATTCCCAAGCCTGCAAACCTCTACACGTAAGTATATCAGTCCTTCGTCGGTTAACAGCAATAAAGCTGTGTGTGAGCGACCGGATGAATATAGAAGCTGTTTCAACCCAAGGCGCTCAAACCCCAACCCCAACAATTGTGGCCGATATACTCGCGTCTGTTGATCAACGCAATAACAACCCCAACCAACCAAAATTCAAAACTCTTTATTTCAGTTCGGTATGATTATTAGTCAAAATTATGTGTAGCTTTACTAGACCTGAATGTCTGTATTGTAAGGGATGTGATCAATCACCAACTCTTCCTACCGATTTATATGATATTTAAGCTGTTGTGTTTCTTTCTTTATTGATAGATAGCTGTGAATGTTTGTTGAATCACCGCACCTAAATGGGTGAGAGTTCTCTTATTTATAATCATTTACCGGATACAGAAATATGGTAAATTACAAATAATATGGAAATAGTAATAAAAGGAGAGAATAATAAATGGATGCACTATATTTGCCTTTAATAAAAGGGCAAATGGTAACCCGTAATGTAAGGCAAATATCTAGATATTTGTCTTATAATGAACGGCCAACTATCCTTAACAATAGTCATATAACACTTCTTCGAAAATCTCTCTCATTTTCTAAAACTTTCTTCTCAAAATAGGGTCAAAGCTTTGAACATAAGTTGTTAACTCGTAGGTGACGCGAATCTAAATTAGCTTAGCTTACTCGGTGCTGGGAGTGAGTATCGCACAAACATAAAAGTTCGCTACAAAAAAAAAAAAGTGTGATTATGACAATGACCCTGAATTATTAGAAATTTATTGAAAATAAGAGAGAATTAAATGAATATCAAAAGAATGAGGTGTTATTTTGTTTCATTTGCCTACAGCTGGACATGTATCAATCATATATGAGAAAAATCCAGACATCAAATTTGTAAGTTTACCATTGTATTACATGCACCCACAAAATGCCCATTCAATCCCAATCATGGACTCGTATTGAGGCCCGTGAGAGTGAGAGGTTGTGCACATTTATTTCCACTCGAAATAATTATGTTATTGTCGATTAGTTTAGCTTGAATTTAGCGGTGAAAAGGAACATTTTTATAAGATGAGATAAAACGCAACCAATGATAAATTCAATAATTTGCTTTATGGTTCTTCGGTGCCTTTTCCTGAATGAATCAGGAGCGAGCCATGGCATATTGCATGGGAGGAACTGATCGTTCACTTTCTTTTGTAGCTTACGATTATAGTCATCCGCCCAACTTCCAAATCACAAGAATAGCATATAAATCTTAGATAGAAAGAAGTATCTCTTATACAAAGGGATGCGATATTTAAGCGGTGATGTATAAACGTGCTTTCAATCTTTCTTTCAACTTTCCTTTCAAACTCTCTTTTGAAAATCTCTCTGCCCAATTTTTCATATTCTTCTCAACATGGGATTAAAGACTTAAACATATGTTGTGTCCGATCGACACAAATTTAAATTGACTTGACTCACTTGGTGCTGGGAGTACGTACCGCACAATCGCAAAAGTCTGCTGCAAATAAAAGTGTGATTAGACACTCAACACCAAACAAAAAAATGCACATCCAATCCAATCATCTACTACTAGATAGTATTGAGGCCCGTGAGAGAGAGAGAGAGGATGTGGCGCATTGAAGATGACCCTGTAGACTTTAAAACGTGTCTGTTAAAAAAAGGTTTCCACACTGTGTTTCGTTCTCCTCCCAACCAACGTGACGGTCTTGGGTGGTATAGATGATTTGATATTTATAATTATATGGCTGTGATATTTGATGCATTAATTTTGATCCAACTACCAAAACATAAAGACCCATCATTTCTGACAACGAAGAACATGTGGATCATTTTAATTCAAACTCGATTTTGTTTAAAAAATAAAAACTTTATTATTATGTATAAAAATGATGTTTGGATCCAAAGATTATACACTCACACTCCTTTCTTCTCCTTCAGATCCCAATTCCATGGGACATTCCTCAAACTCCGGAGCCGTAATGGCGGCGGCGGCGGCGGCAATGGGCGTCTTCATTTTGATGCTGAGCGGAAGTCATTGCAGCGTTGCTTCTCCAACTCCTTCCAGTTATGGCAACATCACCGTGGCCGCTGCCGCATCGATGTGGTGCGATGGCCGTGTCGAAGAATGCGTCACACGAGAAGGCGACGGCGAGTCGGCATTCCCAAGCTTGCTAGCCTCTACACCTAAGTTTATCAGTTTTCCGACGAGAAATCGGAATAAACCTGTGTGTGAGCGACCGGGAGATTATAAAAGCTGTTTCAATGCAAGGCGTACAAACACCAAGAACGACAATTGTGGCACATATGGTCGCGCCTGTCGAAGGTAA

mRNA sequence

ATGGGACATTCGTCAAACTCCGGAGGCGTAATGGCGGCGGCGGCGGCGGCGGCAATGGGCGTCTTCATTTTGGTGCTGAGCGGAAGTGATTGCAACGTTGCTTCTCCAACTCCTTCCAGTTATGGCAACAACACCGTGGCCGCTGCGGCATCGATGTGGTGCGATGGCCGCGTCGAAGAATGCGTCACACGAGAAGGCGACAGCGCGTCCGCATTCCCAAGCCTGCAAACCTCTACACATCCCAATTCCATGGGACATTCCTCAAACTCCGGAGCCGTAATGGCGGCGGCGGCGGCGGCAATGGGCGTCTTCATTTTGATGCTGAGCGGAAGTCATTGCAGCGTTGCTTCTCCAACTCCTTCCAGTTATGGCAACATCACCGTGGCCGCTGCCGCATCGATGTGGTGCGATGGCCGTGTCGAAGAATGCGTCACACGAGAAGGCGACGGCGAGTCGGCATTCCCAAGCTTGCTAGCCTCTACACCTAAGTTTATCAGTTTTCCGACGAGAAATCGGAATAAACCTGTGTGTGAGCGACCGGGAGATTATAAAAGCTGTTTCAATGCAAGGCGTACAAACACCAAGAACGACAATTGTGGCACATATGGTCGCGCCTGTCGAAGGTAA

Coding sequence (CDS)

ATGGGACATTCGTCAAACTCCGGAGGCGTAATGGCGGCGGCGGCGGCGGCGGCAATGGGCGTCTTCATTTTGGTGCTGAGCGGAAGTGATTGCAACGTTGCTTCTCCAACTCCTTCCAGTTATGGCAACAACACCGTGGCCGCTGCGGCATCGATGTGGTGCGATGGCCGCGTCGAAGAATGCGTCACACGAGAAGGCGACAGCGCGTCCGCATTCCCAAGCCTGCAAACCTCTACACATCCCAATTCCATGGGACATTCCTCAAACTCCGGAGCCGTAATGGCGGCGGCGGCGGCGGCAATGGGCGTCTTCATTTTGATGCTGAGCGGAAGTCATTGCAGCGTTGCTTCTCCAACTCCTTCCAGTTATGGCAACATCACCGTGGCCGCTGCCGCATCGATGTGGTGCGATGGCCGTGTCGAAGAATGCGTCACACGAGAAGGCGACGGCGAGTCGGCATTCCCAAGCTTGCTAGCCTCTACACCTAAGTTTATCAGTTTTCCGACGAGAAATCGGAATAAACCTGTGTGTGAGCGACCGGGAGATTATAAAAGCTGTTTCAATGCAAGGCGTACAAACACCAAGAACGACAATTGTGGCACATATGGTCGCGCCTGTCGAAGGTAA
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008801RALF
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G004470.1CmoCh01G004470.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 157..208
score: 7.

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G004470CmaCh01G004180Cucurbita maxima (Rimu)cmacmoB468
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G004470Silver-seed gourdcarcmoB0813
CmoCh01G004470Cucumber (Chinese Long) v3cmocucB0504
CmoCh01G004470Cucumber (Chinese Long) v3cmocucB0555
CmoCh01G004470Watermelon (97103) v2cmowmbB452
CmoCh01G004470Watermelon (97103) v2cmowmbB473
CmoCh01G004470Watermelon (97103) v2cmowmbB474
CmoCh01G004470Wax gourdcmowgoB0560
CmoCh01G004470Wax gourdcmowgoB0593
CmoCh01G004470Wax gourdcmowgoB0632
CmoCh01G004470Cucurbita moschata (Rifu)cmocmoB068
CmoCh01G004470Cucurbita moschata (Rifu)cmocmoB204
CmoCh01G004470Cucumber (Gy14) v1cgycmoB0268
CmoCh01G004470Cucumber (Gy14) v1cgycmoB0497
CmoCh01G004470Cucurbita maxima (Rimu)cmacmoB091
CmoCh01G004470Cucurbita maxima (Rimu)cmacmoB139
CmoCh01G004470Cucurbita maxima (Rimu)cmacmoB229
CmoCh01G004470Cucurbita maxima (Rimu)cmacmoB258
CmoCh01G004470Wild cucumber (PI 183967)cmocpiB424
CmoCh01G004470Wild cucumber (PI 183967)cmocpiB469
CmoCh01G004470Cucumber (Chinese Long) v2cmocuB420
CmoCh01G004470Cucumber (Chinese Long) v2cmocuB465
CmoCh01G004470Melon (DHL92) v3.5.1cmomeB385
CmoCh01G004470Melon (DHL92) v3.5.1cmomeB400
CmoCh01G004470Melon (DHL92) v3.5.1cmomeB426
CmoCh01G004470Watermelon (Charleston Gray)cmowcgB405
CmoCh01G004470Watermelon (Charleston Gray)cmowcgB423
CmoCh01G004470Watermelon (Charleston Gray)cmowcgB424
CmoCh01G004470Watermelon (97103) v1cmowmB425
CmoCh01G004470Watermelon (97103) v1cmowmB447
CmoCh01G004470Watermelon (97103) v1cmowmB462
CmoCh01G004470Cucurbita pepo (Zucchini)cmocpeB434
CmoCh01G004470Cucurbita pepo (Zucchini)cmocpeB449
CmoCh01G004470Cucurbita pepo (Zucchini)cmocpeB454
CmoCh01G004470Bottle gourd (USVL1VR-Ls)cmolsiB402
CmoCh01G004470Bottle gourd (USVL1VR-Ls)cmolsiB434
CmoCh01G004470Bottle gourd (USVL1VR-Ls)cmolsiB435
CmoCh01G004470Cucumber (Gy14) v2cgybcmoB102
CmoCh01G004470Cucumber (Gy14) v2cgybcmoB488
CmoCh01G004470Melon (DHL92) v3.6.1cmomedB442
CmoCh01G004470Melon (DHL92) v3.6.1cmomedB458
CmoCh01G004470Melon (DHL92) v3.6.1cmomedB490